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Csor.00g028080 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAACATAAGCACAATCGTCATTCAACGCCTGGTAATGTTTTTTCCTTTTTAACGTCTTTGATTCTTCCTTTCCAGAAAAGAATAAGTTCTTTTGTCAAGCGTCTCGCAAGTTTCTTTCAAGAACTCCGTTTATCTGGAATACGATGAAGGACTCGGATTGGTTAATTCAAAGTTGAATAGTGGGGAGTTAAGTTCGCATTATATGTTTTCTAAGAAATCGGTGTTTTCGAAAGCTGTAATGAAATAACATGGTAGGACTGTTTTGCAGTGAGGGCTTCTTGGATTGGTTTATCCTTTTATTTTGATATCTCTGTTAATTGGCTTGTTCTGAACTTTGGAGGCTGATTGATCAATTTTGAAACGGTAATAAAATAACATGGTATAAGAAAACGTTCTGTAGTTAATAATTGGGTATATTCACGATGCATTTTATAGATTGATTAAGAGTCGTATGATAACCATTTGATTTTTGAAAAATTAAGCTTACAAACACTAGTTACATCTATTGGTTTCTTTGTTTTATTGTCTACCTTTTAGGATTGATTTCAAATTCCAATCAAGTTTTCAACTAAAACAAGTTTTTGTTTTTAAGATTTGAGGAAATTGTGAGAAAACAAGCACAATATTTAAAAGCAAAAAACCAAATCGTTATCAAATGGGATCAGAAAATTAAATTCCTAAATGACATTCAAAAGGTTCTTTGTGTGTTCTGCAAAGAAAATGCAGGAAAAATCTAAATTTTTCTGTATATCATAATCTTGAATTTGAGGAAATGGCTGCTATGTCATTCATTTTATCTTTGTTCTCTTCCTTCTGTAGTTACTGTTTCTGAGTTCTAACTTGAGGTATTCCTGTTCTATGTAGGATTTCAATTGCTTGAATTAGAATTTGGTATCTGGTCCAGCAATAGCCTTGCTGGACTTCAATAGTAGAGGAGTGCATTTTATAGACTAGGATTGGATGGATCTGACATGGCTGAGTGCCATTGTAGTTGGGGCAAGCTGCCTTGTTTTGGGATACTGTATTGGTTCGAAGTATCCTCCTCGCATCTTTATCAAAGCTAAATTAGCCAAAATCAACCAATCCAGCAGAAATGGGAAGAAGGATAAGCCTAAAGAGCCATTGGAGGTCGAAAATTTGGCTGACATACTCGATGACTTCAAGATGGTCTGTCTCTCTGTTTCTCTCTTGCTGTCTATTGGAAAATCATTCTCGACGACTTTAAGACGTTCTCTCTTTTACTCTCTCTAAAAAAATATAACAACATTTCACTGTGTCTCTTCAGGTTTTAGTTGTGAGAAATGATTTGAAAATGGGAAAAGGAAAAATTGCTGCTCAATGCAGGTATTTTATTACCATCTTGTGGCTCCTCTTTCATTACTGATGTCTTTAATGCTAAAAATGATAGAAGTTTTAAATTTTACTGTTGCTTGCATACTATGAATGCTGGAGTTGGTTTTTATTAGAAACTAGTACTAAGAATTGGGCATATAATGTTTGGAAGTTTAGGGTAACAACCCACTGCACACCTGGTATAGTAAATTTATTGCAAAGATTTATAAGTTTAACTAAAATTATAACTAAAAGTATCAATGACTAACATAAGAGGTTTTGGATGATAATAGGCTGAAAGTCAAAGTTGTCACAATGCAAAATTTTGGATGATAATAGTGCTTCTATTTTTTGAAATATTGAGGAAAATTATTGATGAATGGAATCTATAAAACAACAGCAAAGGTGCTAATGGGAAGAATCATCCTCGTAAATAAAATTTCATGATGAAAGAAAGATGTATTGATTATGCACCCTTTTCACCTTTTTCTCAATTTCCAGACCAACCTGCTTTACTGTCAATGCTATATCCAAAAACTATGGATCCACTTTTTCATACCCAACCCTTTTCTTTCTTACATCACTTTTCTTCGGGTGCCCCTTTTCTTTACTATGAGGGTTACCCTAGGGAATGGTGGAGTCCTGAGAAAATTATCCTCTGAATTCCAGTCATTTATGAGATTAGTTTACTGTATAAGGAGGGATCTTTCGTCCATCACTGTCTAGGTGCTCTACTTTTGGTGGATCTCTCAACGGCGCTTTCTGGACATCTAATTTGAAGATTTATTGTCTGAATTTTTTGCTTGGTTGGTTGATAGTTGAATAATAGACAATAGGCATAATGAAACCATCAGTTAAATTTATTTAGTTGGAATATTGTAGCATACTTGTAGATTCTGGGTTTTATGGCCGTTTTTGTTTTTTTGTCCTTGGTAATGTGTGGTATCCTATCCTTCCACCACATTAAGGTATACAGATACCTTTCAATCCTCATGGCAGATTGCGATGGACATAATAGTTAAGCTAAAACTTGGTTGAGCTTGCATAGATGCAGTTTAACTGAAGGGATTTTGATGATAAGGAAGAAGAACCGTCAGAACTTTTATGGTACAAGGCATATAAGTGGAATATGCATTGAACACCCCTATGCATAGCTCTGATACCATGTTAGGAACCACGACCCTTTACGAAAAGAATTGCCAATACTAGACAAATTATGATACTATACTATTACTTGAGAGGCCAAATTTTCGTATGATTTAATATGAGTATTGACTGTTTAAGTACTGCCTTTTTACTTGTTTAAAAATTAAATGATTGAGAATTGAGCCTAGGAATCTAATTTCGTCAAACCTTTGCACAGTGAACTTCCCAGTTTCTTAATGCTGTAAATTATATTTGGACTAGTTTCTGATCCACTTAACTTGCTTTTGTTAGTCATGCAACTTTGGGTCTCTATAAGAAGCTCCATTATCGTGCACCAAAAGCGTTGAATAGGTACGTATTTACAGAATCGTCCTCCCTATATTAATGTGCATCCCATACTTCGTTCCCTGTACATTTATTTGATTTTATTTACATGTAGGTGGGAAATGTGTGGACAACCCAAGGTGGTACTGAAGATAGAAAGTGAGGAAGACATGCTAGTCTTGCAAGTAACAATTCCACTATGATTTCCTTTCTTAAAAGTTCATTTTATGGTATCTAGCTGATTTTTGTTATATGAAGTTCTCCCTAATATAATCCGATCGCGCTTTTCTATATCTCATCTATTCTTTGAGGCATTTCAGTAATTCTTTCATTTTTTCAAACTTTTGTATATTGTTGTTCATCAGGAGAGGGCAAAATCATTGAAGCTACCAACCCATATTACCATTGATGCCGGAAAAACTCAGATTGCTCCTAGTGAGTTAAATGAAATTCACCGAAGTAGATCGACTTTTTTTCACAGTAAATTTATCAACTTCACTAATTTTCACTTTTTTGTCTTTCCAGATTCAAGAACGGTGATGGCAATTCTTGGTAAGTAGATTTTTTTCCATGCAACCTTTAGCTTAAAGAGTAGATCTACATAACAATTTCATTTTGGTGCTATGTAAAATTAGTATAAACTAATTTGATTCATCCAATGAATATAATGGTGTACACTTTTTGCTTCACAAATTGCAGGTCCTGTTGAAGTGGTTGATGATGTAACTGGCGGGTTAAAACTTTTGTAG ATGCAACATAAGCACAATCGTCATTCAACGCCTGGATTTCAATTGCTTGAATTAGAATTTGTTGGGGCAAGCTGCCTTGTTTTGGGATACTGTATTGGTTCGAAGTATCCTCCTCGCATCTTTATCAAAGCTAAATTAGCCAAAATCAACCAATCCAGCAGAAATGGGAAGAAGGATAAGCCTAAAGAGCCATTGGAGGTCGAAAATTTGGCTGACATACTCGATGACTTCAAGATGGTTTTAGTTGTGAGAAATGATTTGAAAATGGGAAAAGGAAAAATTGCTGCTCAATGCAGTCATGCAACTTTGGGTCTCTATAAGAAGCTCCATTATCGTGCACCAAAAGCGTTGAATAGGTGGGAAATGTGTGGACAACCCAAGGTGGTACTGAAGATAGAAAGTGAGGAAGACATGCTAGTCTTGCAAGAGAGGGCAAAATCATTGAAGCTACCAACCCATATTACCATTGATGCCGGAAAAACTCAGATTGCTCCTAATTCAAGAACGGTGATGGCAATTCTTGGTCCTGTTGAAGTGGTTGATGATGTAACTGGCGGGTTAAAACTTTTGTAG ATGCAACATAAGCACAATCGTCATTCAACGCCTGGATTTCAATTGCTTGAATTAGAATTTGTTGGGGCAAGCTGCCTTGTTTTGGGATACTGTATTGGTTCGAAGTATCCTCCTCGCATCTTTATCAAAGCTAAATTAGCCAAAATCAACCAATCCAGCAGAAATGGGAAGAAGGATAAGCCTAAAGAGCCATTGGAGGTCGAAAATTTGGCTGACATACTCGATGACTTCAAGATGGTTTTAGTTGTGAGAAATGATTTGAAAATGGGAAAAGGAAAAATTGCTGCTCAATGCAGTCATGCAACTTTGGGTCTCTATAAGAAGCTCCATTATCGTGCACCAAAAGCGTTGAATAGGTGGGAAATGTGTGGACAACCCAAGGTGGTACTGAAGATAGAAAGTGAGGAAGACATGCTAGTCTTGCAAGAGAGGGCAAAATCATTGAAGCTACCAACCCATATTACCATTGATGCCGGAAAAACTCAGATTGCTCCTAATTCAAGAACGGTGATGGCAATTCTTGGTCCTGTTGAAGTGGTTGATGATGTAACTGGCGGGTTAAAACTTTTGTAG MQHKHNRHSTPGFQLLELEFVGASCLVLGYCIGSKYPPRIFIKAKLAKINQSSRNGKKDKPKEPLEVENLADILDDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLHYRAPKALNRWEMCGQPKVVLKIESEEDMLVLQERAKSLKLPTHITIDAGKTQIAPNSRTVMAILGPVEVVDDVTGGLKLL Homology
BLAST of Csor.00g028080 vs. ExPASy Swiss-Prot
Match: Q9Y3E5 (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens OX=9606 GN=PTRH2 PE=1 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 1.3e-30 Identity = 72/137 (52.55%), Postives = 92/137 (67.15%), Query Frame = 0
BLAST of Csor.00g028080 vs. ExPASy Swiss-Prot
Match: Q3ZBL5 (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus OX=9913 GN=PTRH2 PE=2 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 6.6e-30 Identity = 70/128 (54.69%), Postives = 88/128 (68.75%), Query Frame = 0
BLAST of Csor.00g028080 vs. ExPASy Swiss-Prot
Match: Q8R2Y8 (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus OX=10090 GN=Ptrh2 PE=1 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 6.6e-30 Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 0
BLAST of Csor.00g028080 vs. ExPASy Swiss-Prot
Match: O97067 (Probable peptidyl-tRNA hydrolase 2 OS=Drosophila melanogaster OX=7227 GN=CG1307 PE=2 SV=2) HSP 1 Score: 120.9 bits (302), Expect = 1.5e-26 Identity = 61/118 (51.69%), Postives = 84/118 (71.19%), Query Frame = 0
BLAST of Csor.00g028080 vs. ExPASy Swiss-Prot
Match: O13830 (Probable peptidyl-tRNA hydrolase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC19A8.14 PE=1 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 7.8e-23 Identity = 72/183 (39.34%), Postives = 98/183 (53.55%), Query Frame = 0
BLAST of Csor.00g028080 vs. NCBI nr
Match: KAG6571187.1 (Peptidyl-tRNA hydrolase 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 379 bits (974), Expect = 1.03e-132 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of Csor.00g028080 vs. NCBI nr
Match: XP_023511827.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 353 bits (905), Expect = 2.49e-122 Identity = 180/190 (94.74%), Postives = 181/190 (95.26%), Query Frame = 0
BLAST of Csor.00g028080 vs. NCBI nr
Match: XP_022944764.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 352 bits (904), Expect = 3.54e-122 Identity = 180/190 (94.74%), Postives = 181/190 (95.26%), Query Frame = 0
BLAST of Csor.00g028080 vs. NCBI nr
Match: XP_022986616.1 (peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 350 bits (899), Expect = 2.05e-121 Identity = 179/190 (94.21%), Postives = 181/190 (95.26%), Query Frame = 0
BLAST of Csor.00g028080 vs. NCBI nr
Match: KAG7010995.1 (Peptidyl-tRNA hydrolase 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 336 bits (862), Expect = 8.66e-116 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of Csor.00g028080 vs. ExPASy TrEMBL
Match: A0A6J1FZ05 (Aminoacyl-tRNA hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111449121 PE=4 SV=1) HSP 1 Score: 352 bits (904), Expect = 1.72e-122 Identity = 180/190 (94.74%), Postives = 181/190 (95.26%), Query Frame = 0
BLAST of Csor.00g028080 vs. ExPASy TrEMBL
Match: A0A6J1JBP2 (Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111484304 PE=4 SV=1) HSP 1 Score: 350 bits (899), Expect = 9.92e-122 Identity = 179/190 (94.21%), Postives = 181/190 (95.26%), Query Frame = 0
BLAST of Csor.00g028080 vs. ExPASy TrEMBL
Match: A0A6J1FZ04 (Aminoacyl-tRNA hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111449121 PE=4 SV=1) HSP 1 Score: 335 bits (858), Expect = 1.71e-115 Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of Csor.00g028080 vs. ExPASy TrEMBL
Match: A0A6J1J827 (Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111484304 PE=4 SV=1) HSP 1 Score: 333 bits (853), Expect = 9.53e-115 Identity = 168/170 (98.82%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of Csor.00g028080 vs. ExPASy TrEMBL
Match: A0A6J1G686 (Aminoacyl-tRNA hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111451148 PE=4 SV=1) HSP 1 Score: 321 bits (823), Expect = 3.69e-110 Identity = 162/170 (95.29%), Postives = 165/170 (97.06%), Query Frame = 0
BLAST of Csor.00g028080 vs. TAIR 10
Match: AT3G03010.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein ) HSP 1 Score: 243.4 bits (620), Expect = 1.4e-64 Identity = 130/177 (73.45%), Postives = 145/177 (81.92%), Query Frame = 0
BLAST of Csor.00g028080 vs. TAIR 10
Match: AT3G03010.2 (Peptidyl-tRNA hydrolase II (PTH2) family protein ) HSP 1 Score: 243.4 bits (620), Expect = 1.4e-64 Identity = 130/177 (73.45%), Postives = 145/177 (81.92%), Query Frame = 0
BLAST of Csor.00g028080 vs. TAIR 10
Match: AT5G16870.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein ) HSP 1 Score: 229.6 bits (584), Expect = 2.2e-60 Identity = 125/170 (73.53%), Postives = 140/170 (82.35%), Query Frame = 0
BLAST of Csor.00g028080 vs. TAIR 10
Match: AT4G32900.2 (Peptidyl-tRNA hydrolase II (PTH2) family protein ) HSP 1 Score: 113.2 bits (282), Expect = 2.3e-25 Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 0
BLAST of Csor.00g028080 vs. TAIR 10
Match: AT4G32900.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein ) HSP 1 Score: 68.6 bits (166), Expect = 6.4e-12 Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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