Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTGCAACTGCGAACATGGTTTTGTCGAAACAAAAAGTCGAAGCAGAAATTGAGAGAAAAGCTAGCCGAATCGTTAATTTCATCAGTCGCCGGCAAACACTCCAACGCTGATGCTTCCGGTGAACCGGATACAGAATCTCGGCGAGAAACCCTCAAAGAGCTATTAGGAACCGCTACTCGCCATGGACCTAGATTGTCCAAGCGAGAGAAACGAAGAGAATCGGTAATTTTCACAGCGTCGGATGGGAATAAGGATCAGAAGAAGGAAGAGGATAATGAGAAGGCCAAGAAGTTGAAGAAAAAGAAGAAGAAGAGTAATAAGAAGACAAAAAGTGGCGAGGAGGAGAAGGAGAAGCAGGGAGATGTAGCTGGGAATGAAGTGAAACGGCAGCTTGAAGAAACTCAGAATAATATAGGCAGGTAG
mRNA sequence
ATGATTCTGCAACTGCGAACATGGTTTTGTCGAAACAAAAAGTCGAAGCAGAAATTGAGAGAAAAGCTAGCCGAATCGTTAATTTCATCAGTCGCCGGCAAACACTCCAACGCTGATGCTTCCGGTGAACCGGATACAGAATCTCGGCGAGAAACCCTCAAAGAGCTATTAGGAACCGCTACTCGCCATGGACCTAGATTGTCCAAGCGAGAGAAACGAAGAGAATCGGTAATTTTCACAGCGTCGGATGGGAATAAGGATCAGAAGAAGGAAGAGGATAATGAGAAGGCCAAGAAGTTGAAGAAAAAGAAGAAGAAGAGTAATAAGAAGACAAAAAGTGGCGAGGAGGAGAAGGAGAAGCAGGGAGATGTAGCTGGGAATGAAGTGAAACGGCAGCTTGAAGAAACTCAGAATAATATAGGCAGGTAG
Coding sequence (CDS)
ATGATTCTGCAACTGCGAACATGGTTTTGTCGAAACAAAAAGTCGAAGCAGAAATTGAGAGAAAAGCTAGCCGAATCGTTAATTTCATCAGTCGCCGGCAAACACTCCAACGCTGATGCTTCCGGTGAACCGGATACAGAATCTCGGCGAGAAACCCTCAAAGAGCTATTAGGAACCGCTACTCGCCATGGACCTAGATTGTCCAAGCGAGAGAAACGAAGAGAATCGGTAATTTTCACAGCGTCGGATGGGAATAAGGATCAGAAGAAGGAAGAGGATAATGAGAAGGCCAAGAAGTTGAAGAAAAAGAAGAAGAAGAGTAATAAGAAGACAAAAAGTGGCGAGGAGGAGAAGGAGAAGCAGGGAGATGTAGCTGGGAATGAAGTGAAACGGCAGCTTGAAGAAACTCAGAATAATATAGGCAGGTAG
Protein sequence
MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEKQGDVAGNEVKRQLEETQNNIGR
Homology
BLAST of Csor.00g027810 vs. NCBI nr
Match:
KAG6601014.1 (hypothetical protein SDJN03_06247, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 250 bits (639), Expect = 3.34e-83
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA 60
MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA
Sbjct: 1 MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA 60
Query: 61 TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK 120
TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK
Sbjct: 61 TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK 120
Query: 121 QGDVAGNEVKRQLEETQNNIGR 142
QGDVAGNEVKRQLEETQNNIGR
Sbjct: 121 QGDVAGNEVKRQLEETQNNIGR 142
BLAST of Csor.00g027810 vs. NCBI nr
Match:
KAG7031626.1 (hypothetical protein SDJN02_05667, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 216 bits (551), Expect = 4.67e-67
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query: 1 MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA 60
MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA
Sbjct: 1 MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA 60
Query: 61 TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK 120
TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK
Sbjct: 61 TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK 120
Query: 121 QGD 123
QGD
Sbjct: 121 QGD 123
BLAST of Csor.00g027810 vs. NCBI nr
Match:
XP_038891335.1 (protein gar2 [Benincasa hispida])
HSP 1 Score: 161 bits (407), Expect = 1.34e-44
Identity = 108/168 (64.29%), Postives = 119/168 (70.83%), Query Frame = 0
Query: 12 NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
NKK K+KLREKLAESLISSVAGK SN D SGEPDTESRR++LKELLGT RHGPRLSKRE
Sbjct: 5 NKKLKKKLREKLAESLISSVAGKDSNGDVSGEPDTESRRKSLKELLGTVCRHGPRLSKRE 64
Query: 72 KRRESVIFTASDGNKDQKKE-------------------------------EDNEKAKKL 131
KRRES+I TASDGNKD+KKE E+NEKAKKL
Sbjct: 65 KRRESLILTASDGNKDEKKEDGNRGLGETKREKKRKRDEGAKEKNLVDGLEENNEKAKKL 124
Query: 132 KKKKK-------KSNKKTKSGEEEKEKQGDVAGNEVKRQLEETQNNIG 141
KKKKK KSNKK K+GEEE+EKQG+V+GNEVK Q+EET NIG
Sbjct: 125 KKKKKQQKKKKKKSNKKAKNGEEEEEKQGEVSGNEVKVQVEETHYNIG 172
BLAST of Csor.00g027810 vs. NCBI nr
Match:
XP_008461639.1 (PREDICTED: RNA-binding protein CP31B, chloroplastic [Cucumis melo])
HSP 1 Score: 151 bits (382), Expect = 6.61e-41
Identity = 104/169 (61.54%), Postives = 116/169 (68.64%), Query Frame = 0
Query: 12 NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
NKK KQKLREKLAESLISSVAGK +N D SGE DTES R++LKELLGTA+ HGPRLSKRE
Sbjct: 5 NKKLKQKLREKLAESLISSVAGKDTNVDVSGERDTESPRKSLKELLGTASGHGPRLSKRE 64
Query: 72 KRRESVIFTASDGNKDQKKEEDN-------------------------------EKAKKL 131
KRRES+I T SDGNK++KKEE+N EKAKKL
Sbjct: 65 KRRESLILTGSDGNKNEKKEEENQGLGEMKREKKRKRNEGVKEKNAVDGLEKDKEKAKKL 124
Query: 132 K--------KKKKKSNKKTKSGEEEKEKQGDVAGNEVKRQLEETQNNIG 141
K KKKKKSNKK +GEEEKEKQGDV+GN+VK Q+EET NIG
Sbjct: 125 KNKKKQQQKKKKKKSNKKENNGEEEKEKQGDVSGNDVKGQVEETHYNIG 173
BLAST of Csor.00g027810 vs. NCBI nr
Match:
XP_031742307.1 (protein gar2 [Cucumis sativus] >KAE8647980.1 hypothetical protein Csa_000404 [Cucumis sativus])
HSP 1 Score: 136 bits (342), Expect = 4.87e-35
Identity = 100/175 (57.14%), Postives = 113/175 (64.57%), Query Frame = 0
Query: 12 NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
NKK KQKLREKLAESLISSVAG+ +N SGE DTES R++LKELLGTA+ +GPRLSKRE
Sbjct: 5 NKKLKQKLREKLAESLISSVAGRDTNFGVSGERDTESPRKSLKELLGTASGNGPRLSKRE 64
Query: 72 KRRESVIFTASDGNKDQKKE---------------------------EDNEKAKKLKKKK 131
KRRES++ T SDGNK +KKE EDNEKAKKLK KK
Sbjct: 65 KRRESLVLTGSDGNKKEKKEDENQGLGEKKRKRNEGVKEKNAVDGLEEDNEKAKKLKNKK 124
Query: 132 K----------KSNKKTKSGEEEKEK--------QGDVAGNEVKRQLEETQNNIG 141
K KSNKK +GEEEKEK QGDV+GN+VK Q+EET NIG
Sbjct: 125 KQQQKKKMKKKKSNKKENNGEEEKEKEKEKEKEKQGDVSGNDVKGQVEETHYNIG 179
BLAST of Csor.00g027810 vs. ExPASy TrEMBL
Match:
A0A1S3CF29 (RNA-binding protein CP31B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500194 PE=4 SV=1)
HSP 1 Score: 151 bits (382), Expect = 3.20e-41
Identity = 104/169 (61.54%), Postives = 116/169 (68.64%), Query Frame = 0
Query: 12 NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
NKK KQKLREKLAESLISSVAGK +N D SGE DTES R++LKELLGTA+ HGPRLSKRE
Sbjct: 5 NKKLKQKLREKLAESLISSVAGKDTNVDVSGERDTESPRKSLKELLGTASGHGPRLSKRE 64
Query: 72 KRRESVIFTASDGNKDQKKEEDN-------------------------------EKAKKL 131
KRRES+I T SDGNK++KKEE+N EKAKKL
Sbjct: 65 KRRESLILTGSDGNKNEKKEEENQGLGEMKREKKRKRNEGVKEKNAVDGLEKDKEKAKKL 124
Query: 132 K--------KKKKKSNKKTKSGEEEKEKQGDVAGNEVKRQLEETQNNIG 141
K KKKKKSNKK +GEEEKEKQGDV+GN+VK Q+EET NIG
Sbjct: 125 KNKKKQQQKKKKKKSNKKENNGEEEKEKQGDVSGNDVKGQVEETHYNIG 173
BLAST of Csor.00g027810 vs. ExPASy TrEMBL
Match:
A0A6J1FSC3 (protein gar2 OS=Cucurbita moschata OX=3662 GN=LOC111447996 PE=4 SV=1)
HSP 1 Score: 129 bits (324), Expect = 1.24e-32
Identity = 95/172 (55.23%), Postives = 107/172 (62.21%), Query Frame = 0
Query: 12 NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
NKK KQK REKLAESLISS+AGK SN D SGEP+++SR ++LKELLG RHG RLSKRE
Sbjct: 5 NKKLKQKFREKLAESLISSIAGKVSNGDVSGEPESDSRPQSLKELLGGTGRHGTRLSKRE 64
Query: 72 KRRESVIFTASDGNKDQKK--------------------------------EEDNEKAKK 131
KRRESVI TASDG D++K EED+EKAKK
Sbjct: 65 KRRESVISTASDGKNDEEKKEGENQRLGERKGEKKRKRNEEVKEKSAVDGLEEDDEKAKK 124
Query: 132 LK----------KKKKKSNKKTKSGEEEKEKQGDVAGNEVKRQLEETQNNIG 141
LK KKK+K KK KS EEEKEKQG GNEV Q+EET +NIG
Sbjct: 125 LKLKKNKMNKKKKKKQKKQKKQKSNEEEKEKQGGEDGNEVVGQVEETHDNIG 176
BLAST of Csor.00g027810 vs. ExPASy TrEMBL
Match:
A0A6J1JA04 (protein gar2-like OS=Cucurbita maxima OX=3661 GN=LOC111483911 PE=4 SV=1)
HSP 1 Score: 126 bits (316), Expect = 1.83e-31
Identity = 93/176 (52.84%), Postives = 108/176 (61.36%), Query Frame = 0
Query: 12 NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
NKK KQK REKLAESLISS+AG+ SN D SGEP+++SR ++LKELLG RHG RLSKRE
Sbjct: 5 NKKLKQKFREKLAESLISSIAGRVSNGDVSGEPESDSRPQSLKELLGGTGRHGTRLSKRE 64
Query: 72 KRRESVIFTASDGNKDQKK--------------------------------EEDNEKAKK 131
KRRES I TASDG D++K EED+EKAKK
Sbjct: 65 KRRESFISTASDGKNDEEKKEGENQRLGERKGEKKRKRNEEVKEKSAVDGLEEDDEKAKK 124
Query: 132 LKK--------------KKKKSNKKTKSGEEEKEKQGDVAGNEVKRQLEETQNNIG 141
LKK KK+KSN+K K+ EEEKEKQG GNEV Q+EET +NIG
Sbjct: 125 LKKNKMNKKKKKKQKKQKKQKSNEKAKNSEEEKEKQGGEDGNEVLGQVEETHDNIG 180
BLAST of Csor.00g027810 vs. ExPASy TrEMBL
Match:
A0A6J1CDP4 (protein gar2 OS=Momordica charantia OX=3673 GN=LOC111010281 PE=4 SV=1)
HSP 1 Score: 124 bits (312), Expect = 5.48e-31
Identity = 91/169 (53.85%), Postives = 107/169 (63.31%), Query Frame = 0
Query: 12 NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
NKK KQKLREKLAESLI++VAGK S D SGEPD+ESR ++L+ELLG + HGPRLSKRE
Sbjct: 5 NKKLKQKLREKLAESLIATVAGKDSVGDVSGEPDSESRPQSLRELLGAVSHHGPRLSKRE 64
Query: 72 KRRESVIFTASDGNKDQKKEED--------------------------------NEKAKK 131
KRRES+ ASD +++K+ED NEKAKK
Sbjct: 65 KRRESLTLVASDEKNNEEKKEDENQRLGGTKREXKRKRDEEGAEKSALDGSAENNEKAKK 124
Query: 132 LKKKKKKSNKKTK-------SGEEEKEKQGDVAGNEVKRQLEETQNNIG 141
LKKKKKK KKTK +GEEEKEKQG GNEV+ LEET +N+G
Sbjct: 125 LKKKKKKKKKKTKKSNKKADNGEEEKEKQGGEGGNEVEG-LEETHDNVG 172
BLAST of Csor.00g027810 vs. ExPASy TrEMBL
Match:
A0A0A0KLT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180870 PE=4 SV=1)
HSP 1 Score: 117 bits (293), Expect = 4.72e-28
Identity = 85/147 (57.82%), Postives = 96/147 (65.31%), Query Frame = 0
Query: 12 NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
NKK KQKLREKLAESLISSVAG+ +N SGE DTES R++LKELLGTA+ +GPRLSKRE
Sbjct: 5 NKKLKQKLREKLAESLISSVAGRDTNFGVSGERDTESPRKSLKELLGTASGNGPRLSKRE 64
Query: 72 KRRESVIFTASDGNKDQKKE---------------------------EDNEKAKKLKKKK 121
KRRES++ T SDGNK +KKE EDNEKAKKLK KK
Sbjct: 65 KRRESLVLTGSDGNKKEKKEDENQGLGEKKRKRNEGVKEKNAVDGLEEDNEKAKKLKNKK 124
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6601014.1 | 3.34e-83 | 100.00 | hypothetical protein SDJN03_06247, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7031626.1 | 4.67e-67 | 100.00 | hypothetical protein SDJN02_05667, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_038891335.1 | 1.34e-44 | 64.29 | protein gar2 [Benincasa hispida] | [more] |
XP_008461639.1 | 6.61e-41 | 61.54 | PREDICTED: RNA-binding protein CP31B, chloroplastic [Cucumis melo] | [more] |
XP_031742307.1 | 4.87e-35 | 57.14 | protein gar2 [Cucumis sativus] >KAE8647980.1 hypothetical protein Csa_000404 [Cu... | [more] |
Match Name | E-value | Identity | Description | |
A0A1S3CF29 | 3.20e-41 | 61.54 | RNA-binding protein CP31B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500194... | [more] |
A0A6J1FSC3 | 1.24e-32 | 55.23 | protein gar2 OS=Cucurbita moschata OX=3662 GN=LOC111447996 PE=4 SV=1 | [more] |
A0A6J1JA04 | 1.83e-31 | 52.84 | protein gar2-like OS=Cucurbita maxima OX=3661 GN=LOC111483911 PE=4 SV=1 | [more] |
A0A6J1CDP4 | 5.48e-31 | 53.85 | protein gar2 OS=Momordica charantia OX=3673 GN=LOC111010281 PE=4 SV=1 | [more] |
A0A0A0KLT8 | 4.72e-28 | 57.82 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180870 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |