Csor.00g027810 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g027810
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRNA-binding protein CP31B, chloroplastic
LocationCsor_Chr04: 6217314 .. 6217742 (-)
RNA-Seq ExpressionCsor.00g027810
SyntenyCsor.00g027810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTGCAACTGCGAACATGGTTTTGTCGAAACAAAAAGTCGAAGCAGAAATTGAGAGAAAAGCTAGCCGAATCGTTAATTTCATCAGTCGCCGGCAAACACTCCAACGCTGATGCTTCCGGTGAACCGGATACAGAATCTCGGCGAGAAACCCTCAAAGAGCTATTAGGAACCGCTACTCGCCATGGACCTAGATTGTCCAAGCGAGAGAAACGAAGAGAATCGGTAATTTTCACAGCGTCGGATGGGAATAAGGATCAGAAGAAGGAAGAGGATAATGAGAAGGCCAAGAAGTTGAAGAAAAAGAAGAAGAAGAGTAATAAGAAGACAAAAAGTGGCGAGGAGGAGAAGGAGAAGCAGGGAGATGTAGCTGGGAATGAAGTGAAACGGCAGCTTGAAGAAACTCAGAATAATATAGGCAGGTAG

mRNA sequence

ATGATTCTGCAACTGCGAACATGGTTTTGTCGAAACAAAAAGTCGAAGCAGAAATTGAGAGAAAAGCTAGCCGAATCGTTAATTTCATCAGTCGCCGGCAAACACTCCAACGCTGATGCTTCCGGTGAACCGGATACAGAATCTCGGCGAGAAACCCTCAAAGAGCTATTAGGAACCGCTACTCGCCATGGACCTAGATTGTCCAAGCGAGAGAAACGAAGAGAATCGGTAATTTTCACAGCGTCGGATGGGAATAAGGATCAGAAGAAGGAAGAGGATAATGAGAAGGCCAAGAAGTTGAAGAAAAAGAAGAAGAAGAGTAATAAGAAGACAAAAAGTGGCGAGGAGGAGAAGGAGAAGCAGGGAGATGTAGCTGGGAATGAAGTGAAACGGCAGCTTGAAGAAACTCAGAATAATATAGGCAGGTAG

Coding sequence (CDS)

ATGATTCTGCAACTGCGAACATGGTTTTGTCGAAACAAAAAGTCGAAGCAGAAATTGAGAGAAAAGCTAGCCGAATCGTTAATTTCATCAGTCGCCGGCAAACACTCCAACGCTGATGCTTCCGGTGAACCGGATACAGAATCTCGGCGAGAAACCCTCAAAGAGCTATTAGGAACCGCTACTCGCCATGGACCTAGATTGTCCAAGCGAGAGAAACGAAGAGAATCGGTAATTTTCACAGCGTCGGATGGGAATAAGGATCAGAAGAAGGAAGAGGATAATGAGAAGGCCAAGAAGTTGAAGAAAAAGAAGAAGAAGAGTAATAAGAAGACAAAAAGTGGCGAGGAGGAGAAGGAGAAGCAGGGAGATGTAGCTGGGAATGAAGTGAAACGGCAGCTTGAAGAAACTCAGAATAATATAGGCAGGTAG

Protein sequence

MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEKQGDVAGNEVKRQLEETQNNIGR
Homology
BLAST of Csor.00g027810 vs. NCBI nr
Match: KAG6601014.1 (hypothetical protein SDJN03_06247, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 250 bits (639), Expect = 3.34e-83
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0

Query: 1   MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA 60
           MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA
Sbjct: 1   MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA 60

Query: 61  TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK 120
           TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK
Sbjct: 61  TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK 120

Query: 121 QGDVAGNEVKRQLEETQNNIGR 142
           QGDVAGNEVKRQLEETQNNIGR
Sbjct: 121 QGDVAGNEVKRQLEETQNNIGR 142

BLAST of Csor.00g027810 vs. NCBI nr
Match: KAG7031626.1 (hypothetical protein SDJN02_05667, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216 bits (551), Expect = 4.67e-67
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0

Query: 1   MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA 60
           MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA
Sbjct: 1   MILQLRTWFCRNKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTA 60

Query: 61  TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK 120
           TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK
Sbjct: 61  TRHGPRLSKREKRRESVIFTASDGNKDQKKEEDNEKAKKLKKKKKKSNKKTKSGEEEKEK 120

Query: 121 QGD 123
           QGD
Sbjct: 121 QGD 123

BLAST of Csor.00g027810 vs. NCBI nr
Match: XP_038891335.1 (protein gar2 [Benincasa hispida])

HSP 1 Score: 161 bits (407), Expect = 1.34e-44
Identity = 108/168 (64.29%), Postives = 119/168 (70.83%), Query Frame = 0

Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK K+KLREKLAESLISSVAGK SN D SGEPDTESRR++LKELLGT  RHGPRLSKRE
Sbjct: 5   NKKLKKKLREKLAESLISSVAGKDSNGDVSGEPDTESRRKSLKELLGTVCRHGPRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKKE-------------------------------EDNEKAKKL 131
           KRRES+I TASDGNKD+KKE                               E+NEKAKKL
Sbjct: 65  KRRESLILTASDGNKDEKKEDGNRGLGETKREKKRKRDEGAKEKNLVDGLEENNEKAKKL 124

Query: 132 KKKKK-------KSNKKTKSGEEEKEKQGDVAGNEVKRQLEETQNNIG 141
           KKKKK       KSNKK K+GEEE+EKQG+V+GNEVK Q+EET  NIG
Sbjct: 125 KKKKKQQKKKKKKSNKKAKNGEEEEEKQGEVSGNEVKVQVEETHYNIG 172

BLAST of Csor.00g027810 vs. NCBI nr
Match: XP_008461639.1 (PREDICTED: RNA-binding protein CP31B, chloroplastic [Cucumis melo])

HSP 1 Score: 151 bits (382), Expect = 6.61e-41
Identity = 104/169 (61.54%), Postives = 116/169 (68.64%), Query Frame = 0

Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQKLREKLAESLISSVAGK +N D SGE DTES R++LKELLGTA+ HGPRLSKRE
Sbjct: 5   NKKLKQKLREKLAESLISSVAGKDTNVDVSGERDTESPRKSLKELLGTASGHGPRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKKEEDN-------------------------------EKAKKL 131
           KRRES+I T SDGNK++KKEE+N                               EKAKKL
Sbjct: 65  KRRESLILTGSDGNKNEKKEEENQGLGEMKREKKRKRNEGVKEKNAVDGLEKDKEKAKKL 124

Query: 132 K--------KKKKKSNKKTKSGEEEKEKQGDVAGNEVKRQLEETQNNIG 141
           K        KKKKKSNKK  +GEEEKEKQGDV+GN+VK Q+EET  NIG
Sbjct: 125 KNKKKQQQKKKKKKSNKKENNGEEEKEKQGDVSGNDVKGQVEETHYNIG 173

BLAST of Csor.00g027810 vs. NCBI nr
Match: XP_031742307.1 (protein gar2 [Cucumis sativus] >KAE8647980.1 hypothetical protein Csa_000404 [Cucumis sativus])

HSP 1 Score: 136 bits (342), Expect = 4.87e-35
Identity = 100/175 (57.14%), Postives = 113/175 (64.57%), Query Frame = 0

Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQKLREKLAESLISSVAG+ +N   SGE DTES R++LKELLGTA+ +GPRLSKRE
Sbjct: 5   NKKLKQKLREKLAESLISSVAGRDTNFGVSGERDTESPRKSLKELLGTASGNGPRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKKE---------------------------EDNEKAKKLKKKK 131
           KRRES++ T SDGNK +KKE                           EDNEKAKKLK KK
Sbjct: 65  KRRESLVLTGSDGNKKEKKEDENQGLGEKKRKRNEGVKEKNAVDGLEEDNEKAKKLKNKK 124

Query: 132 K----------KSNKKTKSGEEEKEK--------QGDVAGNEVKRQLEETQNNIG 141
           K          KSNKK  +GEEEKEK        QGDV+GN+VK Q+EET  NIG
Sbjct: 125 KQQQKKKMKKKKSNKKENNGEEEKEKEKEKEKEKQGDVSGNDVKGQVEETHYNIG 179

BLAST of Csor.00g027810 vs. ExPASy TrEMBL
Match: A0A1S3CF29 (RNA-binding protein CP31B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500194 PE=4 SV=1)

HSP 1 Score: 151 bits (382), Expect = 3.20e-41
Identity = 104/169 (61.54%), Postives = 116/169 (68.64%), Query Frame = 0

Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQKLREKLAESLISSVAGK +N D SGE DTES R++LKELLGTA+ HGPRLSKRE
Sbjct: 5   NKKLKQKLREKLAESLISSVAGKDTNVDVSGERDTESPRKSLKELLGTASGHGPRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKKEEDN-------------------------------EKAKKL 131
           KRRES+I T SDGNK++KKEE+N                               EKAKKL
Sbjct: 65  KRRESLILTGSDGNKNEKKEEENQGLGEMKREKKRKRNEGVKEKNAVDGLEKDKEKAKKL 124

Query: 132 K--------KKKKKSNKKTKSGEEEKEKQGDVAGNEVKRQLEETQNNIG 141
           K        KKKKKSNKK  +GEEEKEKQGDV+GN+VK Q+EET  NIG
Sbjct: 125 KNKKKQQQKKKKKKSNKKENNGEEEKEKQGDVSGNDVKGQVEETHYNIG 173

BLAST of Csor.00g027810 vs. ExPASy TrEMBL
Match: A0A6J1FSC3 (protein gar2 OS=Cucurbita moschata OX=3662 GN=LOC111447996 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 1.24e-32
Identity = 95/172 (55.23%), Postives = 107/172 (62.21%), Query Frame = 0

Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQK REKLAESLISS+AGK SN D SGEP+++SR ++LKELLG   RHG RLSKRE
Sbjct: 5   NKKLKQKFREKLAESLISSIAGKVSNGDVSGEPESDSRPQSLKELLGGTGRHGTRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKK--------------------------------EEDNEKAKK 131
           KRRESVI TASDG  D++K                                EED+EKAKK
Sbjct: 65  KRRESVISTASDGKNDEEKKEGENQRLGERKGEKKRKRNEEVKEKSAVDGLEEDDEKAKK 124

Query: 132 LK----------KKKKKSNKKTKSGEEEKEKQGDVAGNEVKRQLEETQNNIG 141
           LK          KKK+K  KK KS EEEKEKQG   GNEV  Q+EET +NIG
Sbjct: 125 LKLKKNKMNKKKKKKQKKQKKQKSNEEEKEKQGGEDGNEVVGQVEETHDNIG 176

BLAST of Csor.00g027810 vs. ExPASy TrEMBL
Match: A0A6J1JA04 (protein gar2-like OS=Cucurbita maxima OX=3661 GN=LOC111483911 PE=4 SV=1)

HSP 1 Score: 126 bits (316), Expect = 1.83e-31
Identity = 93/176 (52.84%), Postives = 108/176 (61.36%), Query Frame = 0

Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQK REKLAESLISS+AG+ SN D SGEP+++SR ++LKELLG   RHG RLSKRE
Sbjct: 5   NKKLKQKFREKLAESLISSIAGRVSNGDVSGEPESDSRPQSLKELLGGTGRHGTRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKK--------------------------------EEDNEKAKK 131
           KRRES I TASDG  D++K                                EED+EKAKK
Sbjct: 65  KRRESFISTASDGKNDEEKKEGENQRLGERKGEKKRKRNEEVKEKSAVDGLEEDDEKAKK 124

Query: 132 LKK--------------KKKKSNKKTKSGEEEKEKQGDVAGNEVKRQLEETQNNIG 141
           LKK              KK+KSN+K K+ EEEKEKQG   GNEV  Q+EET +NIG
Sbjct: 125 LKKNKMNKKKKKKQKKQKKQKSNEKAKNSEEEKEKQGGEDGNEVLGQVEETHDNIG 180

BLAST of Csor.00g027810 vs. ExPASy TrEMBL
Match: A0A6J1CDP4 (protein gar2 OS=Momordica charantia OX=3673 GN=LOC111010281 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 5.48e-31
Identity = 91/169 (53.85%), Postives = 107/169 (63.31%), Query Frame = 0

Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQKLREKLAESLI++VAGK S  D SGEPD+ESR ++L+ELLG  + HGPRLSKRE
Sbjct: 5   NKKLKQKLREKLAESLIATVAGKDSVGDVSGEPDSESRPQSLRELLGAVSHHGPRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKKEED--------------------------------NEKAKK 131
           KRRES+   ASD   +++K+ED                                NEKAKK
Sbjct: 65  KRRESLTLVASDEKNNEEKKEDENQRLGGTKREXKRKRDEEGAEKSALDGSAENNEKAKK 124

Query: 132 LKKKKKKSNKKTK-------SGEEEKEKQGDVAGNEVKRQLEETQNNIG 141
           LKKKKKK  KKTK       +GEEEKEKQG   GNEV+  LEET +N+G
Sbjct: 125 LKKKKKKKKKKTKKSNKKADNGEEEKEKQGGEGGNEVEG-LEETHDNVG 172

BLAST of Csor.00g027810 vs. ExPASy TrEMBL
Match: A0A0A0KLT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180870 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 4.72e-28
Identity = 85/147 (57.82%), Postives = 96/147 (65.31%), Query Frame = 0

Query: 12  NKKSKQKLREKLAESLISSVAGKHSNADASGEPDTESRRETLKELLGTATRHGPRLSKRE 71
           NKK KQKLREKLAESLISSVAG+ +N   SGE DTES R++LKELLGTA+ +GPRLSKRE
Sbjct: 5   NKKLKQKLREKLAESLISSVAGRDTNFGVSGERDTESPRKSLKELLGTASGNGPRLSKRE 64

Query: 72  KRRESVIFTASDGNKDQKKE---------------------------EDNEKAKKLKKKK 121
           KRRES++ T SDGNK +KKE                           EDNEKAKKLK KK
Sbjct: 65  KRRESLVLTGSDGNKKEKKEDENQGLGEKKRKRNEGVKEKNAVDGLEEDNEKAKKLKNKK 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6601014.13.34e-83100.00hypothetical protein SDJN03_06247, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7031626.14.67e-67100.00hypothetical protein SDJN02_05667, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038891335.11.34e-4464.29protein gar2 [Benincasa hispida][more]
XP_008461639.16.61e-4161.54PREDICTED: RNA-binding protein CP31B, chloroplastic [Cucumis melo][more]
XP_031742307.14.87e-3557.14protein gar2 [Cucumis sativus] >KAE8647980.1 hypothetical protein Csa_000404 [Cu... [more]
Match NameE-valueIdentityDescription
A0A1S3CF293.20e-4161.54RNA-binding protein CP31B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500194... [more]
A0A6J1FSC31.24e-3255.23protein gar2 OS=Cucurbita moschata OX=3662 GN=LOC111447996 PE=4 SV=1[more]
A0A6J1JA041.83e-3152.84protein gar2-like OS=Cucurbita maxima OX=3661 GN=LOC111483911 PE=4 SV=1[more]
A0A6J1CDP45.48e-3153.85protein gar2 OS=Momordica charantia OX=3673 GN=LOC111010281 PE=4 SV=1[more]
A0A0A0KLT84.72e-2857.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180870 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 90..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g027810.m01Csor.00g027810.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding