Csor.00g025900 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g025900
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Extensin-like
Location	Csor_Chr04: 5235298 .. 5235672 (+)
RNA-Seq Expression	Csor.00g025900
Synteny	Csor.00g025900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTCTTCGTTCTTTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGAGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCGCCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCACCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGATTTCGCCGGTGCTGATCGAAGGAGGGTAGTCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

mRNA sequence

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTCTTCGTTCTTTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGAGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCGCCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCACCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGATTTCGCCGGTGCTGATCGAAGGAGGGTAGTCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Coding sequence (CDS)

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTCTTCGTTCTTTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGAGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCGCCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCACCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGATTTCGCCGGTGCTGATCGAAGGAGGGTAGTCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Protein sequence

MCIQTRPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIGFLGV

Homology

[Close]

BLAST of Csor.00g025900 vs. NCBI nr
Match: KAG6600825.1 (hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 240 bits (613), Expect = 8.08e-80
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60
           MCIQTRPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP
Sbjct: 1   MCIQTRPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60

Query: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120
           PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG
Sbjct: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120

Query: 121 FLGV 124
           FLGV
Sbjct: 121 FLGV 124

[Close]

BLAST of Csor.00g025900 vs. NCBI nr
Match: KAG7031461.1 (hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238 bits (607), Expect = 6.65e-79
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60
           MCIQTRPRYALFIFSF FVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP
Sbjct: 1   MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60

Query: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120
           PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG
Sbjct: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120

Query: 121 FLGV 124
           FLGV
Sbjct: 121 FLGV 124

[Close]

BLAST of Csor.00g025900 vs. NCBI nr
Match: XP_023546806.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230 bits (586), Expect = 1.10e-75
Identity = 121/125 (96.80%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFF-FVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPP 60
           MCIQTRPRYALFIFSFF F LSINVVLTHGFLSSKKLDESTGGDDP VKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRV VELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 124
           GFLGV
Sbjct: 121 GFLGV 125

[Close]

BLAST of Csor.00g025900 vs. NCBI nr
Match: XP_022942055.1 (probable glycosyltransferase 4 [Cucurbita moschata])

HSP 1 Score: 226 bits (575), Expect = 5.22e-74
Identity = 119/125 (95.20%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFFV-LSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPP 60
           MCIQTRPRYALFI SFFF  LS NVVLTHGFLSSKKLDESTGGDDP VKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRV VELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 124
           GFLGV
Sbjct: 121 GFLGV 125

[Close]

BLAST of Csor.00g025900 vs. NCBI nr
Match: KGN50831.1 (hypothetical protein Csa_004723 [Cucumis sativus])

HSP 1 Score: 151 bits (381), Expect = 1.90e-44
Identity = 82/122 (67.21%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60
           MCIQ  P Y+L I  FF +LSIN+   HGF+SSKKLDE     D  VKCTPCT   PPPP
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPPP 60

Query: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120
           PPPKKP P YCPPPP PPSSFIY+LGPP NLYPI+ DFA ADRR V +EL  VA FGLIG
Sbjct: 61  PPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLIG 120

Query: 121 FL 122
            +
Sbjct: 121 LI 122

[Close]

BLAST of Csor.00g025900 vs. ExPASy TrEMBL
Match: A0A6J1FVH5 (probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=4 SV=1)

HSP 1 Score: 226 bits (575), Expect = 2.53e-74
Identity = 119/125 (95.20%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFFV-LSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPP 60
           MCIQTRPRYALFI SFFF  LS NVVLTHGFLSSKKLDESTGGDDP VKCTPCTHNPPPP
Sbjct: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLI 120
           PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRV VELSAVALFGLI
Sbjct: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 124
           GFLGV
Sbjct: 121 GFLGV 125

[Close]

BLAST of Csor.00g025900 vs. ExPASy TrEMBL
Match: A0A0A0KSV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 9.21e-45
Identity = 82/122 (67.21%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPP 60
           MCIQ  P Y+L I  FF +LSIN+   HGF+SSKKLDE     D  VKCTPCT   PPPP
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPPP 60

Query: 61  PPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120
           PPPKKP P YCPPPP PPSSFIY+LGPP NLYPI+ DFA ADRR V +EL  VA FGLIG
Sbjct: 61  PPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLIG 120

Query: 121 FL 122
            +
Sbjct: 121 LI 122

[Close]

BLAST of Csor.00g025900 vs. ExPASy TrEMBL
Match: A0A6J1DRJ1 (acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1)

HSP 1 Score: 139 bits (350), Expect = 3.99e-40
Identity = 84/126 (66.67%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCT--HNPPP 60
           M IQT+      I +   +LSINVV  HG +SS KLD STGGD   VKCTPCT  + PPP
Sbjct: 1   MWIQTQ------ILNLLLILSINVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNPPPP 60

Query: 61  PPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGL 120
           PPPPPKKP  +YCPPPPPPPSSFIY+LGPPGNLYPI +DFAG  RRRV VEL  VAL GL
Sbjct: 61  PPPPPKKPPSSYCPPPPPPPSSFIYMLGPPGNLYPIGQDFAGG-RRRVAVELPVVALLGL 118

Query: 121 IGFLGV 124
           +GF+ V
Sbjct: 121 MGFIAV 118

[Close]

BLAST of Csor.00g025900 vs. ExPASy TrEMBL
Match: A0A6A3B336 (Extensin-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110325pilonHSYRG00114 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.74e-19
Identity = 67/135 (49.63%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 6   RPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTP-CTHNPPPPPPPP- 65
           +PR  L   + FFV++      +G L S+KLDEST   D  VKCTP C  +PPPPPP P 
Sbjct: 4   KPRRFLPSVTIFFVITTFAYPING-LESRKLDESTVPGDQGVKCTPSCIQSPPPPPPSPP 63

Query: 66  --------------KKPSPAYCPPPPPPPS--SFIYILGPPGNLYPIDRDFAGADRRRVV 121
                         KKP   YCPPPP PPS  S+IYI GPPGNLYP D+ F GADR   V
Sbjct: 64  PACPPPPALPPPTPKKPPTQYCPPPPVPPSPPSYIYITGPPGNLYPTDQSFGGADRNVAV 123

[Close]

BLAST of Csor.00g025900 vs. ExPASy TrEMBL
Match: A5B8N9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04830 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.51e-18
Identity = 55/105 (52.38%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 32  SSKKLDES--TGGDDPRVKC-------TPCTHNPPPPPPP-----PKKPSPAYCPPPPPP 91
           +S+KLDES  +G  D  VKC        PC  +PPPPPPP     PKKP   YCPPPPPP
Sbjct: 31  NSRKLDESPASGSPDAGVKCGGCSSCQNPCNQSPPPPPPPSPPPPPKKPRAPYCPPPPPP 90

Query: 92  PSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIGFL 122
           P+SF+Y+ GPPG LYPID+D+ GA R   +V L  +A  GL+  L
Sbjct: 91  PASFLYVTGPPGTLYPIDQDYGGAGRN-FMVGLPILAGCGLLNLL 134

[Close]

BLAST of Csor.00g025900 vs. TAIR 10
Match: AT1G23040.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-15
Identity = 52/110 (47.27%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 31  LSSKKLDESTGGDDPRVKCTP-CTHNPPPPPPPPKKPSPAYCPP---------------- 90
           L ++KLDE     DP +KC+P C  NPPPP PPP  P P  CPP                
Sbjct: 38  LEARKLDEV----DP-IKCSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKKVSSYC 97

Query: 91  PPPPPSSFIYILGPPGNLYPIDRDF-AGADRRRVVVELSAVALFGLIGFL 123
           PPPPP++F+YI GPPGNLYP+D  F A A +  +VV+LS +  FG++ FL
Sbjct: 98  PPPPPANFLYITGPPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIMAFL 142

[Close]

BLAST of Csor.00g025900 vs. TAIR 10
Match: AT1G70990.1 (proline-rich family protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-12
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 4   QTRPRYALFIFSFFFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHN-PPPPPPP 63
           +T+   A  + +  F+    ++      +++KL+E     DP +KCTPC  N PPP PPP
Sbjct: 45  RTKALAATLLTTVVFLTFPMIINASDSSTNRKLEE-----DP-IKCTPCLQNIPPPSPPP 104

Query: 64  PKKPSPAY-CPPP------------PPPPSSFIYILGPPGNLYPIDRDF-AGADRRRVVV 123
           P  P P+  CPPP            PPPPS++IY+ GPPG LYPID+ F A   +   VV
Sbjct: 105 PSPPPPSQACPPPPLPPSPPKKSYCPPPPSTYIYMTGPPGELYPIDQQFGAAVTKSFTVV 164

[Close]

BLAST of Csor.00g025900 vs. TAIR 10
Match: AT1G02405.1 (proline-rich family protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.4e-04
Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 45  PRVKCTPCTHNPPPPPPPPKKPS--PAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGAD 104
           P   CTP    PPP PPPPKK S  P+  PPPPPPP        PPG+LYPI+  +  A 
Sbjct: 56  PPPSCTPSP--PPPSPPPPKKSSCPPSPLPPPPPPPPPNYVFTYPPGDLYPIENYYGAA- 115

Query: 105 RRRVVVELSAVA---LFGLIGFL 123
              V VE  +V    +FG++ FL
Sbjct: 116 ---VAVESFSVMKLFVFGVMVFL 132

The following BLAST results are available for this feature:

BLAST of Csor.00g025900 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g025900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600825.1	8.08e-80	100.00	hypothetical protein SDJN03_06058, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031461.1	6.65e-79	99.19	hypothetical protein SDJN02_05501, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023546806.1	1.10e-75	96.80	formin-like protein 20 [Cucurbita pepo subsp. pepo]	[more]
XP_022942055.1	5.22e-74	95.20	probable glycosyltransferase 4 [Cucurbita moschata]	[more]
KGN50831.1	1.90e-44	67.21	hypothetical protein Csa_004723 [Cucumis sativus]	[more]

BLAST of Csor.00g025900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVH5	2.53e-74	95.20	probable glycosyltransferase 4 OS=Cucurbita moschata OX=3662 GN=LOC111447243 PE=...	[more]
A0A0A0KSV7	9.21e-45	67.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1	[more]
A0A6J1DRJ1	3.99e-40	66.67	acrosin-like OS=Momordica charantia OX=3673 GN=LOC111022525 PE=4 SV=1	[more]
A0A6A3B336	2.74e-19	49.63	Extensin-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110325pilonHSYRG00114...	[more]
A5B8N9	1.51e-18	52.38	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g04830 PE=4 SV=...	[more]

BLAST of Csor.00g025900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23040.1	4.0e-15	47.27	hydroxyproline-rich glycoprotein family protein	[more]
AT1G70990.1	1.9e-12	38.81	proline-rich family protein	[more]
AT1G02405.1	5.4e-04	45.78	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..73
None	No IPR available	PANTHER	PTHR35094	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 7..122
None	No IPR available	PANTHER	PTHR35094:SF1	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2	coord: 7..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g025900.m01	Csor.00g025900.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0016740	transferase activity