Csor.00g025460 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g025460
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	reactive Intermediate Deaminase A, chloroplastic
Location	Csor_Chr04: 4955990 .. 4958836 (-)
RNA-Seq Expression	Csor.00g025460
Synteny	Csor.00g025460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTACGCCCTCGTTTTTCTGCTTATTTCCGATCGATTCCTCTTTTGTCGTCGATCACTTTTCGCTATGGATTAGTGATTGCGGTTTTGTGTTGTACTTGACTCTTGTTTTGTCGAAACCTCGATGGATTTTGTAGGGTTTAGTTTGTGTTTCAGCTCAGTAGTTATTAGAACTTTGAAATCTGAGCGTTCTTTGCGATTAGGTATAAGCTTGGTGATTATTCTATTCACAGCGTTAACTTAGATTGGAGGATCTTTTTGGTATCCCCCCTTATGTAGAAGGGTCTCCTTGTCCCTTGGTCCGCTAGGCTGTTTTGGTCGCTTAGGCGTATTTATTCAATGAACGTGTTTAATTCTTTCCTATATATATACATATAAAGTAATGCGGAAGATAATTCTTTGGAGGCTTTCTTTTTCATAGCTGTAGATGAAAATTCTAACTTTCGGGAAGAATCAAATAATTTTTCTTTTCTAATTTTCTTTTTTATGAATGCTTATAACAGATGCATAACCACCCCTTACTAATTATTTCTTGTGTGGCAGGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGGTAGCTTCATCACTTTATTATTGTTATTTTCTATTTGATAGTGTTTATGATTTGATTAAAGGAATGTTTGGGAGTGGTTTCTCTTATATCATGCCGTTTTGAGTGGTACAAGATGATTTTGGCTATTCCAAAATCACTCCAATTCATTCCTTAAGTGGGTTTTTGGATGCCGACTTGGGCATAGCTTGGAAGGTTGAATATTTTAAAATATTGGTATGAAAAAAAAAAAAAATACAGAAGGATGGAGTGGGTTTCAGTGTGTGCGCATGTTCGTATTATTGTGCTGCCTAATAGAGTGTTTATCTTCATGTTCCAATACAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTAATGTTCATTTAGTAGGGTAGTTGCTCGTATCATGTTCATGTAAATTAAACTTTTGAGCTGGATATAAAAAATTATAAGTCAATGGAATTTGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTACGAACTTTTGGCCTCTTTTCTTTCTGATCATAATATCTTCTCTCTTTAATTTAAATAAGATCTGAATAACTAAGGAGTTGATGGTAATTGTTTTAAAACATGGTTTTCTGCTTTTGTATACTTTTAAGAACAATTTTTTGAGTGACTTATTAAAGTTAAAATAATTGTCCACAACAAACACTATTTACTAGTTATTCTGCTTGGTTCTATTTTCCATTTTTATGTTTATTCTATTTATCTAACCTTATGCTTTAACCCCGTACACTTTGTATTAAAAATCATTTGTCTGTTTCATTAGTTTTGCATAATTCATTTCAGAAACTTGACAAAGTATACCTTTTGCTAATTTACTTGATGAGTAGATTCACGAAAGTATTTAAAGCTAGATCAAGATGTAAGTCATTCTTTGAGTTCAAAATGGATAAGGCTTTCGTTAAATAAATTGTTATAATTAAATTTATAACAATTTAATCCTACCATGAAAAATCTCATAAAAACTAAGTGCCAGTTTTTATATGTAATGATTTAGACTTTCTAACTTATAAACACATTTGGTCTCTTTTTAGTTTTTCAATTTATATATGTAAGAAATTCCATTCCATCCTTATAGTATTTTTCACAGTAAGGGACTAAATGGTCTCTTGAAAAACTTGACTAAACTATTCGAAGTTTTCAAGTATAGGGACTAATGGTTACATATATAAGTTGAGAAATTGAGTTGTTTGAAACTAAACTGTTACAAACTAAAACATAGAGACTAAATTGTTACTTTTATTGAAGTTCAAGGACCAAAAGTGTTTTTAACAGCCACTTAGTAATCTTTCTAGTATTGAAAGTGTCTTTCAGAACATTCCCATGTTTTTCCTGTGATTCAGTTCTTTCTTCGCAAATCTTTCCTGCAGGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGGTAAATGTAAGTTTCGTTAAACTGAACCTTTAACCTCTGTCTTATCTAATACCGAGCATTTAATTTAGATATGCCTTTATGATCACTCTCTGTCCCCATTACGGTTCAACTTTAGTTTCTAGAATATAGTTATTTAAGTGAGTTCGAAAATTACAACTTGGATTAATTTTGTATATGATTCTACTTGGTGAAAATGATGAACTTTTCTTTTTCGCGTTCTATCTGGCTGTGTACTACTTGGTGGTCTGGTTATTTTGGGTCATGTTTCATTTACTGAAGGATAATTTATGTCCTGGTGAAGTTGTGATTCTATCTACGCTGCTTTGATATATTTTCTTGAGATAAGGATGCATTCTTCATTTTTACAGATTCAAAGCTCAAGTTGAGAGTGTTTTCACATTGTTTTGTTTGCCACTTTTTATGCAGACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGA

mRNA sequence

ATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGGTAAATACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGA

Coding sequence (CDS)

ATGGCTTGGTGTGCTGCTCGGGCTCTTCACATGCCGGCTTTGGACATCACTGCATTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGTGCTTCGGTGGCTGGAACCACCTTGTGCCGATCTTCCTCAACTTCCAAGCGCCAAATTCCCTTCGCATCCCTCAGCATTTCTACCGATGCTAGTATCAAGGAAGCTGTTAAGACTGACAAGGCTCCAGCTGCATTAGGGCCATATTCTCAGGCTATCAAAGCTAACAACCTTCTCTTTGTGTCTGGTGTCTTAGGTTTGAATCCTGAGACAGGGAAATTTGTCTCAGATGATATTGAAGGCCAGACTGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCGGCTATTCTTCCGTGGTCAAGACAACTATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAATGAGATTTATGGTAAATACTTTCCATCCCCTGCTCCTGCTCGGTCAACATATCAGGTTGCAGCGTTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATCGCTACACTTTGA

Protein sequence

MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIECIATL

Homology

[Close]

BLAST of Csor.00g025460 vs. ExPASy Swiss-Prot
Match: Q94JQ4 (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RIDA PE=1 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.3e-66
Identity = 139/190 (73.16%), Postives = 157/190 (82.63%), Query Frame = 0


Query: 1   MAWCAARALHMPALDI-TALRS-KTPL-AVGVGCASVAGTTLCRSSSTSKRQIPFASLSI 60
           M W   R+++ P LD+ TALRS +TPL A GVGCA+ AG +L R SS   R  PFASLS+
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSS---RSPPFASLSV 60

Query: 61  STDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 120
           S  +  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ +E QTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 121 KNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 180
           KNMGEILKA GA YSSVVKTTIMLADL DFK VNEIY KYFP+P+PARSTYQVAALPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 181 KVEIECIATL 188
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

[Close]

BLAST of Csor.00g025460 vs. ExPASy Swiss-Prot
Match: P52758 (2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.1e-32
Identity = 63/123 (51.22%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 63  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 122
           I+  + T KAP A+GPYSQA+  +  +++SG +G++P +G+ VS  +  + +Q LKNMGE
Sbjct: 5   IRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGE 64

Query: 123 ILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIE 182
           ILKA G  +++VVKTT++LAD+ DF  VNEIY +YF S  PAR+ YQVAALP  +++EIE
Sbjct: 65  ILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIE 124

Query: 183 CIA 186
            +A
Sbjct: 125 AVA 127

[Close]

BLAST of Csor.00g025460 vs. ExPASy Swiss-Prot
Match: Q10121 (RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 5.3e-32
Identity = 66/122 (54.10%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 64  KEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEI 123
           ++ + +  AP A+GPYSQA++A N +++SG LGL+P+TG      +E QT Q LKN+GE+
Sbjct: 41  RQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVE-QTHQSLKNLGEV 100

Query: 124 LKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIEC 183
           LKA GA Y +VVKTT++L ++ DF  VNE+YG+YF SP PAR+ YQVAALP    VEIE 
Sbjct: 101 LKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEA 160

Query: 184 IA 186
           +A
Sbjct: 161 VA 161

[Close]

BLAST of Csor.00g025460 vs. ExPASy Swiss-Prot
Match: P52760 (2-iminobutanoate/2-iminopropanoate deaminase OS=Mus musculus OX=10090 GN=Rida PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 9.1e-32
Identity = 64/123 (52.03%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 63  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 122
           I++ + T KAPAA+GPYSQA++ +  +++SG +GL+P +G+ V   +  + +Q LKN+GE
Sbjct: 5   IRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNLGE 64

Query: 123 ILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIE 182
           ILKA G  +++VVKTT++LAD+ DF  VNEIY  YF    PAR+ YQVAALP  ++VEIE
Sbjct: 65  ILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRVEIE 124

Query: 183 CIA 186
            IA
Sbjct: 125 AIA 127

[Close]

BLAST of Csor.00g025460 vs. ExPASy Swiss-Prot
Match: Q9ZKQ6 (RutC family protein jhp_0879 OS=Helicobacter pylori (strain J99 / ATCC 700824) OX=85963 GN=jhp_0879 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.7e-31
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 63  IKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGE 122
           +KE + +  AP A+GPYSQAI  N+L+FVSG LG++  TG+F   DI  QT Q ++N+  
Sbjct: 1   MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKA 60

Query: 123 ILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVEIE 182
           ILK  G G  SVVKTTI+L  L DF  VN IYG YF  P PAR+T+QVA LP DA VEIE
Sbjct: 61  ILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFKEPYPARATFQVAKLPKDALVEIE 120

Query: 183 CIA 186
            IA
Sbjct: 121 AIA 123

[Close]

BLAST of Csor.00g025460 vs. NCBI nr
Match: XP_022942433.1 (reactive Intermediate Deaminase A, chloroplastic [Cucurbita moschata] >XP_023545861.1 reactive Intermediate Deaminase A, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6600781.1 Reactive Intermediate Deaminase A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357 bits (915), Expect = 8.15e-124
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM
Sbjct: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 187
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Csor.00g025460 vs. NCBI nr
Match: XP_022976324.1 (reactive Intermediate Deaminase A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 350 bits (897), Expect = 4.52e-121
Identity = 183/187 (97.86%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTT CRSSSTSKRQIPFASL ISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTD 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
            SIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM
Sbjct: 61  TSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 187
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Csor.00g025460 vs. NCBI nr
Match: KAG7031418.1 (Reactive Intermediate Deaminase A, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344 bits (883), Expect = 5.75e-119
Identity = 184/187 (98.40%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM
Sbjct: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIY   FPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYD--FPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 187
           IECIATL
Sbjct: 181 IECIATL 185

[Close]

BLAST of Csor.00g025460 vs. NCBI nr
Match: XP_038903207.1 (reactive Intermediate Deaminase A, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 333 bits (854), Expect = 1.63e-114
Identity = 173/187 (92.51%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTTL RSSSTSKRQ+PFASL ISTD
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQMPFASLGISTD 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
            SIKEAV+TDKAPAALGPYSQAIKANNLLFVSG LGLNPETGKFVSDD+E QTEQVLKNM
Sbjct: 61  TSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFPSP+PARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPSPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 187
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Csor.00g025460 vs. NCBI nr
Match: XP_008463412.1 (PREDICTED: reactive Intermediate Deaminase A, chloroplastic-like [Cucumis melo])

HSP 1 Score: 331 bits (848), Expect = 1.33e-113
Identity = 172/187 (91.98%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCA R+ HMPA D+TALRSKTPLAVGVGC SVAGTTL RSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCATRSFHMPAFDVTALRSKTPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSD++E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDNVEDQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 187
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Csor.00g025460 vs. ExPASy TrEMBL
Match: A0A6J1FUT7 (reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447476 PE=3 SV=1)

HSP 1 Score: 357 bits (915), Expect = 3.95e-124
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM
Sbjct: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 187
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Csor.00g025460 vs. ExPASy TrEMBL
Match: A0A6J1IN69 (reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476753 PE=3 SV=1)

HSP 1 Score: 350 bits (897), Expect = 2.19e-121
Identity = 183/187 (97.86%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTT CRSSSTSKRQIPFASL ISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTD 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
            SIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM
Sbjct: 61  TSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 187
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Csor.00g025460 vs. ExPASy TrEMBL
Match: A0A1S3CJ54 (reactive Intermediate Deaminase A, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103501583 PE=3 SV=1)

HSP 1 Score: 331 bits (848), Expect = 6.46e-114
Identity = 172/187 (91.98%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCA R+ HMPA D+TALRSKTPLAVGVGC SVAGTTL RSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCATRSFHMPAFDVTALRSKTPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSD++E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDNVEDQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 187
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Csor.00g025460 vs. ExPASy TrEMBL
Match: A0A0A0L2Z6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077580 PE=3 SV=1)

HSP 1 Score: 326 bits (835), Expect = 6.19e-112
Identity = 169/187 (90.37%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCAAR  HMPA D+TALRSK+PLAVGVGC SVAGTTL RSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
           +SIKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDD+E QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGG+ YSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTY+VA LPLDAKVE
Sbjct: 121 GEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180

Query: 181 IECIATL 187
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Csor.00g025460 vs. ExPASy TrEMBL
Match: A0A6P4APP4 (reactive Intermediate Deaminase A, chloroplastic OS=Ziziphus jujuba OX=326968 GN=LOC107431842 PE=3 SV=1)

HSP 1 Score: 299 bits (765), Expect = 2.88e-101
Identity = 155/187 (82.89%), Postives = 169/187 (90.37%), Query Frame = 0


Query: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60
           MAWCAAR  ++PA+D+ ALR++ PLAVGVG ASVAG+ + RSSS+ KR  PFA L ISTD
Sbjct: 1   MAWCAARTFNVPAIDVGALRTRAPLAVGVGFASVAGSNIWRSSSSMKRSAPFACLGISTD 60

Query: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120
             IKEAVKTDKAPAALGPYSQAIKANN L+VSGVLGL PETGKFVSD++E QTEQVLKNM
Sbjct: 61  TRIKEAVKTDKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFVSDNVEDQTEQVLKNM 120

Query: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180
           GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIY KYFPSPAPARSTYQVAALPLDAK+E
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKIE 180

Query: 181 IECIATL 187
           IECIA+L
Sbjct: 181 IECIASL 187

[Close]

BLAST of Csor.00g025460 vs. TAIR 10
Match: AT3G20390.1 (endoribonuclease L-PSP family protein )

HSP 1 Score: 252.3 bits (643), Expect = 3.1e-67
Identity = 139/190 (73.16%), Postives = 157/190 (82.63%), Query Frame = 0


Query: 1   MAWCAARALHMPALDI-TALRS-KTPL-AVGVGCASVAGTTLCRSSSTSKRQIPFASLSI 60
           M W   R+++ P LD+ TALRS +TPL A GVGCA+ AG +L R SS   R  PFASLS+
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSS---RSPPFASLSV 60

Query: 61  STDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 120
           S  +  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ +E QTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 121 KNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 180
           KNMGEILKA GA YSSVVKTTIMLADL DFK VNEIY KYFP+P+PARSTYQVAALPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 181 KVEIECIATL 188
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

[Close]

BLAST of Csor.00g025460 vs. TAIR 10
Match: AT3G04480.1 (endoribonucleases )

HSP 1 Score: 41.6 bits (96), Expect = 8.2e-04
Identity = 26/100 (26.00%), Postives = 50/100 (50.00%), Query Frame = 0


Query: 72  APAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNMGEILKAGGAGY 131
           AP+ +GPYSQA    ++L ++G LGL+P T    ++    +  Q L N   I ++     
Sbjct: 424 APSCIGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSI 483

Query: 132 SSVVKTTIMLADLKDFK-KVNEIYGKYFPSPAPARSTYQV 171
           SS     ++    +  + + N+++ K+      A+S+ +V
Sbjct: 484 SSSAILFVVFCSARTKQSERNQLHEKFVTFLGLAKSSRRV 523

The following BLAST results are available for this feature:

BLAST of Csor.00g025460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JQ4	4.3e-66	73.16	Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P52758	4.1e-32	51.22	2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=...	[more]
Q10121	5.3e-32	54.10	RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 ...	[more]
P52760	9.1e-32	52.03	2-iminobutanoate/2-iminopropanoate deaminase OS=Mus musculus OX=10090 GN=Rida PE...	[more]
Q9ZKQ6	7.7e-31	56.91	RutC family protein jhp_0879 OS=Helicobacter pylori (strain J99 / ATCC 700824) O...	[more]

BLAST of Csor.00g025460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942433.1	8.15e-124	100.00	reactive Intermediate Deaminase A, chloroplastic [Cucurbita moschata] >XP_023545...	[more]
XP_022976324.1	4.52e-121	97.86	reactive Intermediate Deaminase A, chloroplastic [Cucurbita maxima]	[more]
KAG7031418.1	5.75e-119	98.40	Reactive Intermediate Deaminase A, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_038903207.1	1.63e-114	92.51	reactive Intermediate Deaminase A, chloroplastic-like [Benincasa hispida]	[more]
XP_008463412.1	1.33e-113	91.98	PREDICTED: reactive Intermediate Deaminase A, chloroplastic-like [Cucumis melo]	[more]

BLAST of Csor.00g025460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUT7	3.95e-124	100.00	reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IN69	2.19e-121	97.86	reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A1S3CJ54	6.46e-114	91.98	reactive Intermediate Deaminase A, chloroplastic-like OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0L2Z6	6.19e-112	90.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077580 PE=3 SV=1	[more]
A0A6P4APP4	2.88e-101	82.89	reactive Intermediate Deaminase A, chloroplastic OS=Ziziphus jujuba OX=326968 GN...	[more]

BLAST of Csor.00g025460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20390.1	3.1e-67	73.16	endoribonuclease L-PSP family protein	[more]
AT3G04480.1	8.2e-04	26.00	endoribonucleases	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006056	RidA family	TIGRFAM	TIGR00004	TIGR00004	coord: 64..186 e-value: 1.2E-50 score: 168.9
IPR035959	RutC-like superfamily	GENE3D	3.30.1330.40		coord: 59..186 e-value: 3.4E-49 score: 168.2
IPR035959	RutC-like superfamily	SUPERFAMILY	55298	YjgF-like	coord: 65..187
IPR006175	YjgF/YER057c/UK114 family	PFAM	PF01042	Ribonuc_L-PSP	coord: 70..186 e-value: 5.6E-42 score: 142.6
IPR006175	YjgF/YER057c/UK114 family	PANTHER	PTHR11803	2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA	coord: 1..187
None	No IPR available	PANTHER	PTHR11803:SF51	BNAA05G36080D PROTEIN	coord: 1..187
None	No IPR available	CDD	cd00448	YjgF_YER057c_UK114_family	coord: 79..185 e-value: 4.34281E-45 score: 142.697
IPR019897	RidA, conserved site	PROSITE	PS01094	UPF0076	coord: 163..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g025460.m01	Csor.00g025460.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901565	organonitrogen compound catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0019239	deaminase activity