Csor.00g025300 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g025300
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 4890412 .. 4891024 (+)
RNA-Seq Expression	Csor.00g025300
Synteny	Csor.00g025300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACTCAGCCATATCCAGAATCTGCACCCAGAAGCAGGTGGATGAGGATCACAGTAGCTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACATTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACGTACGTTACATTCTCAGCTATATAAATTATCATCCAAAACTTCTGTTTACATCTTTTAAAAACTGGGTTTTTTGTTTTGAATCAGATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAGGTTTGTAAATTTTTAGTGTTTTTACATTAAAAATCCATTCTTTGATGCAATTTTAACTGTGATTTTGGGGTTTTGGTTTTGTAGGGAAAAGAAATTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTTAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

mRNA sequence

ATGGAAAACTCAGCCATATCCAGAATCTGCACCCAGAAGCAGGTGGATGAGGATCACAGTAGCTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACATTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAGGGAAAAGAAATTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTTAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Coding sequence (CDS)

ATGGAAAACTCAGCCATATCCAGAATCTGCACCCAGAAGCAGGTGGATGAGGATCACAGTAGCTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACATTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAGGGAAAAGAAATTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTTAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Protein sequence

MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG

Homology

[Close]

BLAST of Csor.00g025300 vs. NCBI nr
Match: KAG6600765.1 (hypothetical protein SDJN03_05998, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286 bits (733), Expect = 2.24e-97
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTA 60
           MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTA
Sbjct: 1   MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTA 60

Query: 61  TSPPHPSIISDMDGLSSKQKKQQQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVG 120
           TSPPHPSIISDMDGLSSKQKKQQQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVG
Sbjct: 61  TSPPHPSIISDMDGLSSKQKKQQQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVG 120

Query: 121 RDNNCSTGLKNIGLCLVPVSMAINYFG 147
           RDNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 RDNNCSTGLKNIGLCLVPVSMAINYFG 147

[Close]

BLAST of Csor.00g025300 vs. NCBI nr
Match: KAG7031402.1 (hypothetical protein SDJN02_05442, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278 bits (712), Expect = 3.34e-94
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTA 60
           MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTA
Sbjct: 1   MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTA 60

Query: 61  TSPPHPSIISDMDGLSSKQKKQQQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVG 120
           TSPPHPSIISDMDGLSSKQKKQQQQQQ  LSAMINQTKHKGKEIEEFGEVEDRIEVGFVG
Sbjct: 61  TSPPHPSIISDMDGLSSKQKKQQQQQQ--LSAMINQTKHKGKEIEEFGEVEDRIEVGFVG 120

Query: 121 RDNNCSTGLKNIGLCLVPVSMAINYFG 147
           RDNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 RDNNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of Csor.00g025300 vs. NCBI nr
Match: XP_022941575.1 (uncharacterized protein LOC111446888 [Cucurbita moschata])

HSP 1 Score: 273 bits (698), Expect = 4.56e-92
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTA 60
           MENSAISRICTQKQVD+DHSSWTSSMDDLLLFDHSKTISYH QNAAVFSSSDDDDLQDTA
Sbjct: 1   MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTA 60

Query: 61  TSPPHPSIISDMDGLSSKQKKQQQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVG 120
           TSPPHPSIISDMDGLSSKQKKQ QQQQ  LSAMINQTKHKGKEIEEFGEVEDRIEVGFVG
Sbjct: 61  TSPPHPSIISDMDGLSSKQKKQLQQQQ--LSAMINQTKHKGKEIEEFGEVEDRIEVGFVG 120

Query: 121 RDNNCSTGLKNIGLCLVPVSMAINYFG 147
           RDNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 RDNNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of Csor.00g025300 vs. NCBI nr
Match: XP_022989755.1 (uncharacterized protein LOC111486825 [Cucurbita maxima])

HSP 1 Score: 259 bits (662), Expect = 1.41e-86
Identity = 136/148 (91.89%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDD-LQDT 60
           MENSAIS+ICTQKQVD+DHSSWTSSMDDLLLFD+SKT SYH QNAAVFSSSDDDD LQDT
Sbjct: 1   MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT 60

Query: 61  ATSPPHPSIISDMDGLSSKQKKQQQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFV 120
           ATSPPHPSIISDMDGLSSKQKKQQQQQ    +AMINQTKH+GKEIEEFGEVEDRIEVGFV
Sbjct: 61  ATSPPHPSIISDMDGLSSKQKKQQQQQH---TAMINQTKHRGKEIEEFGEVEDRIEVGFV 120

Query: 121 GRDNNCSTGLKNIGLCLVPVSMAINYFG 147
           GRDNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 GRDNNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of Csor.00g025300 vs. NCBI nr
Match: XP_011652737.2 (uncharacterized protein LOC105435073 [Cucumis sativus] >KGN56145.1 hypothetical protein Csa_009500 [Cucumis sativus])

HSP 1 Score: 148 bits (374), Expect = 2.53e-42
Identity = 101/182 (55.49%), Postives = 118/182 (64.84%), Query Frame = 0


Query: 1   MENSAISRICTQKQVD-------EDHS-SWTSSMDDLLLFD-----HSKTI--------- 60
           MENSA SRIC+ ++ D       ED S S +SSMDDLL+FD     HS +          
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SYHIQNAAVFSSSD----------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQQ 120
           S  +   A  S+S           DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+    
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR---- 120

Query: 121 QLSAMINQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAIN 146
              AM+NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+N
Sbjct: 121 ---AMMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALN 175

[Close]

BLAST of Csor.00g025300 vs. ExPASy TrEMBL
Match: A0A6J1FU25 (uncharacterized protein LOC111446888 OS=Cucurbita moschata OX=3662 GN=LOC111446888 PE=4 SV=1)

HSP 1 Score: 273 bits (698), Expect = 2.21e-92
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDDLQDTA 60
           MENSAISRICTQKQVD+DHSSWTSSMDDLLLFDHSKTISYH QNAAVFSSSDDDDLQDTA
Sbjct: 1   MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTA 60

Query: 61  TSPPHPSIISDMDGLSSKQKKQQQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVG 120
           TSPPHPSIISDMDGLSSKQKKQ QQQQ  LSAMINQTKHKGKEIEEFGEVEDRIEVGFVG
Sbjct: 61  TSPPHPSIISDMDGLSSKQKKQLQQQQ--LSAMINQTKHKGKEIEEFGEVEDRIEVGFVG 120

Query: 121 RDNNCSTGLKNIGLCLVPVSMAINYFG 147
           RDNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 RDNNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of Csor.00g025300 vs. ExPASy TrEMBL
Match: A0A6J1JN91 (uncharacterized protein LOC111486825 OS=Cucurbita maxima OX=3661 GN=LOC111486825 PE=4 SV=1)

HSP 1 Score: 259 bits (662), Expect = 6.82e-87
Identity = 136/148 (91.89%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDEDHSSWTSSMDDLLLFDHSKTISYHIQNAAVFSSSDDDD-LQDT 60
           MENSAIS+ICTQKQVD+DHSSWTSSMDDLLLFD+SKT SYH QNAAVFSSSDDDD LQDT
Sbjct: 1   MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDT 60

Query: 61  ATSPPHPSIISDMDGLSSKQKKQQQQQQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFV 120
           ATSPPHPSIISDMDGLSSKQKKQQQQQ    +AMINQTKH+GKEIEEFGEVEDRIEVGFV
Sbjct: 61  ATSPPHPSIISDMDGLSSKQKKQQQQQH---TAMINQTKHRGKEIEEFGEVEDRIEVGFV 120

Query: 121 GRDNNCSTGLKNIGLCLVPVSMAINYFG 147
           GRDNNCSTGLKNIGLCLVPVSMAINYFG
Sbjct: 121 GRDNNCSTGLKNIGLCLVPVSMAINYFG 145

[Close]

BLAST of Csor.00g025300 vs. ExPASy TrEMBL
Match: A0A0A0L2F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078270 PE=4 SV=1)

HSP 1 Score: 148 bits (374), Expect = 1.23e-42
Identity = 101/182 (55.49%), Postives = 118/182 (64.84%), Query Frame = 0


Query: 1   MENSAISRICTQKQVD-------EDHS-SWTSSMDDLLLFD-----HSKTI--------- 60
           MENSA SRIC+ ++ D       ED S S +SSMDDLL+FD     HS +          
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SYHIQNAAVFSSSD----------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQQ 120
           S  +   A  S+S           DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+    
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR---- 120

Query: 121 QLSAMINQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAIN 146
              AM+NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+N
Sbjct: 121 ---AMMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALN 175

[Close]

BLAST of Csor.00g025300 vs. ExPASy TrEMBL
Match: A0A5D3BKS2 (Putative CTD small phosphatase-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00160 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 5.69e-41
Identity = 99/182 (54.40%), Postives = 115/182 (63.19%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDE------DHSSWT--SSMDDLLLFDHSKTI---SYH-------- 60
           MENSA SRIC+  + D       +  SW+  SSMDDLL+FD   TI   SY         
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  ---IQNAAVFSSSD----------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQQ 120
              +   A  S+S           DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+    
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQR---- 120

Query: 121 QLSAMINQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAIN 146
              A INQTKHKGK  E++GEVEDRI +VG VGRDNN   CSTGLKNIGLCLVPVSMA+N
Sbjct: 121 ---ATINQTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALN 175

[Close]

BLAST of Csor.00g025300 vs. ExPASy TrEMBL
Match: A0A1S3CKU1 (uncharacterized protein LOC103501601 OS=Cucumis melo OX=3656 GN=LOC103501601 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 5.69e-41
Identity = 99/182 (54.40%), Postives = 115/182 (63.19%), Query Frame = 0


Query: 1   MENSAISRICTQKQVDE------DHSSWT--SSMDDLLLFDHSKTI---SYH-------- 60
           MENSA SRIC+  + D       +  SW+  SSMDDLL+FD   TI   SY         
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  ---IQNAAVFSSSD----------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQQQ 120
              +   A  S+S           DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+    
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQR---- 120

Query: 121 QLSAMINQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAIN 146
              A INQTKHKGK  E++GEVEDRI +VG VGRDNN   CSTGLKNIGLCLVPVSMA+N
Sbjct: 121 ---ATINQTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALN 175

The following BLAST results are available for this feature:

BLAST of Csor.00g025300 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g025300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600765.1	2.24e-97	100.00	hypothetical protein SDJN03_05998, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031402.1	3.34e-94	98.64	hypothetical protein SDJN02_05442, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022941575.1	4.56e-92	96.60	uncharacterized protein LOC111446888 [Cucurbita moschata]	[more]
XP_022989755.1	1.41e-86	91.89	uncharacterized protein LOC111486825 [Cucurbita maxima]	[more]
XP_011652737.2	2.53e-42	55.49	uncharacterized protein LOC105435073 [Cucumis sativus] >KGN56145.1 hypothetical ...	[more]

BLAST of Csor.00g025300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FU25	2.21e-92	96.60	uncharacterized protein LOC111446888 OS=Cucurbita moschata OX=3662 GN=LOC1114468...	[more]
A0A6J1JN91	6.82e-87	91.89	uncharacterized protein LOC111486825 OS=Cucurbita maxima OX=3661 GN=LOC111486825...	[more]
A0A0A0L2F7	1.23e-42	55.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078270 PE=4 SV=1	[more]
A0A5D3BKS2	5.69e-41	54.40	Putative CTD small phosphatase-like protein 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CKU1	5.69e-41	54.40	uncharacterized protein LOC103501601 OS=Cucumis melo OX=3656 GN=LOC103501601 PE=...	[more]

BLAST of Csor.00g025300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 80..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..96
None	No IPR available	PANTHER	PTHR33974:SF2	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 51..147
IPR039280	VASCULAR-RELATED UNKNOWN PROTEIN	PANTHER	PTHR33974	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 51..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g025300.m01	Csor.00g025300.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010089	xylem development