Csor.00g024680 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g024680
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 4596761 .. 4597167 (-)
RNA-Seq ExpressionCsor.00g024680
SyntenyCsor.00g024680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATATCCCCCCGCACTCGCATTCTCTTCTTCAGCACACTCTCACACTAGTGTCCGAGTGCTCCATCAACGGCCTCTTCCCTTTTGAGTGTTCGTTGCCGAAACCAAACGCTAGGTCTACCAGGCAATCGGAGGAAGTGAGAGCACAAGCGACAGGAGTTTCTCGCATCGTCTCGGTGGTGAAAAATAGAGGTGAAGTAACCTTATTTCAGTCTCTTAGTTTTATGGGTACTTTGGTCTTGCCAATTCTGTTCTGGGTTTGAAATTTTAAGGGCACAGCCGGCTATTCCGATTTATGGGTTTATTGGAAAACTTCAGAGGTTTTTCCGATTTTGGGGTTCACTGGAGAACTTCCGAGGTTAATCAAAGGATTGTTCTTTCTTTTCTTGTTTCTGCCTGTTCTTGA

mRNA sequence

ATGTATATCCCCCCGCACTCGCATTCTCTTCTTCAGCACACTCTCACACTAGTGTCCGAGTGCTCCATCAACGGCCTCTTCCCTTTTGAGTGTTCGTTGCCGAAACCAAACGCTAGGTCTACCAGGCAATCGGAGGAAGTGAGAGCACAAGCGACAGGAGTTTCTCGCATCGTCTCGGTGGTGAAAAATAGAGGGCACAGCCGGCTATTCCGATTTATGGGTTTATTGGAAAACTTCAGAGGTTTTTCCGATTTTGGGGTTCACTGGAGAACTTCCGAGGTTAATCAAAGGATTGTTCTTTCTTTTCTTGTTTCTGCCTGTTCTTGA

Coding sequence (CDS)

ATGTATATCCCCCCGCACTCGCATTCTCTTCTTCAGCACACTCTCACACTAGTGTCCGAGTGCTCCATCAACGGCCTCTTCCCTTTTGAGTGTTCGTTGCCGAAACCAAACGCTAGGTCTACCAGGCAATCGGAGGAAGTGAGAGCACAAGCGACAGGAGTTTCTCGCATCGTCTCGGTGGTGAAAAATAGAGGGCACAGCCGGCTATTCCGATTTATGGGTTTATTGGAAAACTTCAGAGGTTTTTCCGATTTTGGGGTTCACTGGAGAACTTCCGAGGTTAATCAAAGGATTGTTCTTTCTTTTCTTGTTTCTGCCTGTTCTTGA

Protein sequence

MYIPPHSHSLLQHTLTLVSECSINGLFPFECSLPKPNARSTRQSEEVRAQATGVSRIVSVVKNRGHSRLFRFMGLLENFRGFSDFGVHWRTSEVNQRIVLSFLVSACS
Homology
[Close]
BLAST of Csor.00g024680 vs. NCBI nr
Match: KAG6600703.1 (hypothetical protein SDJN03_05936, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221 bits (562), Expect = 1.49e-72
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MYIPPHSHSLLQHTLTLVSECSINGLFPFECSLPKPNARSTRQSEEVRAQATGVSRIVSV 60
           MYIPPHSHSLLQHTLTLVSECSINGLFPFECSLPKPNARSTRQSEEVRAQATGVSRIVSV
Sbjct: 1   MYIPPHSHSLLQHTLTLVSECSINGLFPFECSLPKPNARSTRQSEEVRAQATGVSRIVSV 60

Query: 61  VKNRGHSRLFRFMGLLENFRGFSDFGVHWRTSEVNQRIVLSFLVSACS 108
           VKNRGHSRLFRFMGLLENFRGFSDFGVHWRTSEVNQRIVLSFLVSACS
Sbjct: 61  VKNRGHSRLFRFMGLLENFRGFSDFGVHWRTSEVNQRIVLSFLVSACS 108

[Close]
BLAST of Csor.00g024680 vs. NCBI nr
Match: XP_022977866.1 (uncharacterized protein LOC111478006 isoform X4 [Cucurbita maxima] >XP_022977874.1 uncharacterized protein LOC111478006 isoform X4 [Cucurbita maxima] >XP_022977882.1 uncharacterized protein LOC111478006 isoform X4 [Cucurbita maxima])

HSP 1 Score: 113 bits (283), Expect = 8.12e-29
Identity = 59/73 (80.82%), Postives = 60/73 (82.19%), Query Frame = 0 

Query: 1   MYIPPHSHSLLQHTLTLVSECSINGLFPFECSLPKPNARSTRQSEEVRAQATGVSR---- 60
           +YIPPHS SLLQHTLTLVSECSINGLFP ECSLPKPNARSTRQSEE RAQA GV R    
Sbjct: 107 IYIPPHSQSLLQHTLTLVSECSINGLFPLECSLPKPNARSTRQSEEERAQAKGVERAQAK 166

Query: 61  ----IVSVVKNRG 65
               IVSVVKNRG
Sbjct: 167 GVSHIVSVVKNRG 179

[Close]
BLAST of Csor.00g024680 vs. NCBI nr
Match: XP_022977856.1 (uncharacterized protein LOC111478006 isoform X3 [Cucurbita maxima])

HSP 1 Score: 113 bits (283), Expect = 8.33e-29
Identity = 59/73 (80.82%), Postives = 60/73 (82.19%), Query Frame = 0 

Query: 1   MYIPPHSHSLLQHTLTLVSECSINGLFPFECSLPKPNARSTRQSEEVRAQATGVSR---- 60
           +YIPPHS SLLQHTLTLVSECSINGLFP ECSLPKPNARSTRQSEE RAQA GV R    
Sbjct: 107 IYIPPHSQSLLQHTLTLVSECSINGLFPLECSLPKPNARSTRQSEEERAQAKGVERAQAK 166

Query: 61  ----IVSVVKNRG 65
               IVSVVKNRG
Sbjct: 167 GVSHIVSVVKNRG 179

[Close]
BLAST of Csor.00g024680 vs. NCBI nr
Match: XP_022977832.1 (uncharacterized protein LOC111478006 isoform X2 [Cucurbita maxima] >XP_022977840.1 uncharacterized protein LOC111478006 isoform X2 [Cucurbita maxima] >XP_022977847.1 uncharacterized protein LOC111478006 isoform X2 [Cucurbita maxima])

HSP 1 Score: 111 bits (277), Expect = 1.21e-27
Identity = 58/72 (80.56%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 1   MYIPPHSHSLLQHTLTLVSECSINGLFPFECSLPKPNARSTRQSEEVRAQATGVSR---- 60
           +YIPPHS SLLQHTLTLVSECSINGLFP ECSLPKPNARSTRQSEE RAQA GV R    
Sbjct: 107 IYIPPHSQSLLQHTLTLVSECSINGLFPLECSLPKPNARSTRQSEEERAQAKGVERAQAK 166

Query: 61  ----IVSVVKNR 64
               IVSVVKNR
Sbjct: 167 GVSHIVSVVKNR 178

[Close]
BLAST of Csor.00g024680 vs. NCBI nr
Match: XP_022977821.1 (uncharacterized protein LOC111478006 isoform X1 [Cucurbita maxima])

HSP 1 Score: 111 bits (277), Expect = 1.46e-27
Identity = 58/72 (80.56%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 1   MYIPPHSHSLLQHTLTLVSECSINGLFPFECSLPKPNARSTRQSEEVRAQATGVSR---- 60
           +YIPPHS SLLQHTLTLVSECSINGLFP ECSLPKPNARSTRQSEE RAQA GV R    
Sbjct: 107 IYIPPHSQSLLQHTLTLVSECSINGLFPLECSLPKPNARSTRQSEEERAQAKGVERAQAK 166

Query: 61  ----IVSVVKNR 64
               IVSVVKNR
Sbjct: 167 GVSHIVSVVKNR 178

[Close]
BLAST of Csor.00g024680 vs. ExPASy TrEMBL
Match: A0A6J1IL57 (uncharacterized protein LOC111478006 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111478006 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 3.93e-29
Identity = 59/73 (80.82%), Postives = 60/73 (82.19%), Query Frame = 0 

Query: 1   MYIPPHSHSLLQHTLTLVSECSINGLFPFECSLPKPNARSTRQSEEVRAQATGVSR---- 60
           +YIPPHS SLLQHTLTLVSECSINGLFP ECSLPKPNARSTRQSEE RAQA GV R    
Sbjct: 107 IYIPPHSQSLLQHTLTLVSECSINGLFPLECSLPKPNARSTRQSEEERAQAKGVERAQAK 166

Query: 61  ----IVSVVKNRG 65
               IVSVVKNRG
Sbjct: 167 GVSHIVSVVKNRG 179

[Close]
BLAST of Csor.00g024680 vs. ExPASy TrEMBL
Match: A0A6J1IL47 (uncharacterized protein LOC111478006 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111478006 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 4.03e-29
Identity = 59/73 (80.82%), Postives = 60/73 (82.19%), Query Frame = 0 

Query: 1   MYIPPHSHSLLQHTLTLVSECSINGLFPFECSLPKPNARSTRQSEEVRAQATGVSR---- 60
           +YIPPHS SLLQHTLTLVSECSINGLFP ECSLPKPNARSTRQSEE RAQA GV R    
Sbjct: 107 IYIPPHSQSLLQHTLTLVSECSINGLFPLECSLPKPNARSTRQSEEERAQAKGVERAQAK 166

Query: 61  ----IVSVVKNRG 65
               IVSVVKNRG
Sbjct: 167 GVSHIVSVVKNRG 179

[Close]
BLAST of Csor.00g024680 vs. ExPASy TrEMBL
Match: A0A6J1ING1 (uncharacterized protein LOC111478006 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478006 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 5.87e-28
Identity = 58/72 (80.56%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 1   MYIPPHSHSLLQHTLTLVSECSINGLFPFECSLPKPNARSTRQSEEVRAQATGVSR---- 60
           +YIPPHS SLLQHTLTLVSECSINGLFP ECSLPKPNARSTRQSEE RAQA GV R    
Sbjct: 107 IYIPPHSQSLLQHTLTLVSECSINGLFPLECSLPKPNARSTRQSEEERAQAKGVERAQAK 166

Query: 61  ----IVSVVKNR 64
               IVSVVKNR
Sbjct: 167 GVSHIVSVVKNR 178

[Close]
BLAST of Csor.00g024680 vs. ExPASy TrEMBL
Match: A0A6J1IL14 (uncharacterized protein LOC111478006 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478006 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 7.06e-28
Identity = 58/72 (80.56%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 1   MYIPPHSHSLLQHTLTLVSECSINGLFPFECSLPKPNARSTRQSEEVRAQATGVSR---- 60
           +YIPPHS SLLQHTLTLVSECSINGLFP ECSLPKPNARSTRQSEE RAQA GV R    
Sbjct: 107 IYIPPHSQSLLQHTLTLVSECSINGLFPLECSLPKPNARSTRQSEEERAQAKGVERAQAK 166

Query: 61  ----IVSVVKNR 64
               IVSVVKNR
Sbjct: 167 GVSHIVSVVKNR 178

The following BLAST results are available for this feature:
BLAST of Csor.00g024680 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g024680 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600703.11.49e-72100.00hypothetical protein SDJN03_05936, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022977866.18.12e-2980.82uncharacterized protein LOC111478006 isoform X4 [Cucurbita maxima] >XP_022977874... [more]
XP_022977856.18.33e-2980.82uncharacterized protein LOC111478006 isoform X3 [Cucurbita maxima][more]
XP_022977832.11.21e-2780.56uncharacterized protein LOC111478006 isoform X2 [Cucurbita maxima] >XP_022977840... [more]
XP_022977821.11.46e-2780.56uncharacterized protein LOC111478006 isoform X1 [Cucurbita maxima][more]
BLAST of Csor.00g024680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IL573.93e-2980.82uncharacterized protein LOC111478006 isoform X4 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IL474.03e-2980.82uncharacterized protein LOC111478006 isoform X3 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1ING15.87e-2880.56uncharacterized protein LOC111478006 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IL147.06e-2880.56uncharacterized protein LOC111478006 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Csor.00g024680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g024680.m01Csor.00g024680.m01mRNA