Csor.00g024450 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g024450
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionGDP-L-galactose phosphorylase 1-like
LocationCsor_Chr04: 4433635 .. 4433913 (+)
RNA-Seq ExpressionCsor.00g024450
SyntenyCsor.00g024450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATTCGGATCAAAGCCTGAGCCATTCGAATCCCTTCCAGTCTTCTTCCTTCTTCGCTTCGCCCTCCTGTTTTGGCACTAACAATCCAAAAACAACCCACTACTCTCGCCTCAACGCCTCTTCCGCAAAAACCAGAATCAGATGGCGGCATCTTCTCAAAAGGTGGCTCAAGGGTCGCACCAGAGGTTACGCCTACAAGTCTTTCACCTTCCAGTACGACGCCCTTAGCTATTCCTATAACTTCGACGACGGCTCTCACAGAGTTCAGACATGA

mRNA sequence

ATGGCGGATTCGGATCAAAGCCTGAGCCATTCGAATCCCTTCCAGTCTTCTTCCTTCTTCGCTTCGCCCTCCTGTTTTGGCACTAACAATCCAAAAACAACCCACTACTCTCGCCTCAACGCCTCTTCCGCAAAAACCAGAATCAGATGGCGGCATCTTCTCAAAAGGTGGCTCAAGGGTCGCACCAGAGGTTACGCCTACAAGTCTTTCACCTTCCAGTACGACGCCCTTAGCTATTCCTATAACTTCGACGACGGCTCTCACAGAGTTCAGACATGA

Coding sequence (CDS)

ATGGCGGATTCGGATCAAAGCCTGAGCCATTCGAATCCCTTCCAGTCTTCTTCCTTCTTCGCTTCGCCCTCCTGTTTTGGCACTAACAATCCAAAAACAACCCACTACTCTCGCCTCAACGCCTCTTCCGCAAAAACCAGAATCAGATGGCGGCATCTTCTCAAAAGGTGGCTCAAGGGTCGCACCAGAGGTTACGCCTACAAGTCTTTCACCTTCCAGTACGACGCCCTTAGCTATTCCTATAACTTCGACGACGGCTCTCACAGAGTTCAGACATGA

Protein sequence

MADSDQSLSHSNPFQSSSFFASPSCFGTNNPKTTHYSRLNASSAKTRIRWRHLLKRWLKGRTRGYAYKSFTFQYDALSYSYNFDDGSHRVQT
Homology
BLAST of Csor.00g024450 vs. NCBI nr
Match: KAG6600680.1 (hypothetical protein SDJN03_05913, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187 bits (475), Expect = 8.71e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1  MADSDQSLSHSNPFQSSSFFASPSCFGTNNPKTTHYSRLNASSAKTRIRWRHLLKRWLKG 60
          MADSDQSLSHSNPFQSSSFFASPSCFGTNNPKTTHYSRLNASSAKTRIRWRHLLKRWLKG
Sbjct: 1  MADSDQSLSHSNPFQSSSFFASPSCFGTNNPKTTHYSRLNASSAKTRIRWRHLLKRWLKG 60

Query: 61 RTRGYAYKSFTFQYDALSYSYNFDDGSHRVQT 92
          RTRGYAYKSFTFQYDALSYSYNFDDGSHRVQT
Sbjct: 61 RTRGYAYKSFTFQYDALSYSYNFDDGSHRVQT 92

BLAST of Csor.00g024450 vs. NCBI nr
Match: EOX91869.1 (Uncharacterized protein TCM_000929 [Theobroma cacao])

HSP 1 Score: 65.9 bits (159), Expect = 2.41e-11
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 0

Query: 1  MADSDQSLSHSNPFQSSSFFASPSCFGTNNPKTTHYSRLN---ASSAKTRIRWRHLLKRW 60
          M+  ++ LSH   F  S    SPSCF  +  +   YSR++   +SS KTR RWR+LL+R 
Sbjct: 1  MSQMERDLSHRRSFYFSGCMMSPSCFPVH--EEMEYSRIHYRSSSSDKTRRRWRNLLRRL 60

Query: 61 LK-GRTRGYAYKSFTFQYDALSYSYNFDDGSHRVQT 92
          ++ G++  Y  K  +F YDA+SYS NFDDG H  ++
Sbjct: 61 VRDGKSSIYGSKPLSFHYDAVSYSQNFDDGCHHDES 94

BLAST of Csor.00g024450 vs. NCBI nr
Match: KAG6594915.1 (hypothetical protein SDJN03_11468, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 5.19e-10
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 13 PFQSSSFFASPSCFGTNNPKTTHYSRLNASSA-------KTRIRWRHLLKRWLKGRTRGY 72
          P+ S+   AS  CF  +  +   YSR+N           +   RWR+LL+RW+K R   Y
Sbjct: 11 PYLSACVAASSPCFPIH--EGVEYSRINGGGGGGGGGGKRIGWRWRYLLRRWMKDRMNMY 70

Query: 73 AYKSFTFQYDALSYSYNFDDGSH 88
            KS +FQYDA+SYS NFDDG H
Sbjct: 71 GTKSLSFQYDAVSYSQNFDDGCH 91

BLAST of Csor.00g024450 vs. NCBI nr
Match: PPS19339.1 (hypothetical protein GOBAR_AA01233 [Gossypium barbadense])

HSP 1 Score: 59.3 bits (142), Expect = 5.88e-09
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 0

Query: 1  MADSDQSLSHSNPFQSSSFFA---SPSCFGTNNPKTTHYSRLNASSAKTRIRWRHLLKRW 60
          M+D ++ L   +   SSSF     SPSCF  +  +   YSR++  S K R RWR+LL+R 
Sbjct: 1  MSDMERDLISRHQGGSSSFSCYTMSPSCFTVH--EDMEYSRIHYCSEKRRKRWRNLLRRL 60

Query: 61 LKGRTRG--YAYKSFTFQYDALSYSYNFDDGSHRVQT 92
          ++   +   Y+ K  +F YDA+SYS NFD+G HR ++
Sbjct: 61 VRDGNKNSKYSSKPLSFHYDAVSYSQNFDEGCHREES 95

BLAST of Csor.00g024450 vs. NCBI nr
Match: KAG6645754.1 (hypothetical protein CIPAW_08G144700 [Carya illinoinensis] >KAG6701045.1 hypothetical protein I3842_08G144400 [Carya illinoinensis])

HSP 1 Score: 59.3 bits (142), Expect = 6.75e-09
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 22 SPSCFGTNNPKTTHYSRLNASSAKTR-IRWRHLLKRWLKGRTRG-YAYKSFTFQYDALSY 81
          SPSCF   N     YSR++  S ++R  RWR+LL+R L+  T+  Y  K  +FQYDA+SY
Sbjct: 23 SPSCFPVPNDHV-EYSRIHCRSHRSRGWRWRYLLRRLLRDSTKKFYRSKPLSFQYDAVSY 82

Query: 82 SYNFDDGSHR 89
          S NFDDG HR
Sbjct: 83 SQNFDDGCHR 91

BLAST of Csor.00g024450 vs. ExPASy TrEMBL
Match: A0A061DHC4 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000929 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.17e-11
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 0

Query: 1  MADSDQSLSHSNPFQSSSFFASPSCFGTNNPKTTHYSRLN---ASSAKTRIRWRHLLKRW 60
          M+  ++ LSH   F  S    SPSCF  +  +   YSR++   +SS KTR RWR+LL+R 
Sbjct: 1  MSQMERDLSHRRSFYFSGCMMSPSCFPVH--EEMEYSRIHYRSSSSDKTRRRWRNLLRRL 60

Query: 61 LK-GRTRGYAYKSFTFQYDALSYSYNFDDGSHRVQT 92
          ++ G++  Y  K  +F YDA+SYS NFDDG H  ++
Sbjct: 61 VRDGKSSIYGSKPLSFHYDAVSYSQNFDDGCHHDES 94

BLAST of Csor.00g024450 vs. ExPASy TrEMBL
Match: A0A2P5YUV8 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA01233 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.85e-09
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 0

Query: 1  MADSDQSLSHSNPFQSSSFFA---SPSCFGTNNPKTTHYSRLNASSAKTRIRWRHLLKRW 60
          M+D ++ L   +   SSSF     SPSCF  +  +   YSR++  S K R RWR+LL+R 
Sbjct: 1  MSDMERDLISRHQGGSSSFSCYTMSPSCFTVH--EDMEYSRIHYCSEKRRKRWRNLLRRL 60

Query: 61 LKGRTRG--YAYKSFTFQYDALSYSYNFDDGSHRVQT 92
          ++   +   Y+ K  +F YDA+SYS NFD+G HR ++
Sbjct: 61 VRDGNKNSKYSSKPLSFHYDAVSYSQNFDEGCHREES 95

BLAST of Csor.00g024450 vs. ExPASy TrEMBL
Match: A0A5D2MV38 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A12G105100v1 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.12e-09
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 0

Query: 1  MADSDQSLSHSNPFQSSSFFA----SPSCFGTNNPKTTHYSRLNASSAKTRIRWRHLLKR 60
          M+D ++ L   +   SSSF      SPSCF  +  +   YSR++  S K R RWR+LL+R
Sbjct: 1  MSDMERDLISRHQGGSSSFSGCYTMSPSCFTVH--EDMEYSRIHYCSEKRRKRWRNLLRR 60

Query: 61 WLKGRTRG--YAYKSFTFQYDALSYSYNFDDGSHRVQT 92
           ++   +   Y+ K  +F YDA+SYS NFD+G HR ++
Sbjct: 61 LVRDGNKNSKYSSKPLSFHYDAVSYSQNFDEGCHREES 96

BLAST of Csor.00g024450 vs. ExPASy TrEMBL
Match: A0A5J5T7U1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G088200v1 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.12e-09
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 0

Query: 1  MADSDQSLSHSNPFQSSSFFA----SPSCFGTNNPKTTHYSRLNASSAKTRIRWRHLLKR 60
          M+D ++ L   +   SSSF      SPSCF  +  +   YSR++  S K R RWR+LL+R
Sbjct: 1  MSDMERDLISRHQGGSSSFSVCYTMSPSCFTVH--EDMEYSRIHYCSEKRRKRWRNLLRR 60

Query: 61 WLKGRTRG--YAYKSFTFQYDALSYSYNFDDGSHRVQT 92
           ++   +   Y+ K  +F YDA+SYS NFD+G HR ++
Sbjct: 61 LVRDGNKNSKYSSKPLSFHYDAVSYSQNFDEGCHREES 96

BLAST of Csor.00g024450 vs. ExPASy TrEMBL
Match: A0A5D2E8G1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G095700v1 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.12e-09
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 0

Query: 1  MADSDQSLSHSNPFQSSSFFA----SPSCFGTNNPKTTHYSRLNASSAKTRIRWRHLLKR 60
          M+D ++ L   +   SSSF      SPSCF  +  +   YSR++  S K R RWR+LL+R
Sbjct: 1  MSDMERDLISRHQGGSSSFSVCYTMSPSCFTVH--EDMEYSRIHYCSEKRRKRWRNLLRR 60

Query: 61 WLKGRTRG--YAYKSFTFQYDALSYSYNFDDGSHRVQT 92
           ++   +   Y+ K  +F YDA+SYS NFD+G HR ++
Sbjct: 61 LVRDGNKNSKYSSKPLSFHYDAVSYSQNFDEGCHREES 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6600680.18.71e-60100.00hypothetical protein SDJN03_05913, partial [Cucurbita argyrosperma subsp. sorori... [more]
EOX91869.12.41e-1142.71Uncharacterized protein TCM_000929 [Theobroma cacao][more]
KAG6594915.15.19e-1043.37hypothetical protein SDJN03_11468, partial [Cucurbita argyrosperma subsp. sorori... [more]
PPS19339.15.88e-0940.21hypothetical protein GOBAR_AA01233 [Gossypium barbadense][more]
KAG6645754.16.75e-0951.43hypothetical protein CIPAW_08G144700 [Carya illinoinensis] >KAG6701045.1 hypothe... [more]
Match NameE-valueIdentityDescription
A0A061DHC41.17e-1142.71Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000929 PE=4 SV=1[more]
A0A2P5YUV82.85e-0940.21Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA01233 PE=4 SV... [more]
A0A5D2MV384.12e-0939.80Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A12G105100v1 P... [more]
A0A5J5T7U14.12e-0939.80Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A12G088200v1 PE... [more]
A0A5D2E8G14.12e-0939.80Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G095700v1 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 7..90
NoneNo IPR availablePANTHERPTHR33168:SF6OS05G0516100 PROTEINcoord: 7..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g024450.m01Csor.00g024450.m01mRNA