Csor.00g024170 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g024170
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Dolichol-phosphate mannosyltransferase subunit 3
Location	Csor_Chr04: 4268137 .. 4268722 (+)
RNA-Seq Expression	Csor.00g024170
Synteny	Csor.00g024170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCATATAGTCAAGATTTTGACATTATTGATGGCCATATCAGCGTTGTGGATTGGCCTCTTGCAAACATCTATATTACCACATGGCCATGCATGGCTGGTGAGTTAACAGTCATTATGCTCTCAAATCCTTCATATTTATTGTCATCATTTTACTCTCGATAGGATGCTTACTGTACATGTCTTATCACACCAGCTACCCATCTATTTTATTGTCTCTCTGGGATGCTATGGTCTATTGATGGTTGGTGTCGGTCTAATGACATTTCCAACTTGTCCTAGAGAAGGACTGTTGCTACAACAGGTATTTCCCCCTCTTATTCTCACTTTGCACTTTTATATCATACTAGAGTAACTTAGTGAATAAGGCACCAATTACCATCTCAATGGTTCAATCCCGCACCCTGCATTGTTGAACTAAATAAGAAGGCTCTCTCTCTTTCTCTGGAATTTTCTTCGAATTTCCATATCTATCAGACTGGAAGATACGTACAAACATCTCAGCCTGAGTTCCTTTTGTGTAGGACATTGATGAAGCCAAAGAACACCTTAAGCAAAAAGGGATTGACATAAATTCTAATTGA

mRNA sequence

ATGAAGCATATAGTCAAGATTTTGACATTATTGATGGCCATATCAGCGTTGTGGATTGGCCTCTTGCAAACATCTATATTACCACATGGCCATGCATGGCTGCTACCCATCTATTTTATTGTCTCTCTGGGATGCTATGGTCTATTGATGGTTGGTGTCGGTCTAATGACATTTCCAACTTGTCCTAGAGAAGGACTGTTGCTACAACAGGACATTGATGAAGCCAAAGAACACCTTAAGCAAAAAGGGATTGACATAAATTCTAATTGA

Coding sequence (CDS)

ATGAAGCATATAGTCAAGATTTTGACATTATTGATGGCCATATCAGCGTTGTGGATTGGCCTCTTGCAAACATCTATATTACCACATGGCCATGCATGGCTGCTACCCATCTATTTTATTGTCTCTCTGGGATGCTATGGTCTATTGATGGTTGGTGTCGGTCTAATGACATTTCCAACTTGTCCTAGAGAAGGACTGTTGCTACAACAGGACATTGATGAAGCCAAAGAACACCTTAAGCAAAAAGGGATTGACATAAATTCTAATTGA

Protein sequence

MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPTCPREGLLLQQDIDEAKEHLKQKGIDINSN

Homology

[Close]

BLAST of Csor.00g024170 vs. ExPASy Swiss-Prot
Match: Q8LEQ4 (Dolichol-phosphate mannose synthase subunit 3 OS=Arabidopsis thaliana OX=3702 GN=DPMS3 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-32
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKIL+LL+AISA WIGLLQ +I+P  H WLLPIYF+VSLGCYGLLMVGVGLM FPT
Sbjct: 1  MKHIVKILSLLVAISAFWIGLLQAAIIPRSHTWLLPIYFVVSLGCYGLLMVGVGLMQFPT 60

Query: 61 CPREGLLLQQDIDEAKEHLKQKGIDINSN 90
          CP+E +LLQ+DI EAK+  K KG+D+ SN
Sbjct: 61 CPQEAVLLQKDIAEAKDFFKHKGVDVGSN 89

[Close]

BLAST of Csor.00g024170 vs. NCBI nr
Match: XP_022941635.1 (dolichol-phosphate mannose synthase subunit 3-like isoform X2 [Cucurbita moschata] >XP_023531536.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita pepo subsp. pepo] >XP_023531544.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita pepo subsp. pepo] >KAG6600652.1 Dolichol-phosphate mannose synthase subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178 bits (451), Expect = 3.22e-56
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60

Query: 61 CPREGLLLQQDIDEAKEHLKQKGIDINSN 89
          CPREGLLLQQDIDEAKEHLKQKGIDINSN
Sbjct: 61 CPREGLLLQQDIDEAKEHLKQKGIDINSN 89

[Close]

BLAST of Csor.00g024170 vs. NCBI nr
Match: XP_022941634.1 (dolichol-phosphate mannose synthase subunit 3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 178 bits (451), Expect = 8.51e-56
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
           MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 32  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 91

Query: 61  CPREGLLLQQDIDEAKEHLKQKGIDINSN 89
           CPREGLLLQQDIDEAKEHLKQKGIDINSN
Sbjct: 92  CPREGLLLQQDIDEAKEHLKQKGIDINSN 120

[Close]

BLAST of Csor.00g024170 vs. NCBI nr
Match: XP_022992118.1 (dolichol-phosphate mannose synthase subunit 3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 177 bits (448), Expect = 9.24e-56
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60

Query: 61 CPREGLLLQQDIDEAKEHLKQKGIDINSN 89
          CPREG+LLQQDIDEAKEHLKQKGIDINSN
Sbjct: 61 CPREGVLLQQDIDEAKEHLKQKGIDINSN 89

[Close]

BLAST of Csor.00g024170 vs. NCBI nr
Match: XP_022992110.1 (dolichol-phosphate mannose synthase subunit 3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 177 bits (448), Expect = 2.44e-55
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
           MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 32  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 91

Query: 61  CPREGLLLQQDIDEAKEHLKQKGIDINSN 89
           CPREG+LLQQDIDEAKEHLKQKGIDINSN
Sbjct: 92  CPREGVLLQQDIDEAKEHLKQKGIDINSN 120

[Close]

BLAST of Csor.00g024170 vs. NCBI nr
Match: XP_022985162.1 (dolichol-phosphate mannose synthase subunit 3-like [Cucurbita maxima] >XP_022985164.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita maxima] >XP_022985165.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita maxima] >XP_022985166.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita maxima] >KAG7015388.1 Dolichol-phosphate mannose synthase subunit 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170 bits (431), Expect = 3.63e-53
Identity = 82/89 (92.13%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKILTLL+A+SALWIGLLQ SI+PHGHAWLLPIYFIVSLGCYGLLMVG+GLMTFPT
Sbjct: 1  MKHIVKILTLLVAVSALWIGLLQASIIPHGHAWLLPIYFIVSLGCYGLLMVGIGLMTFPT 60

Query: 61 CPREGLLLQQDIDEAKEHLKQKGIDINSN 89
          CPREGLLLQQDIDEAKE+LKQKG+DINSN
Sbjct: 61 CPREGLLLQQDIDEAKEYLKQKGVDINSN 89

[Close]

BLAST of Csor.00g024170 vs. ExPASy TrEMBL
Match: A0A6J1FU86 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111446935 PE=3 SV=1)

HSP 1 Score: 178 bits (451), Expect = 1.56e-56
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60

Query: 61 CPREGLLLQQDIDEAKEHLKQKGIDINSN 89
          CPREGLLLQQDIDEAKEHLKQKGIDINSN
Sbjct: 61 CPREGLLLQQDIDEAKEHLKQKGIDINSN 89

[Close]

BLAST of Csor.00g024170 vs. ExPASy TrEMBL
Match: A0A6J1FP02 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111446935 PE=3 SV=1)

HSP 1 Score: 178 bits (451), Expect = 4.12e-56
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
           MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 32  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 91

Query: 61  CPREGLLLQQDIDEAKEHLKQKGIDINSN 89
           CPREGLLLQQDIDEAKEHLKQKGIDINSN
Sbjct: 92  CPREGLLLQQDIDEAKEHLKQKGIDINSN 120

[Close]

BLAST of Csor.00g024170 vs. ExPASy TrEMBL
Match: A0A6J1JY89 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111488551 PE=3 SV=1)

HSP 1 Score: 177 bits (448), Expect = 4.47e-56
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60

Query: 61 CPREGLLLQQDIDEAKEHLKQKGIDINSN 89
          CPREG+LLQQDIDEAKEHLKQKGIDINSN
Sbjct: 61 CPREGVLLQQDIDEAKEHLKQKGIDINSN 89

[Close]

BLAST of Csor.00g024170 vs. ExPASy TrEMBL
Match: A0A6J1JUT1 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111488551 PE=3 SV=1)

HSP 1 Score: 177 bits (448), Expect = 1.18e-55
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
           MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 32  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 91

Query: 61  CPREGLLLQQDIDEAKEHLKQKGIDINSN 89
           CPREG+LLQQDIDEAKEHLKQKGIDINSN
Sbjct: 92  CPREGVLLQQDIDEAKEHLKQKGIDINSN 120

[Close]

BLAST of Csor.00g024170 vs. ExPASy TrEMBL
Match: A0A6J1J444 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111483250 PE=3 SV=1)

HSP 1 Score: 170 bits (431), Expect = 1.76e-53
Identity = 82/89 (92.13%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKILTLL+A+SALWIGLLQ SI+PHGHAWLLPIYFIVSLGCYGLLMVG+GLMTFPT
Sbjct: 1  MKHIVKILTLLVAVSALWIGLLQASIIPHGHAWLLPIYFIVSLGCYGLLMVGIGLMTFPT 60

Query: 61 CPREGLLLQQDIDEAKEHLKQKGIDINSN 89
          CPREGLLLQQDIDEAKE+LKQKG+DINSN
Sbjct: 61 CPREGLLLQQDIDEAKEYLKQKGVDINSN 89

[Close]

BLAST of Csor.00g024170 vs. TAIR 10
Match: AT1G48140.1 (dolichol-phosphate mannosyltransferase-related )

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-33
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKIL+LL+AISA WIGLLQ +I+P  H WLLPIYF+VSLGCYGLLMVGVGLM FPT
Sbjct: 1  MKHIVKILSLLVAISAFWIGLLQAAIIPRSHTWLLPIYFVVSLGCYGLLMVGVGLMQFPT 60

Query: 61 CPREGLLLQQDIDEAKEHLKQKGIDINSN 90
          CP+E +LLQ+DI EAK+  K KG+D+ SN
Sbjct: 61 CPQEAVLLQKDIAEAKDFFKHKGVDVGSN 89

[Close]

BLAST of Csor.00g024170 vs. TAIR 10
Match: AT1G48140.2 (dolichol-phosphate mannosyltransferase-related )

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-26
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKIL+LL+AISA WIGLLQ +I+P  H WLLPIYF+VSLGCYGLLMVGVGLM FPT
Sbjct: 1  MKHIVKILSLLVAISAFWIGLLQAAIIPRSHTWLLPIYFVVSLGCYGLLMVGVGLMQFPT 60

Query: 61 CPREGLLLQQ 71
          CP+E +LLQ+
Sbjct: 61 CPQEAVLLQK 70

The following BLAST results are available for this feature:

BLAST of Csor.00g024170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LEQ4	1.9e-32	74.16	Dolichol-phosphate mannose synthase subunit 3 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Csor.00g024170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941635.1	3.22e-56	100.00	dolichol-phosphate mannose synthase subunit 3-like isoform X2 [Cucurbita moschat...	[more]
XP_022941634.1	8.51e-56	100.00	dolichol-phosphate mannose synthase subunit 3-like isoform X1 [Cucurbita moschat...	[more]
XP_022992118.1	9.24e-56	98.88	dolichol-phosphate mannose synthase subunit 3-like isoform X2 [Cucurbita maxima]	[more]
XP_022992110.1	2.44e-55	98.88	dolichol-phosphate mannose synthase subunit 3-like isoform X1 [Cucurbita maxima]	[more]
XP_022985162.1	3.63e-53	92.13	dolichol-phosphate mannose synthase subunit 3-like [Cucurbita maxima] >XP_022985...	[more]

BLAST of Csor.00g024170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FU86	1.56e-56	100.00	Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1FP02	4.12e-56	100.00	Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JY89	4.47e-56	98.88	Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1JUT1	1.18e-55	98.88	Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1J444	1.76e-53	92.13	Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Csor.00g024170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48140.1	1.4e-33	74.16	dolichol-phosphate mannosyltransferase-related	[more]
AT1G48140.2	1.2e-26	78.57	dolichol-phosphate mannosyltransferase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013174	Dolichol-phosphate mannosyltransferase subunit 3	PFAM	PF08285	DPM3	coord: 1..85 e-value: 1.5E-22 score: 79.6
IPR013174	Dolichol-phosphate mannosyltransferase subunit 3	PANTHER	PTHR16433	DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 3	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g024170.m01	Csor.00g024170.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006506	GPI anchor biosynthetic process
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0033185	dolichol-phosphate-mannose synthase complex
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0016757	glycosyltransferase activity