Csor.00g024030 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTAATGATATCTTTCTTTCGTATTGGGATTGGGAGGCTACTTGAGCTGGAGACAAATAGGTACCTACTTGAGCCTCTCACTTTTCACATAGGACAATGAAGCATAGCGTGGATGAAAACTTCGAAATTTCTAAATCCCATAACCCCTTTTGTTTGCTTCTCCAATGAATCTTTCTTTGTGCATCCTGGAATAGCCTAAGTCACAACCTTTATGCGGATTTCCTTACCATCTGTTCCTTCAGTCCTATAAGCCCTTCCATGCTCTGTTCTTCACTTCTTTAAACATTCCGACTCACCAAGGACACTGACTTGGCTGTGTTCATTGTCTGACCCCTCGCTTTCTCCTCGTCTTTTACACACTTCTTTGATTGCATGCCTCTCCTATATGCTGTTCTTCCAAGAAGAAAATGGTGTCATCTGTAAAAAAAAATGAGATGAGTTAAAGTAGGACAAAAGTTTGCCAAGAGGTGGAACCTAAGTAGTTTTGCTTTTGGTCTCTCAAAAAGTCTCATACGAATGGAGATAGTAATCCTTACTTATAAATTCACGATCTTCTTAATTAATCAATGTAGAACTCCTTACCACCATCCTCAACGTAGTGAAATTAAATCTCTAGAAGCAAGGTAATTCTGATACGAGCGTTAAAATTATTGTTAAAATCACTTTTGTTACGTTCAACATCACTCTAAAATATGTCGGATATGAGCGTTGATAGGTAGAGGAAGAATCTGGAAATGGAAGACAGGATCCGGCATCTCCTACCTTGATTTAAAAGCAAAGGTGGAAGGGATATTAAAGTCGACCTCCGACTATCCCTGCATTTGGATCTGCTAATTCCAATGCCATTTTTTTAGCTCTTTTATTTAGCTGTTTCACATGCACTCACAGCCTACACATTTCTTCTCTTCTTAAAACTCAGTTCTTACAAAATTTATAAATTATGGAGAACAGAATGGAAACGTAGCTAATAAATCAAATAAACAAGTGGTGACTGCGAAAGTGAAGGGGGAAAGCACGTTGCAGCATTTATGGTTTCACACAAATCCAAGTCTCTCCATTGCCTTTTAAATATGACCAAACAAATGGACCCTCTTAAACCTCTCCTCCTCATTTTCTTCATCTTCTTTGTCTGTCATTTGCAGAGTTACAGCTATGGCAGCTGCTGTTGCTAATCTTTTTTGGATATTGATTGGCGTTTGTTTTGTGGTGGCGGCCTCTGCGCAGCCTCTGCAGAAGCCATTCATCGTCAATGGCTGCGTCTACTGTGACACTTGTCGCTGTGGCTTCGAGACCAACGCCTCCACTCCCATCTCTGGTTTGTATAATTCATCCAACCCTTGCTATTAAATAGAAGCTGTTAGTGATTCTTAGTTGGTTTAAAAGGCTGAAATCAAATGAAACAGGTGCAATAGTGAGACTTGAATGCAGAGACAGAGCCAAATGGGTGTTGAAGTTCAGCAAAAAAGCCATCACCAATTCTGAAGGAAAATACACCATTCCTGTCTCTTACGATCACAAGGATGAGAGCTGCAAGATGGTTCTTGTGAGCAGCCCTCATCCCACCTGCAACCAGCCCGACCTCGGCCGAAACAGCGCCACCGTCATCCTCACCAACAACAATGGCCTCACCAACAATGTTCGCTATGCCAATGCCATGGGCTTCTTTACTCAACGCCCTCTCGCTCTCTGCCCCTCCCTCCTCAAACAATATCTCGACTACGACGAGTCGTTGTAA ATGCTAATGATATCTTTCTTTCGTATTGGGATTGGGAGGCTACTTGAGCTGGAGACAAATAGAGTTACAGCTATGGCAGCTGCTGTTGCTAATCTTTTTTGGATATTGATTGGCGTTTGTTTTGTGGTGGCGGCCTCTGCGCAGCCTCTGCAGAAGCCATTCATCGTCAATGGCTGCGTCTACTGTGACACTTGTCGCTGTGGCTTCGAGACCAACGCCTCCACTCCCATCTCTGGTGCAATAGTGAGACTTGAATGCAGAGACAGAGCCAAATGGGTGTTGAAGTTCAGCAAAAAAGCCATCACCAATTCTGAAGGAAAATACACCATTCCTGTCTCTTACGATCACAAGGATGAGAGCTGCAAGATGGTTCTTGTGAGCAGCCCTCATCCCACCTGCAACCAGCCCGACCTCGGCCGAAACAGCGCCACCGTCATCCTCACCAACAACAATGGCCTCACCAACAATGTTCGCTATGCCAATGCCATGGGCTTCTTTACTCAACGCCCTCTCGCTCTCTGCCCCTCCCTCCTCAAACAATATCTCGACTACGACGAGTCGTTGTAA ATGCTAATGATATCTTTCTTTCGTATTGGGATTGGGAGGCTACTTGAGCTGGAGACAAATAGAGTTACAGCTATGGCAGCTGCTGTTGCTAATCTTTTTTGGATATTGATTGGCGTTTGTTTTGTGGTGGCGGCCTCTGCGCAGCCTCTGCAGAAGCCATTCATCGTCAATGGCTGCGTCTACTGTGACACTTGTCGCTGTGGCTTCGAGACCAACGCCTCCACTCCCATCTCTGGTGCAATAGTGAGACTTGAATGCAGAGACAGAGCCAAATGGGTGTTGAAGTTCAGCAAAAAAGCCATCACCAATTCTGAAGGAAAATACACCATTCCTGTCTCTTACGATCACAAGGATGAGAGCTGCAAGATGGTTCTTGTGAGCAGCCCTCATCCCACCTGCAACCAGCCCGACCTCGGCCGAAACAGCGCCACCGTCATCCTCACCAACAACAATGGCCTCACCAACAATGTTCGCTATGCCAATGCCATGGGCTTCTTTACTCAACGCCCTCTCGCTCTCTGCCCCTCCCTCCTCAAACAATATCTCGACTACGACGAGTCGTTGTAA MLMISFFRIGIGRLLELETNRVTAMAAAVANLFWILIGVCFVVAASAQPLQKPFIVNGCVYCDTCRCGFETNASTPISGAIVRLECRDRAKWVLKFSKKAITNSEGKYTIPVSYDHKDESCKMVLVSSPHPTCNQPDLGRNSATVILTNNNGLTNNVRYANAMGFFTQRPLALCPSLLKQYLDYDESL Homology
BLAST of Csor.00g024030 vs. ExPASy Swiss-Prot
Match: Q9LX15 (Protein DOWNSTREAM OF FLC OS=Arabidopsis thaliana OX=3702 GN=DFC PE=2 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 4.7e-28 Identity = 70/156 (44.87%), Postives = 91/156 (58.33%), Query Frame = 0
BLAST of Csor.00g024030 vs. ExPASy Swiss-Prot
Match: Q8LGR0 (Pollen allergen Che a 1 OS=Chenopodium album OX=3559 PE=1 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 7.5e-26 Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 0
BLAST of Csor.00g024030 vs. ExPASy Swiss-Prot
Match: P33050 (Pollen-specific protein C13 OS=Zea mays OX=4577 GN=MGS1 PE=2 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 7.5e-26 Identity = 61/154 (39.61%), Postives = 99/154 (64.29%), Query Frame = 0
BLAST of Csor.00g024030 vs. ExPASy Swiss-Prot
Match: Q29W25 (Pollen allergen Cro s 1 OS=Crocus sativus OX=82528 PE=1 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 9.8e-26 Identity = 64/157 (40.76%), Postives = 93/157 (59.24%), Query Frame = 0
BLAST of Csor.00g024030 vs. ExPASy Swiss-Prot
Match: E2D0Z0 (Pollen allergen Sal k 5.0101 (Fragment) OS=Kali turgidum OX=151250 PE=1 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 4.1e-24 Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 0
BLAST of Csor.00g024030 vs. NCBI nr
Match: KAG6600638.1 (Protein DOWNSTREAM OF FLC, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031274.1 Protein DOWNSTREAM OF FLC, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 382 bits (981), Expect = 7.58e-134 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
BLAST of Csor.00g024030 vs. NCBI nr
Match: XP_022941733.1 (protein DOWNSTREAM OF FLC-like [Cucurbita moschata]) HSP 1 Score: 340 bits (871), Expect = 1.93e-117 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Csor.00g024030 vs. NCBI nr
Match: XP_022983080.1 (major pollen allergen Lol p 11-like [Cucurbita maxima]) HSP 1 Score: 337 bits (865), Expect = 1.59e-116 Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of Csor.00g024030 vs. NCBI nr
Match: XP_023525170.1 (protein DOWNSTREAM OF FLC-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 330 bits (847), Expect = 8.23e-114 Identity = 159/161 (98.76%), Postives = 159/161 (98.76%), Query Frame = 0
BLAST of Csor.00g024030 vs. NCBI nr
Match: XP_023525161.1 (protein DOWNSTREAM OF FLC-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 298 bits (763), Expect = 6.70e-101 Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Csor.00g024030 vs. ExPASy TrEMBL
Match: A0A6J1FSY1 (protein DOWNSTREAM OF FLC-like OS=Cucurbita moschata OX=3662 GN=LOC111447011 PE=3 SV=1) HSP 1 Score: 340 bits (871), Expect = 9.36e-118 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Csor.00g024030 vs. ExPASy TrEMBL
Match: A0A6J1J4Q1 (major pollen allergen Lol p 11-like OS=Cucurbita maxima OX=3661 GN=LOC111481731 PE=3 SV=1) HSP 1 Score: 337 bits (865), Expect = 7.70e-117 Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0
BLAST of Csor.00g024030 vs. ExPASy TrEMBL
Match: A0A6J1C4Z4 (protein DOWNSTREAM OF FLC OS=Momordica charantia OX=3673 GN=LOC111008410 PE=3 SV=1) HSP 1 Score: 273 bits (697), Expect = 3.21e-91 Identity = 131/164 (79.88%), Postives = 148/164 (90.24%), Query Frame = 0
BLAST of Csor.00g024030 vs. ExPASy TrEMBL
Match: A0A5A7SZE2 (Major pollen allergen Lol p 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005880 PE=3 SV=1) HSP 1 Score: 245 bits (626), Expect = 1.95e-80 Identity = 118/162 (72.84%), Postives = 135/162 (83.33%), Query Frame = 0
BLAST of Csor.00g024030 vs. ExPASy TrEMBL
Match: A0A1S3BYB8 (major pollen allergen Lol p 11-like OS=Cucumis melo OX=3656 GN=LOC103494419 PE=3 SV=1) HSP 1 Score: 245 bits (626), Expect = 1.95e-80 Identity = 118/162 (72.84%), Postives = 135/162 (83.33%), Query Frame = 0
BLAST of Csor.00g024030 vs. TAIR 10
Match: AT4G08685.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 130.2 bits (326), Expect = 1.8e-30 Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 0
BLAST of Csor.00g024030 vs. TAIR 10
Match: AT5G10130.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 125.9 bits (315), Expect = 3.3e-29 Identity = 70/156 (44.87%), Postives = 91/156 (58.33%), Query Frame = 0
BLAST of Csor.00g024030 vs. TAIR 10
Match: AT1G29140.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 109.4 bits (272), Expect = 3.2e-24 Identity = 60/158 (37.97%), Postives = 90/158 (56.96%), Query Frame = 0
BLAST of Csor.00g024030 vs. TAIR 10
Match: AT5G45880.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 108.2 bits (269), Expect = 7.2e-24 Identity = 60/157 (38.22%), Postives = 88/157 (56.05%), Query Frame = 0
BLAST of Csor.00g024030 vs. TAIR 10
Match: AT4G18596.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 105.1 bits (261), Expect = 6.1e-23 Identity = 61/163 (37.42%), Postives = 89/163 (54.60%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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