Csor.00g024010 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g024010
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DUF740 domain-containing protein
Location	Csor_Chr04: 4188494 .. 4188907 (-)
RNA-Seq Expression	Csor.00g024010
Synteny	Csor.00g024010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAATCGGAGTCGGCGAAAGAATGCAAGAGGCACCCAAATCACAGACTCCTGCCCGGAATTTGCCCTTCTTGTCTCCGAGAAAGTCTTCAACGCTTCAATAATCAATCTTCAATCTATTCCGATTCTGTTTCCACCTTCTCTTCTTCTTCCTCTTCCTTTCCTCACTCCTCCGAGTTTTTCTTCTCCGGCGACTCTCCTCGGCGGCCACGCCACCATCACAAGAGGAACGCCTCCGAGATGGTCATGAGGTCGAGGGCGGCGGATTTGTTTGGGGATGAGCTGAAGATGGGCGGCGAGGAAGGGAAGAAGAAAGGTGGGTTTTGGTCGAGATTGATGGGTGGGCGGAAGGCGTTTCATTTCCATTTCCATTCCCATCCCAAAGTTTCTTGTAGGGAAATTATGGGTTAG

mRNA sequence

ATGGGGAAATCGGAGTCGGCGAAAGAATGCAAGAGGCACCCAAATCACAGACTCCTGCCCGGAATTTGCCCTTCTTGTCTCCGAGAAAGTCTTCAACGCTTCAATAATCAATCTTCAATCTATTCCGATTCTGTTTCCACCTTCTCTTCTTCTTCCTCTTCCTTTCCTCACTCCTCCGAGTTTTTCTTCTCCGGCGACTCTCCTCGGCGGCCACGCCACCATCACAAGAGGAACGCCTCCGAGATGGTCATGAGGTCGAGGGCGGCGGATTTGTTTGGGGATGAGCTGAAGATGGGCGGCGAGGAAGGGAAGAAGAAAGGTGGGTTTTGGTCGAGATTGATGGGTGGGCGGAAGGCGTTTCATTTCCATTTCCATTCCCATCCCAAAGTTTCTTGTAGGGAAATTATGGGTTAG

Coding sequence (CDS)

ATGGGGAAATCGGAGTCGGCGAAAGAATGCAAGAGGCACCCAAATCACAGACTCCTGCCCGGAATTTGCCCTTCTTGTCTCCGAGAAAGTCTTCAACGCTTCAATAATCAATCTTCAATCTATTCCGATTCTGTTTCCACCTTCTCTTCTTCTTCCTCTTCCTTTCCTCACTCCTCCGAGTTTTTCTTCTCCGGCGACTCTCCTCGGCGGCCACGCCACCATCACAAGAGGAACGCCTCCGAGATGGTCATGAGGTCGAGGGCGGCGGATTTGTTTGGGGATGAGCTGAAGATGGGCGGCGAGGAAGGGAAGAAGAAAGGTGGGTTTTGGTCGAGATTGATGGGTGGGCGGAAGGCGTTTCATTTCCATTTCCATTCCCATCCCAAAGTTTCTTGTAGGGAAATTATGGGTTAG

Protein sequence

MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSEFFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMGGEEGKKKGGFWSRLMGGRKAFHFHFHSHPKVSCREIMG

Homology

[Close]

BLAST of Csor.00g024010 vs. NCBI nr
Match: KAG6600636.1 (hypothetical protein SDJN03_05869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281 bits (718), Expect = 2.05e-95
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE
Sbjct: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60

Query: 61  FFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMGGEEGKKKGGFWSRLMGGRKAF 120
           FFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMGGEEGKKKGGFWSRLMGGRKAF
Sbjct: 61  FFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMGGEEGKKKGGFWSRLMGGRKAF 120

Query: 121 HFHFHSHPKVSCREIMG 137
           HFHFHSHPKVSCREIMG
Sbjct: 121 HFHFHSHPKVSCREIMG 137

[Close]

BLAST of Csor.00g024010 vs. NCBI nr
Match: KAG7031272.1 (hypothetical protein SDJN02_05312, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264 bits (674), Expect = 8.93e-89
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE
Sbjct: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60

Query: 61  FFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMGGEEGKKKGGFWSRLMGGRKAF 120
           FFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMGGE GKKKGGFWSRLMGGRKAF
Sbjct: 61  FFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMGGEGGKKKGGFWSRLMGGRKAF 120

Query: 121 HFHFHSHPKVS 131
           HFHFHSHPKVS
Sbjct: 121 HFHFHSHPKVS 131

[Close]

BLAST of Csor.00g024010 vs. NCBI nr
Match: XP_023544931.1 (uncharacterized protein LOC111804380 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256 bits (654), Expect = 1.11e-85
Identity = 128/137 (93.43%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MGKSESAK+CKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE
Sbjct: 1   MGKSESAKDCKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60

Query: 61  FFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMGGEEGKKKGGFWSRLMGGRKAF 120
           FFFSGDSPRR RHHHKRNASEMVMRSRAADLFGD++KMGGE GKKKGGFWSRLMGGRKAF
Sbjct: 61  FFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKVKMGGEGGKKKGGFWSRLMGGRKAF 120

Query: 121 HFHFHSHPKVSCREIMG 137
           HFH  S PKV CREIMG
Sbjct: 121 HFH--SQPKVCCREIMG 135

[Close]

BLAST of Csor.00g024010 vs. NCBI nr
Match: XP_022989609.1 (uncharacterized protein LOC111486643 [Cucurbita maxima])

HSP 1 Score: 255 bits (651), Expect = 3.18e-85
Identity = 128/137 (93.43%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDS STFSSSSSSFPHSSE
Sbjct: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSASTFSSSSSSFPHSSE 60

Query: 61  FFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMGGEEGKKKGGFWSRLMGGRKAF 120
           FFFSGDSPRR RHHHKRNASEMVMRSRAADLFGD+LKM GE GKKKGGFWSRLMGGRKAF
Sbjct: 61  FFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKLKMSGEGGKKKGGFWSRLMGGRKAF 120

Query: 121 HFHFHSHPKVSCREIMG 137
           HFH  S PKVSCREI+G
Sbjct: 121 HFH--SQPKVSCREIIG 135

[Close]

BLAST of Csor.00g024010 vs. NCBI nr
Match: XP_023553119.1 (uncharacterized protein LOC111810620 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144 bits (363), Expect = 2.89e-41
Identity = 89/149 (59.73%), Postives = 99/149 (66.44%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MGKSESA+ECKRH NH  LPGICPSCLRE LQ+    S  YSDS ST   SSSSF  SSE
Sbjct: 1   MGKSESARECKRHQNHNQLPGICPSCLRERLQQLQQSSISYSDSRST---SSSSFLKSSE 60

Query: 61  FFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKM------------GGEEGKKKGG 120
            FFSG++  R RH   RNASE+V  S AADLFGD++K             GG  GKKK G
Sbjct: 61  SFFSGNTSWRRRH--TRNASELVTGSMAADLFGDKVKKSSSIRISADGGGGGGGGKKKVG 120

Query: 121 FWSRLMGGRKAFHFHFHSHPKVSCREIMG 137
           FWSR +   KA +FH  SHPKVS REI+G
Sbjct: 121 FWSRFLVRPKALYFH--SHPKVSSREILG 142

[Close]

BLAST of Csor.00g024010 vs. ExPASy TrEMBL
Match: A0A6J1JPT9 (uncharacterized protein LOC111486643 OS=Cucurbita maxima OX=3661 GN=LOC111486643 PE=4 SV=1)

HSP 1 Score: 255 bits (651), Expect = 1.54e-85
Identity = 128/137 (93.43%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDS STFSSSSSSFPHSSE
Sbjct: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSASTFSSSSSSFPHSSE 60

Query: 61  FFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMGGEEGKKKGGFWSRLMGGRKAF 120
           FFFSGDSPRR RHHHKRNASEMVMRSRAADLFGD+LKM GE GKKKGGFWSRLMGGRKAF
Sbjct: 61  FFFSGDSPRRTRHHHKRNASEMVMRSRAADLFGDKLKMSGEGGKKKGGFWSRLMGGRKAF 120

Query: 121 HFHFHSHPKVSCREIMG 137
           HFH  S PKVSCREI+G
Sbjct: 121 HFH--SQPKVSCREIIG 135

[Close]

BLAST of Csor.00g024010 vs. ExPASy TrEMBL
Match: A0A6J1JAI6 (uncharacterized protein LOC111483218 OS=Cucurbita maxima OX=3661 GN=LOC111483218 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 3.82e-41
Identity = 92/151 (60.93%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSI-YSDSVSTFSSSSSSFPHSS 60
           MGKSESAKECKRH NH  LPGICPSCLRE LQ+    SSI YSDS ST   SSSSF  SS
Sbjct: 56  MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQSSSINYSDSRST---SSSSFLKSS 115

Query: 61  EFFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKM-------------GGEEGKKK 120
           E FFSG++  R RH   RNASE+V  S AADLFGD++K              GG  GKKK
Sbjct: 116 ESFFSGNTSWRRRH--TRNASELVTGSMAADLFGDKVKKSSSIRISADGGGGGGGGGKKK 175

Query: 121 GGFWSRLMGGRKAFHFHFHSHPKVSCREIMG 137
            GFWSR +   KA +FH  SHPKVS REI+G
Sbjct: 176 VGFWSRFLVRPKALYFH--SHPKVSSREILG 199

[Close]

BLAST of Csor.00g024010 vs. ExPASy TrEMBL
Match: A0A0A0KZB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026920 PE=4 SV=1)

HSP 1 Score: 142 bits (357), Expect = 8.41e-41
Identity = 85/135 (62.96%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MGKSESAKECKRHPNH LLPGICPSCLRE LQ+F+ QS  YSDS STFSS SSS   SS+
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFH-QSPNYSDSQSTFSSPSSS---SSD 60

Query: 61  FFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMGGE-------------EGKKKG 120
           FFFS DS RR R HH+RNASE V  S A DL  D+LK  G              +GKKK 
Sbjct: 61  FFFSADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKL 120

Query: 121 GFWSRLMGGRKAFHF 122
           GFWSRL+   KA +F
Sbjct: 121 GFWSRLLLRPKALYF 131

[Close]

BLAST of Csor.00g024010 vs. ExPASy TrEMBL
Match: A0A6J1ETY8 (uncharacterized protein LOC111435907 OS=Cucurbita moschata OX=3662 GN=LOC111435907 PE=4 SV=1)

HSP 1 Score: 141 bits (356), Expect = 1.43e-40
Identity = 87/145 (60.00%), Postives = 97/145 (66.90%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MGKSESAKECKRH NH  LPGICPSCLRE LQ+    S  Y+DS ST   SSSSF  SSE
Sbjct: 1   MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQSSISYADSRST---SSSSFLKSSE 60

Query: 61  FFFSGDSPRRPRHHHKRNASEMVMRSRAADLFGDELKMG--------GEEGKKKGGFWSR 120
            FFSG++  R RH   RNASE+   S AADLFGD++K          G  GKKK GFWSR
Sbjct: 61  SFFSGNTSWRRRH--TRNASELFTGSMAADLFGDKVKKSSSIRISADGGGGKKKVGFWSR 120

Query: 121 LMGGRKAFHFHFHSHPKVSCREIMG 137
            +   KA +FH  SHPKVS REI+G
Sbjct: 121 FLVRPKALYFH--SHPKVSSREILG 138

[Close]

BLAST of Csor.00g024010 vs. ExPASy TrEMBL
Match: A0A5A7TS78 (DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004740 PE=4 SV=1)

HSP 1 Score: 139 bits (349), Expect = 1.42e-39
Identity = 85/136 (62.50%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFSSSSSSFPHSSE 60
           MGKSESAKECKRHPN+ LLPGICPSCLRE LQ+F+ QS  YSDS STFSS SSS   SS+
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFH-QSPNYSDSQSTFSSPSSS---SSD 60

Query: 61  FFFSGDSPRRPR-HHHKRNASEMVMRSRAADLFGDELKMGGE-------------EGKKK 120
           FFFS DS RR R HHH+RNASE V  S A DL  D+LK  G              +GKKK
Sbjct: 61  FFFSADSSRRHRRHHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGGTGAGVKGKKK 120

Query: 121 GGFWSRLMGGRKAFHF 122
            GFWSRL+   KA +F
Sbjct: 121 LGFWSRLLLRPKALYF 132

[Close]

BLAST of Csor.00g024010 vs. TAIR 10
Match: AT1G22470.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72240.1); Has 1693 Blast hits to 236 proteins in 54 species: Archae - 0; Bacteria - 8; Metazoa - 451; Fungi - 116; Plants - 94; Viruses - 2; Other Eukaryotes - 1022 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 7.1e-05
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 10  CKRHPNHRLLPGICPSCLRESLQRFNNQSSIYSDSVSTFS-----SSSSSFPHSSEFFFS 65
           CK+HP HR  PGIC  CL ESL + +++   YS S+S+ S     SS SS    SE  FS
Sbjct: 41  CKKHPKHRQSPGICSLCLNESLSKLSSEFYDYSSSMSSSSLAKTMSSCSSASSESESDFS 100

The following BLAST results are available for this feature:

BLAST of Csor.00g024010 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g024010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600636.1	2.05e-95	100.00	hypothetical protein SDJN03_05869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031272.1	8.93e-89	99.24	hypothetical protein SDJN02_05312, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023544931.1	1.11e-85	93.43	uncharacterized protein LOC111804380 [Cucurbita pepo subsp. pepo]	[more]
XP_022989609.1	3.18e-85	93.43	uncharacterized protein LOC111486643 [Cucurbita maxima]	[more]
XP_023553119.1	2.89e-41	59.73	uncharacterized protein LOC111810620 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g024010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPT9	1.54e-85	93.43	uncharacterized protein LOC111486643 OS=Cucurbita maxima OX=3661 GN=LOC111486643...	[more]
A0A6J1JAI6	3.82e-41	60.93	uncharacterized protein LOC111483218 OS=Cucurbita maxima OX=3661 GN=LOC111483218...	[more]
A0A0A0KZB2	8.41e-41	62.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026920 PE=4 SV=1	[more]
A0A6J1ETY8	1.43e-40	60.00	uncharacterized protein LOC111435907 OS=Cucurbita moschata OX=3662 GN=LOC1114359...	[more]
A0A5A7TS78	1.42e-39	62.50	DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of Csor.00g024010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22470.1	7.1e-05	46.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008004	Protein OCTOPUS-like	PFAM	PF05340	DUF740	coord: 6..70 e-value: 6.1E-6 score: 25.2
None	No IPR available	PANTHER	PTHR34046	OS06G0218800 PROTEIN	coord: 3..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g024010.m01	Csor.00g024010.m01	mRNA