Csor.00g023890 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g023890
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 4113380 .. 4113595 (+)
RNA-Seq ExpressionCsor.00g023890
SyntenyCsor.00g023890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCCATCGGAGCTTCCTACGCCAAGATTCACCTTCTACAAAAGCAACAGAAGGAGAAGCTCGAGAGGATGGAAGCGGATCGAATATCCCGGGGCGAGGCCGTCACTGCCGCCAGCTCCGGTGGCGGTTCTTTGCTTGCAAGGAAGAACAAAGTTCACCCGGGAAGCATTGCTCCGGCAGCTGCTGCCGACAGCTACAAAAACAGGACATGA

mRNA sequence

ATGTCATCCATCGGAGCTTCCTACGCCAAGATTCACCTTCTACAAAAGCAACAGAAGGAGAAGCTCGAGAGGATGGAAGCGGATCGAATATCCCGGGGCGAGGCCGTCACTGCCGCCAGCTCCGGTGGCGGTTCTTTGCTTGCAAGGAAGAACAAAGTTCACCCGGGAAGCATTGCTCCGGCAGCTGCTGCCGACAGCTACAAAAACAGGACATGA

Coding sequence (CDS)

ATGTCATCCATCGGAGCTTCCTACGCCAAGATTCACCTTCTACAAAAGCAACAGAAGGAGAAGCTCGAGAGGATGGAAGCGGATCGAATATCCCGGGGCGAGGCCGTCACTGCCGCCAGCTCCGGTGGCGGTTCTTTGCTTGCAAGGAAGAACAAAGTTCACCCGGGAAGCATTGCTCCGGCAGCTGCTGCCGACAGCTACAAAAACAGGACATGA

Protein sequence

MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAASSGGGSLLARKNKVHPGSIAPAAAADSYKNRT
Homology
BLAST of Csor.00g023890 vs. NCBI nr
Match: KAG6600624.1 (hypothetical protein SDJN03_05857, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132 bits (332), Expect = 1.30e-38
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAASSGGGSLLARKNKVHPGSIAP 60
          MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAASSGGGSLLARKNKVHPGSIAP
Sbjct: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAASSGGGSLLARKNKVHPGSIAP 60

Query: 61 AAAADSYKNRT 71
          AAAADSYKNRT
Sbjct: 61 AAAADSYKNRT 71

BLAST of Csor.00g023890 vs. NCBI nr
Match: KAE8649159.1 (hypothetical protein Csa_014463, partial [Cucumis sativus])

HSP 1 Score: 104 bits (259), Expect = 2.43e-27
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAA-SSGGGSLLARKNKVHPGSIA 60
          MSS+GASYAKIHLLQKQQKEKLERME +R SRGE  TA  SS GGSLLAR  KVHPGSIA
Sbjct: 11 MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPGSIA 70

Query: 61 PAAAADSYKNRT 71
          P    DSYKNRT
Sbjct: 71 PTTTVDSYKNRT 82

BLAST of Csor.00g023890 vs. NCBI nr
Match: KAG6577271.1 (hypothetical protein SDJN03_24845, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100 bits (249), Expect = 5.84e-26
Identity = 59/72 (81.94%), Postives = 61/72 (84.72%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAASSGGG-SLLARKNKVHPGSIA 60
          MSSIGASYAKIHLLQKQQK+KLE MEA+R SRGEA  A SSGGG SLLAR NKVHPGSIA
Sbjct: 1  MSSIGASYAKIHLLQKQQKDKLESMEANRPSRGEAAAATSSGGGGSLLARSNKVHPGSIA 60

Query: 61 PAAAADSYKNRT 71
          P A  DS KNRT
Sbjct: 61 PVA--DSNKNRT 70

BLAST of Csor.00g023890 vs. NCBI nr
Match: PON65265.1 (hypothetical protein PanWU01x14_117820 [Parasponia andersonii])

HSP 1 Score: 58.5 bits (140), Expect = 2.36e-09
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGE------AVTAASSGGGSLLARKNKVH 58
          MSSIGAS A ++++QK+QKEK+ERME +R  RGE      A +  S GG + L R  K+H
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGRSGGGSNTLGRSKKIH 60

BLAST of Csor.00g023890 vs. NCBI nr
Match: EOX92223.1 (Uncharacterized protein TCM_001203 [Theobroma cacao])

HSP 1 Score: 57.4 bits (137), Expect = 7.99e-09
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAASSGGGSLLARKNKVHPGSI 58
          MSSIGAS A+++L++K+QKEK++RME +R+ RGE  T         +  ++KVHPG+ 
Sbjct: 1  MSSIGASCAEVYLMRKRQKEKMKRMEEERVKRGETTTGIEERKAGTIVGRSKVHPGNF 58

BLAST of Csor.00g023890 vs. ExPASy TrEMBL
Match: A0A2N9EUS9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.43e-10
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAASSGGGSLLARKNKVHPG 56
          MSSIGAS A+I++++K+QKEKL+RME +R+ +GE+    S   GS + R  KVHPG
Sbjct: 1  MSSIGASCAEIYVMRKRQKEKLKRMEEERVRKGESSVEESKVSGSTIGRSKKVHPG 56

BLAST of Csor.00g023890 vs. ExPASy TrEMBL
Match: A0A2P5CW36 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_117820 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.14e-09
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGE------AVTAASSGGGSLLARKNKVH 58
          MSSIGAS A ++++QK+QKEK+ERME +R  RGE      A +  S GG + L R  K+H
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGRSGGGSNTLGRSKKIH 60

BLAST of Csor.00g023890 vs. ExPASy TrEMBL
Match: A0A061DQL6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001203 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.87e-09
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAASSGGGSLLARKNKVHPGSI 58
          MSSIGAS A+++L++K+QKEK++RME +R+ RGE  T         +  ++KVHPG+ 
Sbjct: 1  MSSIGASCAEVYLMRKRQKEKMKRMEEERVKRGETTTGIEERKAGTIVGRSKVHPGNF 58

BLAST of Csor.00g023890 vs. ExPASy TrEMBL
Match: I1MYV6 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G020300 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.79e-08
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAASSGGGSLLARKNKVHPGS 57
          MSSIGA  A+I++++K+QKEKL+RME +R+ RGE  T       S +  KNKVHPGS
Sbjct: 1  MSSIGARSAEIYVMEKRQKEKLKRMEVERVRRGEVSTEERKVASSSVG-KNKVHPGS 56

BLAST of Csor.00g023890 vs. ExPASy TrEMBL
Match: A0A445FMY7 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_047262 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.79e-08
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAASSGGGSLLARKNKVHPGS 57
          MSSIGA  A+I++++K+QKEKL+RME +R+ RGE  T       S +  KNKVHPGS
Sbjct: 1  MSSIGARSAEIYVMEKRQKEKLKRMEVERVRRGEVSTEERKVASSSVG-KNKVHPGS 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6600624.11.30e-38100.00hypothetical protein SDJN03_05857, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8649159.12.43e-2779.17hypothetical protein Csa_014463, partial [Cucumis sativus][more]
KAG6577271.15.84e-2681.94hypothetical protein SDJN03_24845, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON65265.12.36e-0950.00hypothetical protein PanWU01x14_117820 [Parasponia andersonii][more]
EOX92223.17.99e-0946.55Uncharacterized protein TCM_001203 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
A0A2N9EUS93.43e-1053.57Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1[more]
A0A2P5CW361.14e-0950.00Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_117820 PE... [more]
A0A061DQL63.87e-0946.55Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001203 PE=4 SV=1[more]
I1MYV61.79e-0854.39Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G020300 PE=4 SV=1[more]
A0A445FMY71.79e-0854.39Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_047262 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..71
NoneNo IPR availablePANTHERPTHR34950OS04G0457400 PROTEINcoord: 1..68
NoneNo IPR availablePANTHERPTHR34950:SF2BNAC01G00560D PROTEINcoord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g023890.m01Csor.00g023890.m01mRNA