Csor.00g023540 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g023540
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	dehydrin DHN1-like
Location	Csor_Chr04: 3924542 .. 3925183 (-)
RNA-Seq Expression	Csor.00g023540
Synteny	Csor.00g023540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCATTTCCAATCTGGAACCGATCAGTATGGCAACCCCGTTCGCCAGACTGATGAATATGGCAACGTGATCCATGGGACCGGTCAGCACGTCGACCCGCATCACCGGACCGGTGAGTTCCGTGAGACGGATCAGTATGGCAACCCGGTTCGACGGGGCGGGGAGTACGGTGACCCGATCGGCACTGGTGGGACGTATGAGACTGGTGGGCACGGTGGCGTGGGTTATGGCGGAGGACACCAGCAGCAGCATATGGGTTATGGCGGAGGACACCAGCAGCAGCATAAGGAGCATGGGGGAGTACTTCGTCGCTCTGGAAGCTCTAGTAGTTCCAGCTCGGTAAAATTTCATGTTATATGATTATTTTCGTACGTCAGTGTAAAAGAAACGATTTTTGAGTTTATAATAATAATGAGGTTGAAATTTCAGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAAGAGAAGATAAAGGAGAAGCTGCCGGGGCATCATGACACGGCGCAGCAGCCACAGGCGACATCAACCACCACACCTGGCGGGTACTCTTCGGTGGAGCACGGCGGCCAACACGAGAAGAAGGGGATAATGGATAAGATCAAGGAGAAGTTGCCGGGACATAACTGA

mRNA sequence

ATGTCGCATTTCCAATCTGGAACCGATCAGTATGGCAACCCCGTTCGCCAGACTGATGAATATGGCAACGTGATCCATGGGACCGGTCAGCACGTCGACCCGCATCACCGGACCGGTGAGTTCCGTGAGACGGATCAGTATGGCAACCCGGTTCGACGGGGCGGGGAGTACGGTGACCCGATCGGCACTGGTGGGACGTATGAGACTGGTGGGCACGGTGGCGTGGGTTATGGCGGAGGACACCAGCAGCAGCATATGGGTTATGGCGGAGGACACCAGCAGCAGCATAAGGAGCATGGGGGAGTACTTCGTCGCTCTGGAAGCTCTAGTAGTTCCAGCTCGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAAGAGAAGATAAAGGAGAAGCTGCCGGGGCATCATGACACGGCGCAGCAGCCACAGGCGACATCAACCACCACACCTGGCGGGTACTCTTCGGTGGAGCACGGCGGCCAACACGAGAAGAAGGGGATAATGGATAAGATCAAGGAGAAGTTGCCGGGACATAACTGA

Coding sequence (CDS)

ATGTCGCATTTCCAATCTGGAACCGATCAGTATGGCAACCCCGTTCGCCAGACTGATGAATATGGCAACGTGATCCATGGGACCGGTCAGCACGTCGACCCGCATCACCGGACCGGTGAGTTCCGTGAGACGGATCAGTATGGCAACCCGGTTCGACGGGGCGGGGAGTACGGTGACCCGATCGGCACTGGTGGGACGTATGAGACTGGTGGGCACGGTGGCGTGGGTTATGGCGGAGGACACCAGCAGCAGCATATGGGTTATGGCGGAGGACACCAGCAGCAGCATAAGGAGCATGGGGGAGTACTTCGTCGCTCTGGAAGCTCTAGTAGTTCCAGCTCGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAAGAGAAGATAAAGGAGAAGCTGCCGGGGCATCATGACACGGCGCAGCAGCCACAGGCGACATCAACCACCACACCTGGCGGGTACTCTTCGGTGGAGCACGGCGGCCAACACGAGAAGAAGGGGATAATGGATAAGATCAAGGAGAAGTTGCCGGGACATAACTGA

Protein sequence

MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDPIGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN

Homology

[Close]

BLAST of Csor.00g023540 vs. ExPASy Swiss-Prot
Match: P30185 (Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.5e-26
Identity = 95/190 (50.00%), Postives = 110/190 (57.89%), Query Frame = 0


Query: 8   TDQYGNPVRQT-DEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDPIGTGGT 67
           TD+YGNP++Q  DEYGN + G G                 YG     G   G   GTGG 
Sbjct: 13  TDEYGNPIQQQYDEYGNPMGGGG-----------------YGTGGGGGATGGQGYGTGGQ 72

Query: 68  -YETGGH----GGVGYGGGHQQQHMGYGG-----GHQQQHKEH----GGVLRRSGSSSSS 127
            Y +GG     GG GYG G   +  G GG     G +Q HKE     GG+L RSG S SS
Sbjct: 73  GYGSGGQGYGTGGQGYGTGTGTEGFGTGGGARHHGQEQLHKESGGGLGGMLHRSG-SGSS 132

Query: 128 SSSEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQ-HEKKGI 182
           SSSEDDG GGRRKKG+ +KIKEKLPGHHD + Q QA       GY +  +GG+ HEKKG+
Sbjct: 133 SSSEDDGQGGRRKKGITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGM 183

[Close]

BLAST of Csor.00g023540 vs. ExPASy Swiss-Prot
Match: Q2R4Z7 (Dehydrin Rab16C OS=Oryza sativa subsp. japonica OX=39947 GN=RAB16C PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-21
Identity = 82/159 (51.57%), Postives = 90/159 (56.60%), Query Frame = 0


Query: 45  DQYGNPVRRGGEYGDPIGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEH--GGV 104
           D YGNPV   G+YG     G T   GGHG +G GG     H G GG  Q   +EH  GG+
Sbjct: 16  DVYGNPV--AGQYGG----GATAPGGGHGVMGMGG----HHAGAGGQFQPVKEEHKTGGI 75

Query: 105 LRRSGSSSSSSSSEDDGHGGRRKKGLKEKIKEKLP-GHHDTAQQPQATSTTTPGGYS--- 164
           L RSGSSSSSSSSEDDG GGRRKKG+KEKIKEKLP G+    QQ Q     T G Y    
Sbjct: 76  LHRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNQQQQQMMGNTGGAYGQQG 135

Query: 165 --------------SVEHGGQHEKKGIMDKIKEKLPGHN 184
                           E+G   EKKG MDKIKEKLPG +
Sbjct: 136 HAGMTGAGTGTGVHGAEYGNTGEKKGFMDKIKEKLPGQH 164

[Close]

BLAST of Csor.00g023540 vs. ExPASy Swiss-Prot
Match: A2ZDX6 (Dehydrin Rab16C OS=Oryza sativa subsp. indica OX=39946 GN=RAB16C PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-21
Identity = 82/159 (51.57%), Postives = 91/159 (57.23%), Query Frame = 0


Query: 45  DQYGNPVRRGGEYGDPIGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEH--GGV 104
           D YGNPV   G+YG     G T   GGHG +G GG     H G GG  Q   +EH  GG+
Sbjct: 16  DVYGNPV--AGQYGG----GATAPGGGHGVMGMGG----HHAGAGGQFQPVKEEHKTGGI 75

Query: 105 LRRSGSSSSSSSSEDDGHGGRRKKGLKEKIKEKLPGHH--DTAQQPQATSTT-------- 164
           L RSGSSSSSSSSEDDG GGRRKKG+KEKIKEKLPG +  +  QQ Q    T        
Sbjct: 76  LHRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNHQQQQMMGNTGGAYGQQG 135

Query: 165 --------TPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 184
                   T  G    E+G   EKKG MDKIKEKLPG +
Sbjct: 136 HAGMTGAGTGTGVHGAEYGNTGEKKGFMDKIKEKLPGQH 164

[Close]

BLAST of Csor.00g023540 vs. ExPASy Swiss-Prot
Match: A8CVF3 (Dehydrin DHN1 OS=Avicennia marina OX=82927 GN=DHN1 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-21
Identity = 95/199 (47.74%), Postives = 103/199 (51.76%), Query Frame = 0


Query: 8   TDQYGNPVRQTDEYG----------------NVIHGTGQHVDPHHRTGEFRETDQYGNPV 67
           TD+YGNP+RQT E+G                 V +GT Q V     T   ++TDQYG P 
Sbjct: 12  TDEYGNPIRQTGEFGATGAYGANQQYGTTGTTVGYGTDQCVTT--VTTGAQKTDQYGTPG 71

Query: 68  RRGGEYGDPIGTGGTY-ETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSS 127
             G    D  GT GT  E G HGG    G       G GGGH           RR G SS
Sbjct: 72  TTGAYGTDQYGTTGTTGEYGTHGGGIAPGATDAGLAGGGGGH-----------RRLG-SS 131

Query: 128 SSSSSEDDGHGGRRKKGLKEKIKEKLP--GHHDTAQQPQATSTTTPGGYSSVEHGG---- 182
            SSSSEDDG GGRRKKG+KEKIKEKLP  GH D    P    +   GGY   EHGG    
Sbjct: 132 GSSSSEDDGQGGRRKKGIKEKIKEKLPGGGHGDDQTHPTPPGS---GGY-GYEHGGAAES 191

[Close]

BLAST of Csor.00g023540 vs. ExPASy Swiss-Prot
Match: A2ZDX8 (Dehydrin Rab16B OS=Oryza sativa subsp. indica OX=39946 GN=RAB16B PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 9.2e-21
Identity = 80/159 (50.31%), Postives = 91/159 (57.23%), Query Frame = 0


Query: 45  DQYGNPVRRGGEYGDPIGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQ----QQHKEHG 104
           D YGNPV   G+YG     G T   GGHG +G GG     H G G G Q    ++ ++ G
Sbjct: 16  DVYGNPV-GAGQYGG----GATAPGGGHGAMGMGG-----HAGAGAGGQFQPAREDRKTG 75

Query: 105 GVLRRSGSSSSSSSSEDDGHGGRRKKGLKEKIKEKLP-GHHDTAQQPQATSTTTPGGYS- 164
           G+L RSGSSSSSSSSEDDG GGRRKKG+KEKIKEKLP G+    QQ Q     T G Y  
Sbjct: 76  GILHRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNQQQQQMMGNTGGAYGQ 135

Query: 165 --------------SVEHGGQHEKKGIMDKIKEKLPGHN 184
                           E+G   EKKG MDKIKEKLPG +
Sbjct: 136 QGHAGMTGAGTGVHGAEYGNAGEKKGFMDKIKEKLPGQH 164

[Close]

BLAST of Csor.00g023540 vs. NCBI nr
Match: KAG6600589.1 (Dehydrin Xero 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031229.1 Dehydrin Xero 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370 bits (949), Expect = 3.93e-129
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDP 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDP
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDP 60

Query: 61  IGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGH 120
           IGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGH
Sbjct: 61  IGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGH 120

Query: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP 180
           GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP
Sbjct: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP 180

Query: 181 GHN 183
           GHN
Sbjct: 181 GHN 183

[Close]

BLAST of Csor.00g023540 vs. NCBI nr
Match: XP_022942609.1 (dehydrin Rab16B-like [Cucurbita moschata])

HSP 1 Score: 335 bits (858), Expect = 2.01e-115
Identity = 170/183 (92.90%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDP 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQ VDPHHRTGEFRETDQYGNPVRRGGEYGDP
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQRVDPHHRTGEFRETDQYGNPVRRGGEYGDP 60

Query: 61  IGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGH 120
           IGTGGTYETGGHGGVGYGGGHQQQH           KEHGGVLRRSGSSSSSSSSEDDGH
Sbjct: 61  IGTGGTYETGGHGGVGYGGGHQQQH-----------KEHGGVLRRSGSSSSSSSSEDDGH 120

Query: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP 180
           GGRRKKGLKEKIKEKLPGHHDTAQQP ATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP
Sbjct: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP 172

Query: 181 GHN 183
           GHN
Sbjct: 181 GHN 172

[Close]

BLAST of Csor.00g023540 vs. NCBI nr
Match: XP_022983036.1 (dehydrin DHN1-like [Cucurbita maxima])

HSP 1 Score: 334 bits (857), Expect = 2.85e-115
Identity = 168/183 (91.80%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDP 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFR+TDQYGNPVRRGGEYG+P
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEP 60

Query: 61  IGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGH 120
           IGTGGTYETGGHGGVGYGGGHQQQH           KEHGG+LRRSGSSSSSSSSEDDGH
Sbjct: 61  IGTGGTYETGGHGGVGYGGGHQQQH-----------KEHGGILRRSGSSSSSSSSEDDGH 120

Query: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP 180
           GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQ+EKKGIMDKIKEKLP
Sbjct: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLP 172

Query: 181 GHN 183
           GHN
Sbjct: 181 GHN 172

[Close]

BLAST of Csor.00g023540 vs. NCBI nr
Match: XP_023550338.1 (dehydrin Rab18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327 bits (837), Expect = 3.55e-112
Identity = 168/186 (90.32%), Postives = 169/186 (90.86%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTG---EFRETDQYGNPVRRGGEY 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTG   EFRETDQYGNP+RRGGEY
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEY 60

Query: 61  GDPIGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSSSSSED 120
           GD IGTGGTYETGGHGGVGYGGGH QQH           KEHGGVLRRSGSSSSSSSSED
Sbjct: 61  GDRIGTGGTYETGGHGGVGYGGGHHQQH-----------KEHGGVLRRSGSSSSSSSSED 120

Query: 121 DGHGGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKE 180
           DGHGGRRKKGLKEKIKEKLPGHHDTAQQP ATSTTTPGGYSSVEHGGQHEKKGIMDKIKE
Sbjct: 121 DGHGGRRKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKE 175

Query: 181 KLPGHN 183
           KLPGHN
Sbjct: 181 KLPGHN 175

[Close]

BLAST of Csor.00g023540 vs. NCBI nr
Match: XP_038902571.1 (dehydrin Xero 1-like [Benincasa hispida])

HSP 1 Score: 252 bits (644), Expect = 7.89e-83
Identity = 137/186 (73.66%), Postives = 152/186 (81.72%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDP 60
           M+H+QSGTDQYGNP+RQTDEYGNVI  T Q+ DP  RTGEFRETDQYGNPV R  E+G+P
Sbjct: 1   MAHYQSGTDQYGNPIRQTDEYGNVISDTAQYGDPLRRTGEFRETDQYGNPVHRTDEFGNP 60

Query: 61  I--GTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDD 120
           I  GTGGTYETGG+GG GYGG H QQH           KEHGG+L RSGSSSSSSS EDD
Sbjct: 61  ISTGTGGTYETGGYGGTGYGGEHHQQH-----------KEHGGILHRSGSSSSSSS-EDD 120

Query: 121 GHGGRR-KKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKE 180
           GHGGRR KKGLKEK+KEK+PGHH    +PQA STTTPGGYSS ++GGQHEKKGIM+KIKE
Sbjct: 121 GHGGRRRKKGLKEKVKEKMPGHH---HEPQAMSTTTPGGYSSAQYGGQHEKKGIMEKIKE 171

Query: 181 KLPGHN 183
           KLPGH+
Sbjct: 181 KLPGHH 171

[Close]

BLAST of Csor.00g023540 vs. ExPASy TrEMBL
Match: A0A6J1FRT8 (dehydrin Rab16B-like OS=Cucurbita moschata OX=3662 GN=LOC111447593 PE=3 SV=1)

HSP 1 Score: 335 bits (858), Expect = 9.71e-116
Identity = 170/183 (92.90%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDP 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQ VDPHHRTGEFRETDQYGNPVRRGGEYGDP
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQRVDPHHRTGEFRETDQYGNPVRRGGEYGDP 60

Query: 61  IGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGH 120
           IGTGGTYETGGHGGVGYGGGHQQQH           KEHGGVLRRSGSSSSSSSSEDDGH
Sbjct: 61  IGTGGTYETGGHGGVGYGGGHQQQH-----------KEHGGVLRRSGSSSSSSSSEDDGH 120

Query: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP 180
           GGRRKKGLKEKIKEKLPGHHDTAQQP ATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP
Sbjct: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP 172

Query: 181 GHN 183
           GHN
Sbjct: 181 GHN 172

[Close]

BLAST of Csor.00g023540 vs. ExPASy TrEMBL
Match: A0A6J1J0Z6 (dehydrin DHN1-like OS=Cucurbita maxima OX=3661 GN=LOC111481701 PE=3 SV=1)

HSP 1 Score: 334 bits (857), Expect = 1.38e-115
Identity = 168/183 (91.80%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDP 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFR+TDQYGNPVRRGGEYG+P
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEP 60

Query: 61  IGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGH 120
           IGTGGTYETGGHGGVGYGGGHQQQH           KEHGG+LRRSGSSSSSSSSEDDGH
Sbjct: 61  IGTGGTYETGGHGGVGYGGGHQQQH-----------KEHGGILRRSGSSSSSSSSEDDGH 120

Query: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP 180
           GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQ+EKKGIMDKIKEKLP
Sbjct: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLP 172

Query: 181 GHN 183
           GHN
Sbjct: 181 GHN 172

[Close]

BLAST of Csor.00g023540 vs. ExPASy TrEMBL
Match: A0A5D3CYN8 (Dehydrin DHN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005140 PE=3 SV=1)

HSP 1 Score: 246 bits (628), Expect = 1.27e-80
Identity = 137/191 (71.73%), Postives = 152/191 (79.58%), Query Frame = 0


Query: 1   MSHFQSG-TDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGE-YG 60
           M+H+QSG TDQYGNP+RQTDEYGNVI  TGQ+ DP  RTGEFRETDQYGNPVRR  + +G
Sbjct: 1   MAHYQSGGTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPVRRTDDVFG 60

Query: 61  DPIGTG------GTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSS 120
           +P+GTG      GTYET G+GG GYGGGH QQH           KEHGG+L RSGSSSSS
Sbjct: 61  NPVGTGTGMGTGGTYETSGYGGAGYGGGHHQQH-----------KEHGGILHRSGSSSSS 120

Query: 121 SSSEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIM 180
           SS EDDGHGGRRKKGLKEK+KEKLPG H    + QA STTTPGGY+S EHGGQHEKKGIM
Sbjct: 121 SS-EDDGHGGRRKKGLKEKVKEKLPGRHH--HEGQAVSTTTPGGYASAEHGGQHEKKGIM 177

Query: 181 DKIKEKLPGHN 183
           +KIKEKLPGH+
Sbjct: 181 EKIKEKLPGHH 177

[Close]

BLAST of Csor.00g023540 vs. ExPASy TrEMBL
Match: A0A1S3BTX2 (dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1)

HSP 1 Score: 246 bits (628), Expect = 1.27e-80
Identity = 137/191 (71.73%), Postives = 152/191 (79.58%), Query Frame = 0


Query: 1   MSHFQSG-TDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGE-YG 60
           M+H+QSG TDQYGNP+RQTDEYGNVI  TGQ+ DP  RTGEFRETDQYGNPVRR  + +G
Sbjct: 1   MAHYQSGGTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPVRRTDDVFG 60

Query: 61  DPIGTG------GTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSS 120
           +P+GTG      GTYET G+GG GYGGGH QQH           KEHGG+L RSGSSSSS
Sbjct: 61  NPVGTGTGMGTGGTYETSGYGGAGYGGGHHQQH-----------KEHGGILHRSGSSSSS 120

Query: 121 SSSEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIM 180
           SS EDDGHGGRRKKGLKEK+KEKLPG H    + QA STTTPGGY+S EHGGQHEKKGIM
Sbjct: 121 SS-EDDGHGGRRKKGLKEKVKEKLPGRHH--HEGQAVSTTTPGGYASAEHGGQHEKKGIM 177

Query: 181 DKIKEKLPGHN 183
           +KIKEKLPGH+
Sbjct: 181 EKIKEKLPGHH 177

[Close]

BLAST of Csor.00g023540 vs. ExPASy TrEMBL
Match: A0A0A0KWM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1)

HSP 1 Score: 244 bits (622), Expect = 1.04e-79
Identity = 136/191 (71.20%), Postives = 152/191 (79.58%), Query Frame = 0


Query: 1   MSHFQSG-TDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGE-YG 60
           M+H+QSG TDQYGNP+RQTDEYGNVI  TGQ+ DP  RTGEFRETDQYGNP RR  + +G
Sbjct: 1   MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 60

Query: 61  DPIGTG------GTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSS 120
           +P+GTG      GTYET G+GG GYGGGH QQH           KEHGG+L RSGSSSSS
Sbjct: 61  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQH-----------KEHGGILHRSGSSSSS 120

Query: 121 SSSEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIM 180
           SS EDDGHGGRRKKGLKEK+KEKLPGHH    + QA STTTPGGY+S E+GGQHEKKGIM
Sbjct: 121 SS-EDDGHGGRRKKGLKEKVKEKLPGHH--RHEEQAVSTTTPGGYTSAEYGGQHEKKGIM 177

Query: 181 DKIKEKLPGHN 183
           +KIKEKLPGH+
Sbjct: 181 EKIKEKLPGHH 177

[Close]

BLAST of Csor.00g023540 vs. TAIR 10
Match: AT5G66400.1 (Dehydrin family protein )

HSP 1 Score: 118.2 bits (295), Expect = 6.7e-27
Identity = 95/190 (50.00%), Postives = 110/190 (57.89%), Query Frame = 0


Query: 8   TDQYGNPVRQT-DEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDPIGTGGT 67
           TD+YGNP++Q  DEYGN + G G                 YG     G   G   GTGG 
Sbjct: 13  TDEYGNPIQQQYDEYGNPMGGGG-----------------YGTGGGGGATGGQGYGTGGQ 72

Query: 68  -YETGGH----GGVGYGGGHQQQHMGYGG-----GHQQQHKEH----GGVLRRSGSSSSS 127
            Y +GG     GG GYG G   +  G GG     G +Q HKE     GG+L RSG S SS
Sbjct: 73  GYGSGGQGYGTGGQGYGTGTGTEGFGTGGGARHHGQEQLHKESGGGLGGMLHRSG-SGSS 132

Query: 128 SSSEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQ-HEKKGI 182
           SSSEDDG GGRRKKG+ +KIKEKLPGHHD + Q QA       GY +  +GG+ HEKKG+
Sbjct: 133 SSSEDDGQGGRRKKGITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGM 183

[Close]

BLAST of Csor.00g023540 vs. TAIR 10
Match: AT5G66400.2 (Dehydrin family protein )

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-26
Identity = 94/190 (49.47%), Postives = 109/190 (57.37%), Query Frame = 0


Query: 8   TDQYGNPVRQT-DEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDPIGTGGT 67
           TD+YGNP++Q  DEYGN + G G                 YG     G   G   GTGG 
Sbjct: 13  TDEYGNPIQQQYDEYGNPMGGGG-----------------YGTGGGGGATGGQGYGTGGQ 72

Query: 68  -YETGGH----GGVGYGGGHQQQHMGYGG-----GHQQQHKEH----GGVLRRSGSSSSS 127
            Y +GG     GG GYG G   +  G GG     G +Q HKE     GG+L RSGS SSS
Sbjct: 73  GYGSGGQGYGTGGQGYGTGTGTEGFGTGGGARHHGQEQLHKESGGGLGGMLHRSGSGSSS 132

Query: 128 SSSEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQ-HEKKGI 182
           SS  DDG GGRRKKG+ +KIKEKLPGHHD + Q QA       GY +  +GG+ HEKKG+
Sbjct: 133 SS--DDGQGGRRKKGITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGM 182

[Close]

BLAST of Csor.00g023540 vs. TAIR 10
Match: AT3G50980.1 (dehydrin xero 1 )

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-16
Identity = 68/142 (47.89%), Postives = 78/142 (54.93%), Query Frame = 0


Query: 42  RETDQYGNPVRRGGEYGDPIGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGG 101
           ++ DQ+GNP         P  TG     GG   V  GGG                    G
Sbjct: 15  QQLDQFGNPF--------PATTGAYGTAGGAPAVAEGGG------------------LSG 74

Query: 102 VLRRSGSSSSSSSSEDDGHGGRR--KKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSS 161
           +L RSG SSSSSSSEDDG GGRR  KKG+ EKIKEKLPGHHD+ +     STTT     +
Sbjct: 75  MLHRSG-SSSSSSSEDDGLGGRRRKKKGITEKIKEKLPGHHDSNKTSSLGSTTTAYDTGT 125

Query: 162 VEHGGQHEKKGIMDKIKEKLPG 182
           V     HEKKG+M+KIKEKLPG
Sbjct: 135 V----HHEKKGMMEKIKEKLPG 125

[Close]

BLAST of Csor.00g023540 vs. TAIR 10
Match: AT2G21490.1 (dehydrin LEA )

HSP 1 Score: 82.0 bits (201), Expect = 5.4e-16
Identity = 73/181 (40.33%), Postives = 91/181 (50.28%), Query Frame = 0


Query: 9   DQYGNPVRQTDEYGN-VIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDPIGTGGTY 68
           D+ GNP+  TD  GN ++  T +H +P + TG    T Q+                G T+
Sbjct: 6   DEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDIAEHPTSTVGETH 65

Query: 69  ETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGV----LRRSGSSSSSSSSEDDGHGGR 128
                 G G         +  G G     ++H G     LRRSG SSSSSSSEDDG GGR
Sbjct: 66  PAAAPAGAGAATAATATGVSAGTGATTTGQQHHGSLEEHLRRSG-SSSSSSSEDDGQGGR 125

Query: 129 RKKGLKEKIKEKL-PGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGH 184
           RKK +KEKIKEK   G H   Q P   +TT P           HEKKGI++KIK+KLPGH
Sbjct: 126 RKKSIKEKIKEKFGSGKHKDEQTPATATTTGPATTDQ-----PHEKKGILEKIKDKLPGH 180

[Close]

BLAST of Csor.00g023540 vs. TAIR 10
Match: AT1G20440.1 (cold-regulated 47 )

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-12
Identity = 50/95 (52.63%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 103 LRRSGSSSSSSSSEDDG----------HGGRRKKGLKEKIKEKLPGHHD-TAQQ--PQAT 162
           L RS SSSSSSS E+             G   KKGL EKIKEKLPGHHD TA+   P +T
Sbjct: 104 LHRSNSSSSSSSDEEGEEKKEKKKKIVEGEEDKKGLVEKIKEKLPGHHDKTAEDDVPVST 163

Query: 163 STTTPGGYSSVEHG-GQHEKKGIMDKIKEKLPGHN 184
           +   P   S VEH   + EKKG+++KIKEKLPGH+
Sbjct: 164 TIPVPVSESVVEHDHPEEEKKGLVEKIKEKLPGHH 198

The following BLAST results are available for this feature:

BLAST of Csor.00g023540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30185	9.5e-26	50.00	Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1	[more]
Q2R4Z7	2.4e-21	51.57	Dehydrin Rab16C OS=Oryza sativa subsp. japonica OX=39947 GN=RAB16C PE=2 SV=1	[more]
A2ZDX6	4.1e-21	51.57	Dehydrin Rab16C OS=Oryza sativa subsp. indica OX=39946 GN=RAB16C PE=2 SV=1	[more]
A8CVF3	5.4e-21	47.74	Dehydrin DHN1 OS=Avicennia marina OX=82927 GN=DHN1 PE=1 SV=1	[more]
A2ZDX8	9.2e-21	50.31	Dehydrin Rab16B OS=Oryza sativa subsp. indica OX=39946 GN=RAB16B PE=2 SV=2	[more]

BLAST of Csor.00g023540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600589.1	3.93e-129	100.00	Dehydrin Xero 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031229.1 D...	[more]
XP_022942609.1	2.01e-115	92.90	dehydrin Rab16B-like [Cucurbita moschata]	[more]
XP_022983036.1	2.85e-115	91.80	dehydrin DHN1-like [Cucurbita maxima]	[more]
XP_023550338.1	3.55e-112	90.32	dehydrin Rab18-like [Cucurbita pepo subsp. pepo]	[more]
XP_038902571.1	7.89e-83	73.66	dehydrin Xero 1-like [Benincasa hispida]	[more]

BLAST of Csor.00g023540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRT8	9.71e-116	92.90	dehydrin Rab16B-like OS=Cucurbita moschata OX=3662 GN=LOC111447593 PE=3 SV=1	[more]
A0A6J1J0Z6	1.38e-115	91.80	dehydrin DHN1-like OS=Cucurbita maxima OX=3661 GN=LOC111481701 PE=3 SV=1	[more]
A0A5D3CYN8	1.27e-80	71.73	Dehydrin DHN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005140 ...	[more]
A0A1S3BTX2	1.27e-80	71.73	dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1	[more]
A0A0A0KWM9	1.04e-79	71.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1	[more]

BLAST of Csor.00g023540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66400.1	6.7e-27	50.00	Dehydrin family protein	[more]
AT5G66400.2	3.3e-26	49.47	Dehydrin family protein	[more]
AT3G50980.1	1.8e-16	47.89	dehydrin xero 1	[more]
AT2G21490.1	5.4e-16	40.33	dehydrin LEA	[more]
AT1G20440.1	4.7e-12	52.63	cold-regulated 47	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000167	Dehydrin	PFAM	PF00257	Dehydrin	coord: 8..182 e-value: 3.0E-39 score: 135.1
IPR000167	Dehydrin	PANTHER	PTHR33346	DEHYDRIN XERO 2-RELATED	coord: 37..182 coord: 6..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..159
None	No IPR available	PANTHER	PTHR33346:SF29	DEHYDRIN RAB18	coord: 6..31
None	No IPR available	PANTHER	PTHR33346:SF29	DEHYDRIN RAB18	coord: 37..182
IPR030513	Dehydrin, conserved site	PROSITE	PS00823	DEHYDRIN_2	coord: 131..138
IPR030513	Dehydrin, conserved site	PROSITE	PS00823	DEHYDRIN_2	coord: 174..181
IPR030513	Dehydrin, conserved site	PROSITE	PS00315	DEHYDRIN_1	coord: 111..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g023540.m01	Csor.00g023540.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009631	cold acclimation
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0009415	response to water
cellular_component	GO:0005829	cytosol