Csor.00g023450 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g023450
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D2
LocationCsor_Chr04: 3887311 .. 3889954 (-)
RNA-Seq ExpressionCsor.00g023450
SyntenyCsor.00g023450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAAACCGCGCCCTCGCCCTCGCCCTCTCCCCCTCCTTCTCCGATCTTCTTCGTTATTCATCGCCACTTCGCCGCCGACCTCGCCCTCGCCTTCTCCTTTGGTCTTCTCCGGCTCTGGTCAGCTCTCTCTCTCTCTCTCTCTCTCTGATAAATTCTTCTCTATCTTTCCATTTCTCTCCTCCCTCTGTTCTCATCTCTCAATCTCACTCTCAGTTTTGGTTTTATATTCGGTCTTTCTTTCTCTTTTCTTTTAGTTGCATTGTTTCGTCCTTCCTGTTGTTTTTTTCGTGCAGTTTCCCTAGTAGTGTGTTCTTAAACTATTGCATCTGACTGAGGAATTATTACTTGAATGTTTTATGATGAGTACATGTAATATCTTGTTTGCCTCTTAGGATGAAAATAGTTCAATTTTTCATTTCCTGAGTTTATCAATGCTCAACAAGCACTGGAGACCTTGAGTCAAGGGTTAATATTCTCATTCTGTGTTTTCTCGAACAATTTAAGCCTCGACTATAGTCTCTCTGGAACATGATGTTCTTTAGGGCAGCTTTAGGCACATTCTGTTTTATGAGATTATGCTGATACGGTTGTATGTGCTTATGGTCATATGTTTTCCTGTGTTTTCAGACTCATTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGGTATTTTGTTCTTTGGTATTTGCATATTTGTTTATGCGACATCTTAGTCTTCCATTTGTTAATTCTAACATACTAATGCCTTTCATATCCTCCCTCTTTTGTCTTCAATTTCAGCCGACCAATGGAGGAAGATGTAAGTTTCTTCAGTCTTTTGTGCTTTCGCTTTCAGTACTTTTATCCAATACATGTTGCCAAATGGTTCGACCTTTTTCTTATGCGCAAGTATGTTTGAATCATGTCTTACTCTTGAGTCGTTATAAAAGCTTTTCATTGTATAGTATCTTCGGCTCCTGTTCCTTTTCATTGACACAACTCTTTTGAGTTGGATGAAAATTTTATCCTTTGTACTGAAAAATTATGATTTCTCTTTCTAATAATCATGATCCTGTAGGCCAGTTAGTACTTACCTCTGCTAATGCCCTTGAGGCAACTATTGAACTCTCTTTAAATTTATTAAAATTGGATAACATTTTAGCATGGTATTTTTTTTTGTCTTTAGTTAAAGGTCAGCTTTATGTCAATTTTTAATTTTACTAAATTCTGCTGATTGAATGATATTTTGATATATTGGGAGTTCGATGCTTGAAAACTCGATATATAATTAAGGTTTGGAAGTTATGATTTTTAGTTATCTATGTCAGAAACCCTGTGAAAAGTTCACATGGCTTTTGTTGTTTAGACTAGGAAGGTTGGATATTTGTAATAACTTAAAAAAAAGGAAAAGATCTCATTTTCTATGCCCCTTGGTATTATGTGAATAATGTTGTATTCTTGAGTCATTTATTTCTCCATCCCGAGTTTGCTGATGCGCTTTAGTTTTGGTTTAGTGTACACTATCTTGAATTTCTCTAGTAGAGAAATTCCTTGACAGTTGGTCTTCAAAACGGGTTTTTATTTTTTACTTACTATGTTGGAAATTCCTTGGTAGTAGGTCTTTAAAATGGCGTTTTATTTTTTTTACTTCTTTTGGGTGCTATAGTTTGGCTGGCAAGAAACTGTATGATTTTTTAAGACGTGTTTTTATACCTTTTGGAGTAAAACTGATGATCTTTAGATTCAGTGCCGTTTTTTCTTTCAACATTGTTTCTATGGTTGATTATTGTGGTATTTTTCCCTTCCCATTTGATGATTGTTACCAAGTTACTCTTTCGTAAGCTATTTATAAAATGGCTTTATTTATAATTTTTTAAAAGTGATAACTACGACAATTTCATGAAGCTCATTTCTTTCAAGGAACCTTTTTTTTTAAATCTTTCCAGGCCCCCTTCCCTGTTGTTCCTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGTTGGTGTTATACTGCAAGATCTTTGGACTTCTTCAATTTTGTTCTGTTTATTACTTGAAACTTTACTGAAGTGCTACTAGAACGTCATTAGGAAGTACTTACTTCGAATCCTTTGCAGACTAACAAGAATGAAGAAGAGGAATTTAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTATGCTTTGTTTGTGTGTGTTAAAGAGTTGTGCCTTGTAATTCGCAGGTGAACTGTTTAGGTAAAAACCCTCATGTTTTGGACCCCCTCGACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTTTTCTTGATGTGTGCTTACTTTTTTCCTTGCTTTGTATTGTAGACTCGTGAGTTACGTGTCATGTATAATTACAATGTCTAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCCAAGTAA

mRNA sequence

ATGCACAAAACCGCGCCCTCGCCCTCGCCCTCTCCCCCTCCTTCTCCGATCTTCTTCGTTATTCATCGCCACTTCGCCGCCGACCTCGCCCTCGCCTTCTCCTTTGGTCTTCTCCGGCTCTGCTTTAGGCACATTCTGTTTTATGAGATTATGCTGATACGGTTGTATGTGCTTATGGTCATATGTTTTCCTGTGTTTTCAGACTCATTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGCCGACCAATGGAGGAAGATACTAACAAGAATGAAGAAGAGGAATTTAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCCAAGTAA

Coding sequence (CDS)

ATGCACAAAACCGCGCCCTCGCCCTCGCCCTCTCCCCCTCCTTCTCCGATCTTCTTCGTTATTCATCGCCACTTCGCCGCCGACCTCGCCCTCGCCTTCTCCTTTGGTCTTCTCCGGCTCTGCTTTAGGCACATTCTGTTTTATGAGATTATGCTGATACGGTTGTATGTGCTTATGGTCATATGTTTTCCTGTGTTTTCAGACTCATTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGCCGACCAATGGAGGAAGATACTAACAAGAATGAAGAAGAGGAATTTAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCCAAGTAA

Protein sequence

MHKTAPSPSPSPPPSPIFFVIHRHFAADLALAFSFGLLRLCFRHILFYEIMLIRLYVLMVICFPVFSDSFQGHWRRSTSSYKMSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK
Homology
[Close]
BLAST of Csor.00g023450 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.2e-45
Identity = 86/100 (86.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 89  EDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 148
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 149 WTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP 189
           WTEVPK+GKGKKK++P+NKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Csor.00g023450 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.2e-45
Identity = 86/100 (86.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 89  EDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 148
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 149 WTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP 189
           WTEVPK+GKGKKK++P+NKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Csor.00g023450 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.2e-45
Identity = 86/100 (86.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 89  EDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 148
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 149 WTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP 189
           WTEVPK+GKGKKK++P+NKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Csor.00g023450 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-44
Identity = 85/100 (85.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 89  EDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 148
           E+  + EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 13  EELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 72

Query: 149 WTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP 189
           WTE+P+TGKGKKK +P+NKDRFISKMFLRGDSVI+VLRNP
Sbjct: 73  WTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

[Close]
BLAST of Csor.00g023450 vs. ExPASy Swiss-Prot
Match: Q18786 (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239 GN=snr-4 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-40
Identity = 82/112 (73.21%), Postives = 93/112 (83.04%), Query Frame = 0 

Query: 77  STSSYKMSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDR 136
           S  +   S    E+    E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDR
Sbjct: 2   SAQAKPRSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDR 61

Query: 137 HCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP 189
           HCNMVLENV+EMWTEVPKTGKGKKKA+ + KDRFISKMFLRGDSVI+V++NP
Sbjct: 62  HCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113

[Close]
BLAST of Csor.00g023450 vs. NCBI nr
Match: KAG6600580.1 (putative small nuclear ribonucleoprotein Sm D2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 375 bits (962), Expect = 6.47e-131
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0 

Query: 1   MHKTAPSPSPSPPPSPIFFVIHRHFAADLALAFSFGLLRLCFRHILFYEIMLIRLYVLMV 60
           MHKTAPSPSPSPPPSPIFFVIHRHFAADLALAFSFGLLRLCFRHILFYEIMLIRLYVLMV
Sbjct: 1   MHKTAPSPSPSPPPSPIFFVIHRHFAADLALAFSFGLLRLCFRHILFYEIMLIRLYVLMV 60

Query: 61  ICFPVFSDSFQGHWRRSTSSYKMSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLIN 120
           ICFPVFSDSFQGHWRRSTSSYKMSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLIN
Sbjct: 61  ICFPVFSDSFQGHWRRSTSSYKMSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLIN 120

Query: 121 CRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDS 180
           CRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDS
Sbjct: 121 CRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDS 180

Query: 181 VIIVLRNPK 189
           VIIVLRNPK
Sbjct: 181 VIIVLRNPK 189

[Close]
BLAST of Csor.00g023450 vs. NCBI nr
Match: KAA0044802.1 (small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa] >TYK16662.1 small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa])

HSP 1 Score: 227 bits (579), Expect = 2.20e-73
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0 

Query: 68  DSFQGHWRRSTSSYKMSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKL 127
            S QGH   STSSY MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKL
Sbjct: 12  SSLQGHCPGSTSSYDMSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKL 71

Query: 128 LGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRN 187
           LGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRN
Sbjct: 72  LGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRN 131

Query: 188 PK 189
           PK
Sbjct: 132 PK 133

[Close]
BLAST of Csor.00g023450 vs. NCBI nr
Match: KAG6577216.1 (U-box domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234 bits (598), Expect = 1.87e-68
Identity = 118/123 (95.93%), Postives = 120/123 (97.56%), Query Frame = 0 

Query: 67  SDSFQGHWRRSTSSYKMSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKK 126
           S S QGH RRSTSSYKMSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKK
Sbjct: 788 SASRQGHCRRSTSSYKMSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKK 847

Query: 127 LLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLR 186
           LLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLR
Sbjct: 848 LLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLR 907

Query: 187 NPK 189
           NPK
Sbjct: 908 NPK 910

[Close]
BLAST of Csor.00g023450 vs. NCBI nr
Match: XP_022942850.1 (small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_023523856.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213 bits (543), Expect = 2.84e-68
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 83  MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 142
           MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 143 ENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Csor.00g023450 vs. NCBI nr
Match: XP_022983472.1 (small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima])

HSP 1 Score: 213 bits (542), Expect = 4.04e-68
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 83  MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 142
           MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 143 ENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Csor.00g023450 vs. ExPASy TrEMBL
Match: A0A5A7TNA0 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004930 PE=3 SV=1)

HSP 1 Score: 227 bits (579), Expect = 1.06e-73
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0 

Query: 68  DSFQGHWRRSTSSYKMSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKL 127
            S QGH   STSSY MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKL
Sbjct: 12  SSLQGHCPGSTSSYDMSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKL 71

Query: 128 LGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRN 187
           LGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRN
Sbjct: 72  LGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRN 131

Query: 188 PK 189
           PK
Sbjct: 132 PK 133

[Close]
BLAST of Csor.00g023450 vs. ExPASy TrEMBL
Match: A0A0A0KUK4 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis sativus OX=3659 GN=Csa_4G046730 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 1.89e-72
Identity = 113/121 (93.39%), Postives = 116/121 (95.87%), Query Frame = 0 

Query: 69  SFQGHWRRSTSSYKMSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLL 128
           S QGH   STS+Y MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLL
Sbjct: 68  SLQGHCPGSTSTYNMSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLL 127

Query: 129 GRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP 188
           GRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNP
Sbjct: 128 GRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 187

[Close]
BLAST of Csor.00g023450 vs. ExPASy TrEMBL
Match: A0A6J1FX13 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita moschata OX=3662 GN=LOC111447757 PE=3 SV=1)

HSP 1 Score: 213 bits (543), Expect = 1.38e-68
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 83  MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 142
           MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 143 ENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Csor.00g023450 vs. ExPASy TrEMBL
Match: A0A6J1IZE4 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC111482063 PE=3 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.95e-68
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 83  MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 142
           MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 143 ENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Csor.00g023450 vs. ExPASy TrEMBL
Match: A0A1S3BTT5 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE=3 SV=1)

HSP 1 Score: 211 bits (537), Expect = 1.13e-67
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 83  MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 142
           MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 143 ENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Csor.00g023450 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 204.1 bits (518), Expect = 9.7e-53
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 83  MSRPMEEDTN-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 142
           MS+PMEEDTN K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 60

Query: 143 LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 190
           LENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of Csor.00g023450 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 204.1 bits (518), Expect = 9.7e-53
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 83  MSRPMEEDTN-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 142
           MS+PMEEDTN K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 60

Query: 143 LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 190
           LENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of Csor.00g023450 vs. TAIR 10
Match: AT3G62840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 204.1 bits (518), Expect = 9.7e-53
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 83  MSRPMEEDTN-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 142
           MS+PMEEDTN K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 60

Query: 143 LENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 190
           LENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of Csor.00g023450 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-52
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0 

Query: 83  MSRPMEEDTN--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 142
           MS+PMEEDTN  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNM
Sbjct: 1   MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60

Query: 143 VLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 190
           VLENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]
BLAST of Csor.00g023450 vs. TAIR 10
Match: AT2G47640.4 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-52
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0 

Query: 83  MSRPMEEDTN--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 142
           MS+PMEEDTN  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNM
Sbjct: 1   MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60

Query: 143 VLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 190
           VLENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

The following BLAST results are available for this feature:
BLAST of Csor.00g023450 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3SZF83.2e-4586.00Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1[more]
P623163.2e-4586.00Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=... [more]
P623173.2e-4586.00Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV... [more]
Q9VI101.6e-4485.00Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=722... [more]
Q187861.1e-4073.21Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239... [more]
BLAST of Csor.00g023450 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600580.16.47e-131100.00putative small nuclear ribonucleoprotein Sm D2, partial [Cucurbita argyrosperma ... [more]
KAA0044802.12.20e-7393.44small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa] >TYK16662.... [more]
KAG6577216.11.87e-6895.93U-box domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022942850.12.84e-68100.00small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_023523856.1 ... [more]
XP_022983472.14.04e-6899.07small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima][more]
BLAST of Csor.00g023450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TNA01.06e-7393.44Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A0A0KUK41.89e-7293.39Small nuclear ribonucleoprotein Sm D2 OS=Cucumis sativus OX=3659 GN=Csa_4G046730... [more]
A0A6J1FX131.38e-68100.00Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita moschata OX=3662 GN=LOC111447... [more]
A0A6J1IZE41.95e-6899.07Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC11148206... [more]
A0A1S3BTT51.13e-6798.13Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE... [more]
BLAST of Csor.00g023450 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G47640.29.7e-5393.52Small nuclear ribonucleoprotein family protein [more]
AT2G47640.39.7e-5393.52Small nuclear ribonucleoprotein family protein [more]
AT3G62840.29.7e-5393.52Small nuclear ribonucleoprotein family protein [more]
AT2G47640.11.3e-5292.66Small nuclear ribonucleoprotein family protein [more]
AT2G47640.41.3e-5292.66Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 107..186
e-value: 5.9E-20
score: 82.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 110..184
e-value: 2.8E-18
score: 65.3
NoneNo IPR availableGENE3D2.30.30.100coord: 97..189
e-value: 1.2E-40
score: 139.1
NoneNo IPR availablePANTHERPTHR12777:SF6SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 83..189
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 83..189
IPR027248Small nuclear ribonucleoprotein Sm D2CDDcd01720Sm_D2coord: 99..188
e-value: 1.3778E-63
score: 189.079
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 102..187

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g023450.m01Csor.00g023450.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0008380 RNA splicing
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0030532 small nuclear ribonucleoprotein complex