Csor.00g019750 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g019750
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Polyadenylate-binding protein 1-like
Location	Csor_Chr04: 1902771 .. 1906678 (-)
RNA-Seq Expression	Csor.00g019750
Synteny	Csor.00g019750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCATAATTTCAACTACGACGAGCACGAGCATGAACACGAAGTCTATGGCGGCGATATTCCCGACGATGCCGAGATGGATGCTGACCTCGATATGTCCTCTGGTAGGGCTGACGAAGAAGGCTACGACGATGCCGAGCCTACTAACTCCAACTCGAAGGTAGCTTCTCGAGTTCTTCTCTGTTTTTTCCGAGCCTTTTTCATGGAGTTTCGTCTCTGATTCACTGTATTTTCGAACTGTTCAGGACTTGGAGGACATGAAGAGGAGGCTTAAAGAGATCGAGGAGGAGGCCGGTGCTCTTCGGGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGGTATCTTCCTTTCTTATCTCTGTACTTCAGTAAGTTAGTTCTTGATTTCTTTTATTGATCTTGGCTTGGTTTAAGGCTTAATTTTTACCGATTTTTAATGGCGGTGGGAGGATTTAAGTTGCCTGGATGAGCCTAGTCTTAACATTGATCACATGTTTGCACATTGAAGAGAGTGAATTTAAGTTGCAAACTGTGAATCAAGTTCATGAAGTTCCAAGATCTGTTAGGGCTAAACCTTATTGAAGTGATTTAGTGGGTAAGTAGGAGAGTTTTGTGACAACACAAGGTTGTCGGATCGTATAAATAGAAGGCTTCTTAAATTGGTTGAGAGCCCTTGTGGGAAGTATGGTCTAGATGAGGTTAAATGCCTAACTTACCAAAGAGTTTTATACTAAACTAACCGAAGAGTTTTATAAACGTCGTCACTTTTTATAAACAGTCGAAGTCCCGTTAGTTTTTGACAAACATCTTCAAAGTTCGGTTTCTCGGGAAGAGAAAAGAAAAGATCGTTAGATCTAGGAAATTTTGAAGTTCTTGAAGTGTTATTTAGCATTGTTATGTCCAATGGGTGCATAGCATTCTTCGATTTTTCTTTGTAGTCTCGAGTTTTTTTGTCGTTTATTTTATAAATCAACCAGCAAGTTTTCAAGACTTTCTGTATTTTGATGGTATTTGACAAATTTCTTATAACGTTCGACTTTCATCCGGGTGGAACTAAAGTTAAGTTGTCTCTCTTTTCTTATTTATGCTATTTGAGTCTGGAACTTCTTTTTTTCACAATTATGTTGCTTTAATTGTCATATTTGGGCAATAATTTTCACTTTATTAACAAAACAAATTGATTGTTTTAATGTCCTCTTATTTCCTATGCTGTCAAAACGATACGAACTTTTAGCAAGATGAATGTGTTCTATGTGGCATGTGCATGTCTGCTCATTAGATACTCTATAGGATTGTTCTCAGATTATTACTACTTTTCTTGTTATCATTTTTCTTCTTTTTGGTGGTTGGAAGTATATTAATCAGTGGAAGTTTTATCTCATACTTTGGTTAACAATCTTTTTAGGGTTTTTCATTTGTTTGTAACTAACTCGTGTTCCTTTTAACATGTAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATGCTCGATCGGTATACGTTGGTAATGTGAGATTTATCACCCTTTTCATTCACTATGTCATTTTAACATTGAAGTTTTTTCCGTACACATTTATAGTATTACATCTTTAGCATTGGTCACCTTTTCGTTTCTCTTTAGTCATCTAACAACCATGGATTGGTCTTTACTGTTTATATTCGAATTATCTCAAGTACCGGAATAAAAATATTGAAAAACTTTTTTTTTTTTTTTAAATCTTTTACTTTGAGTGACATTCTTTCATTAAAGAGTAAATTCAGACAAGAAATGTAAAAGATAAAACAATTATCATTAGGGAATACTGCGCCACGAATTATATTATTTTAAACTTGAAAAAATTAACTCGTATTTTTTTCAGTTTTTCTTTGTGGAAAATTGTTAAGCTGTTGCCACAACTAATAAAACAGAAAGTGCACGTCGAGAAGACCCATGGAACTTAGCTAAATCTAGTACCTGTTCCCGGCCATGCTCTTCCCATTGAAAAGGATTTCTTTATAGCTGTAGCCCCCAATCATATGTCTTTGCTGTGTGGATCCATAAGGTTTTAGCGTTTTCGTAAAGTCGATGCCCATGTGAACAACTAGTTTATATTATATTCGGGCTAGCTGCGTCAGCAAGTTCTTCATAGAGTTGGAATGAAGGAAAGATCAAATTCCGCAAATGTTTGGTATCAGAGTGTGAGAATAAATGGTCTCGGTCCTGCTCTGCTTTCATACAGAGCAAACAACAGCTAGGATTTTATTAGGACATCTCTTTTGCAATCTATTCCCTCTGTTGACGCTCTCTCGGGAAAGGGACCTAAGAATTGCTATTGCTCCTTCCTTGACTGCCTTGCTTTTATCTAGTAATGAAGTTCCAAAAAACTTATTAATTTCTAACTTATCCTGGTTTCTTCTTGTTACTACCCTTCTTGAATTGGTGCTGCTGTCATTCCGAGCTTCTTGCACTTGCTAGTTCTTTTCCCTGTATAACCTCTTATAATCTCGAAAGCCTTAAACAATAATGTTGATTTTCCCCTCACGTATCCTGCCAAAAGGAGAGCCAATGCGCCCACCGAAGGCTACACACACTTCGAATCTTCCTTTCTTCTAAACCCCCATTCCTTCATTTTTCATATATGCTTGCCACGACCACCACCTTATCCCATAGGGCGCTAGACTCTTTCGGAAATCTCAATAACCTCTTATCCATAGTGCCCATATGCTGATGCTTAGCCCAACCTTTTAATGTTGCAATTATTGACCATAAAGACGTAAACCCAATCAGTATAGGGGAAAGAATTCATCGGCATGATCAATCTCAAGAAGTGATCAAAATTTTGGACCTTCGTAGAATGTTACCTTTCTGATTGTATGTTCAATTTATGTGAAGTTTATATTGAATATATGTCAAGTCATTATCATCTGTTACGAGGAATTATATTTTATCAATATTTCTAATATTTGGGTCTAAAGATATCTTTCCTTTAACTTGCTCCTAATCTTAAAAGTCTTGATGGATGGCGGATTGAAGTGTTATTTCTCCTTGGGCATACTTTTCTTTTTTGCCTCTCTCCCTATTTCACAAGGCTTTCCAATGTCATATTTCAATACAAGATTTATTTTTTTGTGTTGTGGTTTTTACTTCAGGTTGACTATGCATGCACTCCTGAAGAGGTGCAACAGCATTTTCAATCATGTGGAACAGTGAACAGAGTCACGATTTTGACTGACAAATTCGGTCACCCCAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGATGCTGTACAGAACGCTTTGCTGTTGAATGAGTCAGAGTTGCATGGTCGCCAACTAAAGGTATTTTAAACTTCAGTTTATGTAAGAACTTTATGTTAATAATCTATTTCACCCATACGCCCCTAATAGCGAATGTATATCGGAGCGGAGAACGACGTTGTCAATTTTTGAACTTCACCAGGCTTGTACGCTCATCTTAGATAAATTATAGAGTTTTACTACTGACCATAGTCGATTTTTGGTACATTTTGCAGGTCTCCGCCAAGAGGACAAATGTCCCTGGCATGAAGCAATACCGAGGAAGGCGACCGAACCCTTATGGCTTTCGAGGTCGCCGCCCTTTCATGGCAGATGCCCCTTTTTATCCTTCGTATGGTTATGGGTAAGTGCTGAAATACTATATTTCTTTTCACAAGATGTGTGGATGGTTCATTTTCATTTTCAGACACAAACATTAAGTGTACTCCTTCAGAATTATCAACTTCCTATGTATATTGTTGAAAAAGGGAATAATCAACTTCCTTCTACTTTCAGCTTTATAATGCAAGTTTCTATCTTCCTACTTTATGCAGAAGGGTTCCGAGGTTCAGGCGGCCGATGCGGTACAGACCATACTAG

mRNA sequence

ATGGAGCATAATTTCAACTACGACGAGCACGAGCATGAACACGAAGTCTATGGCGGCGATATTCCCGACGATGCCGAGATGGATGCTGACCTCGATATGTCCTCTGGTAGGGCTGACGAAGAAGGCTACGACGATGCCGAGCCTACTAACTCCAACTCGAAGGACTTGGAGGACATGAAGAGGAGGCTTAAAGAGATCGAGGAGGAGGCCGGTGCTCTTCGGGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATGCTCGATCGGTATACGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTGCAACAGCATTTTCAATCATGTGGAACAGTGAACAGAGTCACGATTTTGACTGACAAATTCGGTCACCCCAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGATGCTGTACAGAACGCTTTGCTGTTGAATGAGTCAGAGTTGCATGGTCGCCAACTAAAGGTCTCCGCCAAGAGGACAAATGTCCCTGGCATGAAGCAATACCGAGGAAGGCGACCGAACCCTTATGGCTTTCGAGGTCGCCGCCCTTTCATGGCAGATGCCCCTTTTTATCCTTCGTATGGTTATGGAAGGGTTCCGAGGTTCAGGCGGCCGATGCGGTACAGACCATACTAG

Coding sequence (CDS)

ATGGAGCATAATTTCAACTACGACGAGCACGAGCATGAACACGAAGTCTATGGCGGCGATATTCCCGACGATGCCGAGATGGATGCTGACCTCGATATGTCCTCTGGTAGGGCTGACGAAGAAGGCTACGACGATGCCGAGCCTACTAACTCCAACTCGAAGGACTTGGAGGACATGAAGAGGAGGCTTAAAGAGATCGAGGAGGAGGCCGGTGCTCTTCGGGAAATGCAGGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATGCTCGATCGGTATACGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTGCAACAGCATTTTCAATCATGTGGAACAGTGAACAGAGTCACGATTTTGACTGACAAATTCGGTCACCCCAAAGGATTTGCTTATGTTGAGTTTGTGGAAGTTGATGCTGTACAGAACGCTTTGCTGTTGAATGAGTCAGAGTTGCATGGTCGCCAACTAAAGGTCTCCGCCAAGAGGACAAATGTCCCTGGCATGAAGCAATACCGAGGAAGGCGACCGAACCCTTATGGCTTTCGAGGTCGCCGCCCTTTCATGGCAGATGCCCCTTTTTATCCTTCGTATGGTTATGGAAGGGTTCCGAGGTTCAGGCGGCCGATGCGGTACAGACCATACTAG

Protein sequence

MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY

Homology

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BLAST of Csor.00g019750 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.5e-81
Identity = 164/227 (72.25%), Postives = 184/227 (81.06%), Query Frame = 0


Query: 11  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGY---DDAEPTNSNSKDLEDMKRRLKEIE 70
           E EHEVYGG+IP++ E + D +       EEG    D+     S+S+DLEDMK+R+KEIE
Sbjct: 6   EQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEIE 65

Query: 71  EEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQ 130
           EEAGALREMQAK EK+MGA QD S    + AEKEEVD+RS+YVGNVDYACTPEEVQQHFQ
Sbjct: 66  EEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQ 125

Query: 131 SCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGM 190
           SCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTNVPGM
Sbjct: 126 SCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGM 185

Query: 191 KQYRGR-RPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 234
           +Q+RGR RP    FR  R FM   PFYP Y YGRVPRFRRPMRYRPY
Sbjct: 186 RQFRGRGRP----FRPMRGFMPGVPFYPPYAYGRVPRFRRPMRYRPY 227

[Close]

BLAST of Csor.00g019750 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-77
Identity = 160/224 (71.43%), Postives = 182/224 (81.25%), Query Frame = 0


Query: 11  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEA 70
           E EHEVYGG+IPD  EMD D++  +   D    DD        K+L++MK+RLKE+E+EA
Sbjct: 3   EEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADD-----DAVKELDEMKKRLKEMEDEA 62

Query: 71  GALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCG 130
            ALREMQAKVEKEMGA QD +S +A QA KEEVDARSV+VGNVDYACTPEEVQQHFQ+CG
Sbjct: 63  AALREMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCG 122

Query: 131 TVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQY 190
           TV+RVTILTDKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKV  KRTNVPG+KQ+
Sbjct: 123 TVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQF 182

Query: 191 RGRRPNPY-GFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 234
           RGRR NPY G+R RRPFM+   + P YGYG+ PRFRRPMRY PY
Sbjct: 183 RGRRFNPYMGYRFRRPFMSPYMYSP-YGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of Csor.00g019750 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.4e-74
Identity = 159/227 (70.04%), Postives = 175/227 (77.09%), Query Frame = 0


Query: 11  EHEHEVYGGDIPDDAEMDA---DLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIE 70
           E EHEVYGG+IP+  + D    D+DMS+  ADE+             +L +MKRRLKE+E
Sbjct: 3   EEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAV----------TELAEMKRRLKEME 62

Query: 71  EEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQ 130
           EEA ALREMQAKVEKEMGA QD +S +A Q  KEEVDARSVYVGNVDYACTPEEVQ HFQ
Sbjct: 63  EEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQ 122

Query: 131 SCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGM 190
           +CGTVNRVTIL DKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKVS KRTNVPGM
Sbjct: 123 TCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM 182

Query: 191 KQYRGRRPNP-YGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 234
           KQY   R NP  G+R RRPF+    FY  YGYG+ PRFRRPMRY PY
Sbjct: 183 KQYHPGRFNPSMGYRFRRPFVPPY-FYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of Csor.00g019750 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.8e-37
Identity = 91/173 (52.60%), Postives = 113/173 (65.32%), Query Frame = 0


Query: 45  DAEPTNSNSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVD 104
           D +  ++  K+L +MK R+ E+E EA  LR MQ +++ E         T A + +KE +D
Sbjct: 3   DQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALRNDKESID 62

Query: 105 ARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEVDAVQNAL 164
           A+SVYVGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V NAL
Sbjct: 63  AQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 122

Query: 165 LLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSY 217
           LLN S LH R LKV+ KRTNVPGM + RGR       RGR  +   A  +  Y
Sbjct: 123 LLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166

[Close]

BLAST of Csor.00g019750 vs. ExPASy Swiss-Prot
Match: Q28ZX3 (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.8e-30
Identity = 77/169 (45.56%), Postives = 110/169 (65.09%), Query Frame = 0


Query: 39  DEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEAGALREMQAKVEKEM--GAVQDSSSTSAT 98
           +EEG    +P      +LE +K R+KE+EEEA  +++MQ++V+K+M  G+    ++   +
Sbjct: 33  EEEGSMQIDP------ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLS 92

Query: 99  QAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVE 158
             EK+E+D RSVYVGNVDY  + EE++ HF  CGT+NRVTIL +K  GHPKGFAY+EF  
Sbjct: 93  LEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGS 152

Query: 159 VDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPNPYGFRGRR 205
            + V+ AL +NE+   GRQ+KV +KRTN PG+          +  RG R
Sbjct: 153 KEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195

[Close]

BLAST of Csor.00g019750 vs. NCBI nr
Match: KAG6600212.1 (Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 458 bits (1179), Expect = 1.54e-162
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60
           MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK
Sbjct: 1   MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60

Query: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPE 120
           RRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPE
Sbjct: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPE 120

Query: 121 EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAK 180
           EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAK
Sbjct: 121 EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAK 180

Query: 181 RTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233
           RTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 RTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233

[Close]

BLAST of Csor.00g019750 vs. NCBI nr
Match: XP_023516168.1 (polyadenylate-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457 bits (1176), Expect = 4.42e-162
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60
           MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTN+NSKDLEDMK
Sbjct: 1   MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMK 60

Query: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPE 120
           RRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPE
Sbjct: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPE 120

Query: 121 EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAK 180
           EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAK
Sbjct: 121 EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAK 180

Query: 181 RTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233
           RTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 RTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233

[Close]

BLAST of Csor.00g019750 vs. NCBI nr
Match: KAG7030873.1 (Polyadenylate-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 454 bits (1167), Expect = 1.08e-160
Identity = 233/234 (99.57%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60
           MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK
Sbjct: 1   MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60

Query: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQ-DSSSTSATQAEKEEVDARSVYVGNVDYACTP 120
           RRLKEIEEEAGALREMQAKVEKEMGAVQ DSSSTSATQAEKEEVDARSVYVGNVDYACTP
Sbjct: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180
           EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180

Query: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233
           KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 234

[Close]

BLAST of Csor.00g019750 vs. NCBI nr
Match: XP_023516160.1 (polyadenylate-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 452 bits (1164), Expect = 3.10e-160
Identity = 232/234 (99.15%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60
           MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTN+NSKDLEDMK
Sbjct: 1   MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMK 60

Query: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQ-DSSSTSATQAEKEEVDARSVYVGNVDYACTP 120
           RRLKEIEEEAGALREMQAKVEKEMGAVQ DSSSTSATQAEKEEVDARSVYVGNVDYACTP
Sbjct: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180
           EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180

Query: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233
           KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 234

[Close]

BLAST of Csor.00g019750 vs. NCBI nr
Match: XP_022989941.1 (polyadenylate-binding protein 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 452 bits (1163), Expect = 4.56e-160
Identity = 232/235 (98.72%), Postives = 233/235 (99.15%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHE--VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLED 60
           MEHNFNYDEHEHEHE  VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTN+NSKDLED
Sbjct: 1   MEHNFNYDEHEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLED 60

Query: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACT 120
           MKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACT
Sbjct: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACT 120

Query: 121 PEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVS 180
           PEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVS
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVS 180

Query: 181 AKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233
           AKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 AKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235

[Close]

BLAST of Csor.00g019750 vs. ExPASy TrEMBL
Match: A0A6J1JLK3 (polyadenylate-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486896 PE=4 SV=1)

HSP 1 Score: 452 bits (1163), Expect = 2.21e-160
Identity = 232/235 (98.72%), Postives = 233/235 (99.15%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHE--VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLED 60
           MEHNFNYDEHEHEHE  VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTN+NSKDLED
Sbjct: 1   MEHNFNYDEHEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLED 60

Query: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACT 120
           MKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACT
Sbjct: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACT 120

Query: 121 PEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVS 180
           PEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVS
Sbjct: 121 PEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVS 180

Query: 181 AKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233
           AKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 AKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 235

[Close]

BLAST of Csor.00g019750 vs. ExPASy TrEMBL
Match: A0A6J1FPG9 (polyadenylate-binding protein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447055 PE=4 SV=1)

HSP 1 Score: 448 bits (1152), Expect = 9.08e-159
Identity = 230/233 (98.71%), Postives = 231/233 (99.14%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60
           MEHNFNYDEHEHE  VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTN+NSKDLEDMK
Sbjct: 1   MEHNFNYDEHEHE--VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMK 60

Query: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPE 120
           RRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPE
Sbjct: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPE 120

Query: 121 EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAK 180
           EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAK
Sbjct: 121 EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAK 180

Query: 181 RTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233
           RTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 RTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 231

[Close]

BLAST of Csor.00g019750 vs. ExPASy TrEMBL
Match: A0A6J1JNI9 (polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486896 PE=4 SV=1)

HSP 1 Score: 447 bits (1151), Expect = 1.55e-158
Identity = 232/236 (98.31%), Postives = 233/236 (98.73%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHE--VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLED 60
           MEHNFNYDEHEHEHE  VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTN+NSKDLED
Sbjct: 1   MEHNFNYDEHEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLED 60

Query: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQ-DSSSTSATQAEKEEVDARSVYVGNVDYAC 120
           MKRRLKEIEEEAGALREMQAKVEKEMGAVQ DSSSTSATQAEKEEVDARSVYVGNVDYAC
Sbjct: 61  MKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYAC 120

Query: 121 TPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV 180
           TPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV
Sbjct: 121 TPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKV 180

Query: 181 SAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233
           SAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 SAKRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 236

[Close]

BLAST of Csor.00g019750 vs. ExPASy TrEMBL
Match: A0A6J1FT42 (polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447055 PE=4 SV=1)

HSP 1 Score: 443 bits (1140), Expect = 6.36e-157
Identity = 230/234 (98.29%), Postives = 231/234 (98.72%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60
           MEHNFNYDEHEHE  VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTN+NSKDLEDMK
Sbjct: 1   MEHNFNYDEHEHE--VYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMK 60

Query: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQ-DSSSTSATQAEKEEVDARSVYVGNVDYACTP 120
           RRLKEIEEEAGALREMQAKVEKEMGAVQ DSSSTSATQAEKEEVDARSVYVGNVDYACTP
Sbjct: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180
           EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180

Query: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233
           KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 KRTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 232

[Close]

BLAST of Csor.00g019750 vs. ExPASy TrEMBL
Match: A0A1S3BWP8 (polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494443 PE=4 SV=1)

HSP 1 Score: 419 bits (1078), Expect = 1.61e-147
Identity = 220/233 (94.42%), Postives = 225/233 (96.57%), Query Frame = 0


Query: 1   MEHNFNYDEHEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMK 60
           ME N+NYDEHEHE  VYGGDIPDDAEMDADLDMSSGRADEEGY DAEP+N+NSKDLEDMK
Sbjct: 1   MERNYNYDEHEHE--VYGGDIPDDAEMDADLDMSSGRADEEGY-DAEPSNANSKDLEDMK 60

Query: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPE 120
           RRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVD+RSVYVGNVDYACTPE
Sbjct: 61  RRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSVYVGNVDYACTPE 120

Query: 121 EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAK 180
           EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAK
Sbjct: 121 EVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAK 180

Query: 181 RTNVPGMKQYRGRRPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 233
           RTNVPGMKQYRGRRPNP+GFRGRRPF   AP YPSYGYGRVPRFRRPMRYRPY
Sbjct: 181 RTNVPGMKQYRGRRPNPFGFRGRRPFTPTAP-YPSYGYGRVPRFRRPMRYRPY 229

[Close]

BLAST of Csor.00g019750 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 302.4 bits (773), Expect = 3.2e-82
Identity = 164/227 (72.25%), Postives = 184/227 (81.06%), Query Frame = 0


Query: 11  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGY---DDAEPTNSNSKDLEDMKRRLKEIE 70
           E EHEVYGG+IP++ E + D +       EEG    D+     S+S+DLEDMK+R+KEIE
Sbjct: 6   EQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEIE 65

Query: 71  EEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQ 130
           EEAGALREMQAK EK+MGA QD S    + AEKEEVD+RS+YVGNVDYACTPEEVQQHFQ
Sbjct: 66  EEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQ 125

Query: 131 SCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGM 190
           SCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTNVPGM
Sbjct: 126 SCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGM 185

Query: 191 KQYRGR-RPNPYGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 234
           +Q+RGR RP    FR  R FM   PFYP Y YGRVPRFRRPMRYRPY
Sbjct: 186 RQFRGRGRP----FRPMRGFMPGVPFYPPYAYGRVPRFRRPMRYRPY 227

[Close]

BLAST of Csor.00g019750 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-78
Identity = 160/224 (71.43%), Postives = 182/224 (81.25%), Query Frame = 0


Query: 11  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIEEEA 70
           E EHEVYGG+IPD  EMD D++  +   D    DD        K+L++MK+RLKE+E+EA
Sbjct: 3   EEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADD-----DAVKELDEMKKRLKEMEDEA 62

Query: 71  GALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCG 130
            ALREMQAKVEKEMGA QD +S +A QA KEEVDARSV+VGNVDYACTPEEVQQHFQ+CG
Sbjct: 63  AALREMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCG 122

Query: 131 TVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQY 190
           TV+RVTILTDKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKV  KRTNVPG+KQ+
Sbjct: 123 TVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQF 182

Query: 191 RGRRPNPY-GFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 234
           RGRR NPY G+R RRPFM+   + P YGYG+ PRFRRPMRY PY
Sbjct: 183 RGRRFNPYMGYRFRRPFMSPYMYSP-YGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of Csor.00g019750 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 285.0 bits (728), Expect = 5.3e-77
Identity = 162/264 (61.36%), Postives = 185/264 (70.08%), Query Frame = 0


Query: 11  EHEHEVYGGDIPDDAEMDADLDMSSGRADEEGY---DDAEPTNSNSKDLEDMKRRLKEIE 70
           E EHEVYGG+IP++ E + D +       EEG    D+     S+S+DLEDMK+R+KEIE
Sbjct: 6   EQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEIE 65

Query: 71  EEAGALREMQAKVEKEMGAVQ-------------------------------------DS 130
           EEAGALREMQAK EK+MGA Q                                     + 
Sbjct: 66  EEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKEI 125

Query: 131 SSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAY 190
            ++  + AEKEEVD+RS+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAY
Sbjct: 126 INSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAY 185

Query: 191 VEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGR-RPNPYGFRGRRPFMAD 234
           VEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTNVPGM+Q+RGR RP    FR  R FM  
Sbjct: 186 VEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRP----FRPMRGFMPG 245

[Close]

BLAST of Csor.00g019750 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 280.0 bits (715), Expect = 1.7e-75
Identity = 159/227 (70.04%), Postives = 175/227 (77.09%), Query Frame = 0


Query: 11  EHEHEVYGGDIPDDAEMDA---DLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIE 70
           E EHEVYGG+IP+  + D    D+DMS+  ADE+             +L +MKRRLKE+E
Sbjct: 3   EEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAV----------TELAEMKRRLKEME 62

Query: 71  EEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQ 130
           EEA ALREMQAKVEKEMGA QD +S +A Q  KEEVDARSVYVGNVDYACTPEEVQ HFQ
Sbjct: 63  EEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQ 122

Query: 131 SCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGM 190
           +CGTVNRVTIL DKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKVS KRTNVPGM
Sbjct: 123 TCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM 182

Query: 191 KQYRGRRPNP-YGFRGRRPFMADAPFYPSYGYGRVPRFRRPMRYRPY 234
           KQY   R NP  G+R RRPF+    FY  YGYG+ PRFRRPMRY PY
Sbjct: 183 KQYHPGRFNPSMGYRFRRPFVPPY-FYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of Csor.00g019750 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 256.1 bits (653), Expect = 2.6e-68
Identity = 148/213 (69.48%), Postives = 163/213 (76.53%), Query Frame = 0


Query: 11  EHEHEVYGGDIPDDAEMDA---DLDMSSGRADEEGYDDAEPTNSNSKDLEDMKRRLKEIE 70
           E EHEVYGG+IP+  + D    D+DMS+  ADE+             +L +MKRRLKE+E
Sbjct: 3   EEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAV----------TELAEMKRRLKEME 62

Query: 71  EEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDARSVYVGNVDYACTPEEVQQHFQ 130
           EEA ALREMQAKVEKEMGA QD +S +A Q  KEEVDARSVYVGNVDYACTPEEVQ HFQ
Sbjct: 63  EEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQ 122

Query: 131 SCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGM 190
           +CGTVNRVTIL DKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKVS KRTNVPGM
Sbjct: 123 TCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM 182

Query: 191 KQYRGRRPNP-YGFRGRRPFMADAPFYPSYGYG 220
           KQY   R NP  G+R RRPF+    FY  YGYG
Sbjct: 183 KQYHPGRFNPSMGYRFRRPFVPPY-FYSPYGYG 202

The following BLAST results are available for this feature:

BLAST of Csor.00g019750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VI4	4.5e-81	72.25	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
Q9FJN9	1.8e-77	71.43	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	2.4e-74	70.04	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
O14327	6.8e-37	52.60	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q28ZX3	2.8e-30	45.56	Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura OX=462...	[more]

BLAST of Csor.00g019750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600212.1	1.54e-162	100.00	Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023516168.1	4.42e-162	99.57	polyadenylate-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG7030873.1	1.08e-160	99.57	Polyadenylate-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023516160.1	3.10e-160	99.15	polyadenylate-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022989941.1	4.56e-160	98.72	polyadenylate-binding protein 1-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Csor.00g019750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JLK3	2.21e-160	98.72	polyadenylate-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FPG9	9.08e-159	98.71	polyadenylate-binding protein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JNI9	1.55e-158	98.31	polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FT42	6.36e-157	98.29	polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3BWP8	1.61e-147	94.42	polyadenylate-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Csor.00g019750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51120.1	3.2e-82	72.25	polyadenylate-binding protein 1	[more]
AT5G65260.1	1.3e-78	71.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	5.3e-77	61.36	polyadenylate-binding protein 1	[more]
AT5G10350.1	1.7e-75	70.04	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.2	2.6e-68	69.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 49..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR23236:SF75	POLYADENYLATE-BINDING PROTEIN 1-LIKE	coord: 10..232
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 10..232
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 107..178 e-value: 7.57452E-50 score: 155.527
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 107..178 e-value: 4.4E-22 score: 89.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 108..176 e-value: 3.5E-16 score: 58.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 106..182 score: 16.773018
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 24..189 e-value: 3.6E-28 score: 100.5
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 95..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g019750.m01	Csor.00g019750.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding