Csor.00g019450 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g019450
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 1721861 .. 1722195 (+)
RNA-Seq ExpressionCsor.00g019450
SyntenyCsor.00g019450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCATTACAGCTCGCACCATTGCTCTATGCAAACTGATGCTCGTCTTAACAATCATCTTACCCTCCAACAATGTCGCTGCAAGGAATTTACTCGACGTGCCTCGCTTCACTCGTAAGTTAATCACTAGATGTTTTAATGTGATATTATGAACTCTCGACGTCGGTACTCGATGTAATATTGGTCGTCTTTGTAACGTCGTTTTAATGTTGTTGAGTTTTGAATAGATGTGAAACGTGATGAGATGAATAATACAAATGTTGGAGTGCCTAATCCTCCTCAATCACCCGGAGATGGACCGTGGGATATCCCTTGGGATGGTAATGTTTGA

mRNA sequence

ATGGCTTTCATTACAGCTCGCACCATTGCTCTATGCAAACTGATGCTCGTCTTAACAATCATCTTACCCTCCAACAATGTCGCTGCAAGGAATTTACTCGACGTGCCTCGCTTCACTCATGTGAAACGTGATGAGATGAATAATACAAATGTTGGAGTGCCTAATCCTCCTCAATCACCCGGAGATGGACCGTGGGATATCCCTTGGGATGGTAATGTTTGA

Coding sequence (CDS)

ATGGCTTTCATTACAGCTCGCACCATTGCTCTATGCAAACTGATGCTCGTCTTAACAATCATCTTACCCTCCAACAATGTCGCTGCAAGGAATTTACTCGACGTGCCTCGCTTCACTCATGTGAAACGTGATGAGATGAATAATACAAATGTTGGAGTGCCTAATCCTCCTCAATCACCCGGAGATGGACCGTGGGATATCCCTTGGGATGGTAATGTTTGA

Protein sequence

MAFITARTIALCKLMLVLTIILPSNNVAARNLLDVPRFTHVKRDEMNNTNVGVPNPPQSPGDGPWDIPWDGNV
Homology
BLAST of Csor.00g019450 vs. NCBI nr
Match: KAG6600182.1 (hypothetical protein SDJN03_05415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149 bits (377), Expect = 2.02e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MAFITARTIALCKLMLVLTIILPSNNVAARNLLDVPRFTHVKRDEMNNTNVGVPNPPQSP 60
          MAFITARTIALCKLMLVLTIILPSNNVAARNLLDVPRFTHVKRDEMNNTNVGVPNPPQSP
Sbjct: 1  MAFITARTIALCKLMLVLTIILPSNNVAARNLLDVPRFTHVKRDEMNNTNVGVPNPPQSP 60

Query: 61 GDGPWDIPWDGNV 73
          GDGPWDIPWDGNV
Sbjct: 61 GDGPWDIPWDGNV 73

BLAST of Csor.00g019450 vs. NCBI nr
Match: KAA0044642.1 (hypothetical protein E6C27_scaffold46G003970 [Cucumis melo var. makuwa] >TYK16946.1 hypothetical protein E5676_scaffold130G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 6.89e-19
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 11 LCKLMLVL--TIILPSNNVAARNLLDVPRFTHVKRDEMNNTNVGVPNPPQSPG-DGPWDI 70
          LCKL++++  TII  SNNVA RNLL +    HVK DEMNNT+V  PNPP+SP  DGPWD 
Sbjct: 7  LCKLIMLILVTIIFASNNVATRNLLSMSHLAHVKHDEMNNTSVPAPNPPKSPPEDGPWDD 66

Query: 71 PWDGN 72
          PWDGN
Sbjct: 67 PWDGN 71

BLAST of Csor.00g019450 vs. NCBI nr
Match: KAE8649133.1 (hypothetical protein Csa_014439, partial [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 6.26e-08
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 11  LCKLMLVL--TIILPSNNVAARNLLDVPRFTHVKRDEMNNTNVGVPNPPQSPGDGPWDIP 70
           LCKL++++  TII  SNNVA RNLL +P   +VKRDE+NN       PPQ+  D     P
Sbjct: 47  LCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINN-------PPQTADD----EP 100

Query: 71  WDGNV 73
           WDGN+
Sbjct: 107 WDGNI 100

BLAST of Csor.00g019450 vs. NCBI nr
Match: KAE8649132.1 (hypothetical protein Csa_015133 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 1.37e-07
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 6  ARTIALCKLMLVL--TIILPSNNVAARNLLDVPRFTHVKRDEMNNTNVGVPNPPQSPGDG 65
          A + ALCKL++++  TI+  SNN A RNLL +P   HV  DEM N+      PP  P DG
Sbjct: 2  ASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTNS------PPTPPKDG 57

BLAST of Csor.00g019450 vs. ExPASy TrEMBL
Match: A0A5A7TMV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00830 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.34e-19
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 11 LCKLMLVL--TIILPSNNVAARNLLDVPRFTHVKRDEMNNTNVGVPNPPQSPG-DGPWDI 70
          LCKL++++  TII  SNNVA RNLL +    HVK DEMNNT+V  PNPP+SP  DGPWD 
Sbjct: 7  LCKLIMLILVTIIFASNNVATRNLLSMSHLAHVKHDEMNNTSVPAPNPPKSPPEDGPWDD 66

Query: 71 PWDGN 72
          PWDGN
Sbjct: 67 PWDGN 71

BLAST of Csor.00g019450 vs. ExPASy TrEMBL
Match: A0A0A0KZ52 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022280 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.18e-08
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 11 LCKLMLVL--TIILPSNNVAARNLLDVPRFTHVKRDEMNNTNVGVPNPPQSPGDGPWDIP 70
          LCKL++++  TII  SNNVA RNLL +P   +VKRDE+NN       PPQ+  D     P
Sbjct: 7  LCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEINN-------PPQTADD----EP 60

Query: 71 WDGNV 73
          WDGN+
Sbjct: 67 WDGNI 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6600182.12.02e-45100.00hypothetical protein SDJN03_05415, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0044642.16.89e-1964.62hypothetical protein E6C27_scaffold46G003970 [Cucumis melo var. makuwa] >TYK1694... [more]
KAE8649133.16.26e-0850.77hypothetical protein Csa_014439, partial [Cucumis sativus][more]
KAE8649132.11.37e-0748.39hypothetical protein Csa_015133 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5A7TMV83.34e-1964.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KZ521.18e-0850.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022280 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g019450.m01Csor.00g019450.m01mRNA