Csor.00g019410 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g019410
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 1708504 .. 1708885 (+)
RNA-Seq ExpressionCsor.00g019410
SyntenyCsor.00g019410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCCAAGCGCCTTTGTTCCTTGGAAGGAGGTAGTCTTCTTCGCTTTGCTTCTTCTGGCTTTCAACGTTTCCGCTAGGGAACTTGTTGGAACCAACATTGTGGCTCGCACTGTCCGTAAGTCTCCTCTTTTTAATAATACCCATCTACCAATGTTGTTTTCACTTTACTTCTTGTTCTTTTTTAATAGATGAGATGACAATAGAGACGAATGTGGGCAGGAGATTGATTGCAAGACAGTTGGATACCTCTTGGGGAGGAAATTATTCTCCTCCTCCCCCTCGTCGTCCTCCTCCTCCGCCTCCTCCTTGTCGTTATACTCCTCGTCCTTCTCTTCCTCGTTCTCGTCCCGGTTCCCGTCCTCTTCCTCCACGCTGA

mRNA sequence

ATGGCTTCCCCAAGCGCCTTTGTTCCTTGGAAGGAGGTAGTCTTCTTCGCTTTGCTTCTTCTGGCTTTCAACGTTTCCGCTAGGGAACTTGTTGGAACCAACATTGTGGCTCGCACTGTCCATGAGATGACAATAGAGACGAATGTGGGCAGGAGATTGATTGCAAGACAGTTGGATACCTCTTGGGGAGGAAATTATTCTCCTCCTCCCCCTCGTCGTCCTCCTCCTCCGCCTCCTCCTTGTCGTTATACTCCTCGTCCTTCTCTTCCTCGTTCTCGTCCCGGTTCCCGTCCTCTTCCTCCACGCTGA

Coding sequence (CDS)

ATGGCTTCCCCAAGCGCCTTTGTTCCTTGGAAGGAGGTAGTCTTCTTCGCTTTGCTTCTTCTGGCTTTCAACGTTTCCGCTAGGGAACTTGTTGGAACCAACATTGTGGCTCGCACTGTCCATGAGATGACAATAGAGACGAATGTGGGCAGGAGATTGATTGCAAGACAGTTGGATACCTCTTGGGGAGGAAATTATTCTCCTCCTCCCCCTCGTCGTCCTCCTCCTCCGCCTCCTCCTTGTCGTTATACTCCTCGTCCTTCTCTTCCTCGTTCTCGTCCCGGTTCCCGTCCTCTTCCTCCACGCTGA

Protein sequence

MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGRRLIARQLDTSWGGNYSPPPPRRPPPPPPPCRYTPRPSLPRSRPGSRPLPPR
Homology
BLAST of Csor.00g019410 vs. NCBI nr
Match: KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196 bits (497), Expect = 7.93e-63
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGRRLIARQLDT 60
           MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGRRLIARQLDT
Sbjct: 1   MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGRRLIARQLDT 60

Query: 61  SWGGNYSPPPPRRPPPPPPPCRYTPRPSLPRSRPGSRPLPPR 102
           SWGGNYSPPPPRRPPPPPPPCRYTPRPSLPRSRPGSRPLPPR
Sbjct: 61  SWGGNYSPPPPRRPPPPPPPCRYTPRPSLPRSRPGSRPLPPR 102

BLAST of Csor.00g019410 vs. NCBI nr
Match: KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186 bits (472), Expect = 5.01e-59
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 1   MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGRRLIARQLDT 60
           MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGRRLIARQLDT
Sbjct: 1   MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGRRLIARQLDT 60

Query: 61  SWGGNYSPPPPRRPPPPPPPCRYTPRPSLPRSRPGSRPLPPR 102
           SWGGNYSPPPPRR PPPPP CRYTPRPSLPRSRPGSRPLPPR
Sbjct: 61  SWGGNYSPPPPRRRPPPPP-CRYTPRPSLPRSRPGSRPLPPR 101

BLAST of Csor.00g019410 vs. NCBI nr
Match: KAG7014831.1 (hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 6.88e-24
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 0

Query: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETN---VGRRLIARQ 60
          MASP+A V WK+V F   LL+A +VSAREL G N+V RT  EM    N   VG RLIARQ
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIVGSRLIARQ 60

Query: 61 LDTSWGGNYSPPPPRRPPPPP 78
          LDT+W G+YSPPPPR PPPPP
Sbjct: 61 LDTAWRGHYSPPPPRSPPPPP 81

BLAST of Csor.00g019410 vs. NCBI nr
Match: KAG6576804.1 (hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 7.98e-23
Identity = 51/81 (62.96%), Postives = 58/81 (71.60%), Query Frame = 0

Query: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNV---GRRLIARQ 60
          MASP+A V WK+V F   LL+A +VSAREL G N+V RT  EM    N    G RLIARQ
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGANVVTRTAREMATMPNGVIGGSRLIARQ 60

Query: 61 LDTSWGGNYSPPPPRRPPPPP 78
          LDT+W G+YSPPPPR PPPPP
Sbjct: 61 LDTAWRGHYSPPPPRSPPPPP 81

BLAST of Csor.00g019410 vs. NCBI nr
Match: KGN57261.1 (hypothetical protein Csa_010292 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.22e-15
Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 11 KEVVFFALLLLAFNVSARELVGTNIVARTVHEMT-IETN--VGRRLIARQLDTSWGGNYS 70
          + +VFF+LLLLAFN S      T ++AR   EM  +ETN  +GR+L ARQLDTSW GNYS
Sbjct: 5  RFLVFFSLLLLAFNFS------TGVLARPAREMVAVETNWEMGRKLTARQLDTSWKGNYS 64

Query: 71 PPPPRRPPPPPPPCRYTPRP 87
          PPPP RPPPPPP  R  PRP
Sbjct: 65 PPPPNRPPPPPP-YRQLPRP 77

BLAST of Csor.00g019410 vs. ExPASy TrEMBL
Match: A0A0A0LB11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.92e-16
Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 11 KEVVFFALLLLAFNVSARELVGTNIVARTVHEMT-IETN--VGRRLIARQLDTSWGGNYS 70
          + +VFF+LLLLAFN S      T ++AR   EM  +ETN  +GR+L ARQLDTSW GNYS
Sbjct: 5  RFLVFFSLLLLAFNFS------TGVLARPAREMVAVETNWEMGRKLTARQLDTSWKGNYS 64

Query: 71 PPPPRRPPPPPPPCRYTPRP 87
          PPPP RPPPPPP  R  PRP
Sbjct: 65 PPPPNRPPPPPP-YRQLPRP 77

BLAST of Csor.00g019410 vs. ExPASy TrEMBL
Match: A0A0A0L5K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.59e-12
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 6  AFVPWKEVV-FFALLLLAFNVSARELVGTNIVARTVHE--MTIETN--VGRRLIARQLDT 65
          A V WK+V+ FF LLLLA+N+SARELV     ART  E  +T E N  + RRL  RQLDT
Sbjct: 7  ASVAWKKVIIFFTLLLLAYNISARELV-----ARTTCEPSLTTEMNDVIDRRLFVRQLDT 66

Query: 66 SWGGNYSPPP 70
          SW GNY PPP
Sbjct: 67 SWRGNYFPPP 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6600178.17.93e-63100.00hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030841.15.01e-5998.04hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7014831.16.88e-2464.20hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6576804.17.98e-2362.96hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57261.11.22e-1561.25hypothetical protein Csa_010292 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0LB115.92e-1661.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1[more]
A0A0A0L5K77.59e-1260.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g019410.m01Csor.00g019410.m01mRNA