Csor.00g018640 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g018640
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	9,9'-di-cis-zeta-carotene desaturase
Location	Csor_Chr05: 9279956 .. 9281576 (-)
RNA-Seq Expression	Csor.00g018640
Synteny	Csor.00g018640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGGAATCTGTTACTGCCCACCGCTTCCCCCATCTCTATCCCCCAAGGTTTGCATCTTCTAGCCGGTGGTTTCATTTCATCTCGCCGTCCATTTCTGTTCCTAATTCTCTTCGATTCATTTTGAACCATTCGTTTGGTAGATGGTAACCGCCATACGATGCTTCTCAAGCTCGCCGGAGAATTCCAATAGTAGCCGGAAGAAAGAGGCATCTGCGATTGTGAAAATCGCTGTGAGTGGAGTCACAGAGCTTCTTAGGCTTTTCTCGTCTCCGATCAGTAAGAGGTAATTTCGTTCTTGAAATCCACGCTCGCTTTGTAGTTGCATGAATAGTTTTCTTGAACATGCGAGGGAGAGATATGAATTCGATTCTGGTCCGTGTCTGTGTTGCAGAGTTGATGGAGTTGGGGACAATCAGGGAGAGGAATTTGTAGTTGCAGGCATGGACGATGTTCTAAATATCCTGAAATCAGATTATGAGAATGCTTACTTTGTTACTGGTATATTCATATATTTTCCTCTATCATGCTTTGTCATTGTGCTTATACCTGCACTAGAATTATGAAATCTTCTGCTCATTGCCATCTGTTCATGCTATTGGTATAATAAATTCTATGCAATTTCTTGCTTACAATTTATACATTGAGGTGGTAAGGCTGCAAAATTAGATGACCCTTATTGAGGAGGTGCTCGAGTTCACCATTTTGGGAGAAGGGCAATTCCTTTCGTGCGAACTAGCTTCTTTGCAATACTATGTAGAGCTTGGCTTGAGAGGAACAATAGGATTGTTAGAGAGGTGGGGAGATCGTGTGATGAGGATTGGGAGGTGCTCGAGTTCACCTTTTTGGGAGAGGGGCAAGTTTTTGTGGCAAACTAGCTTCTTTGCAATACTATGTGGAGCTTGGATTGAAAGGTACAATAGGATTTTGAGAGAGGTGGGGAGATCGTGTGATGAGGATTGGGAGGTGCTCGAGTTCACCTTTTTGGGAGGGGCAATTTTTTGTGGCAACCTAGCTTCTTTGCAATACTATGTGGTGCTTGGCTCGAGAGGTACAATAGGATTTTTAGAGAGGTGGGGCGGTCGTGTGATGAGGATTGGGAGGTGCTCGAGTTAACCTTTTCGGGTGAGGCGCAATTTTTTGTGGCGAACTAGCTTCTTTGCAATACTATGTAGAGCTTGGCTCGAGAGGAACAATAGGATTTTCAGAGAGGTGGGGAGGTCGTGTGATGAGGTTTGGGAGGTGGTGCGATACAATGCCTTCTCGTGGGGTTCGGTCACTAGGTCTTTTTGTAATTACGACCTTAGTTTGATTTCGTCAAATTAGAGTCCTTTTTTTTTTTTTTGTAGTTTTTTTGGAGTCTCCCTCGTTTTGTTGGTCTGGATTTCTTTTTTTGTATGCCTTGTGCATTCTTTTATCTCTATGAATGAAAGCTTGATTGCTTATCATATATATATATACTTTAAATTGTTGCTGTGTGTAACTGCTGCATTAAACCAGCAATGAAGCTTTGTAAGTGTATTTTATGATGGGCTTATACTGAAAACAGGGATATTCACTTCTGCCATTTATGCTGATGATTGTCTCTTTGAAGATCCAACCATCAGGTTTTCGAGGTAA

mRNA sequence

ATGACCGGAATCTGTTACTGCCCACCGCTTCCCCCATCTCTATCCCCCAAGATGGTAACCGCCATACGATGCTTCTCAAGCTCGCCGGAGAATTCCAATAGTAGCCGGAAGAAAGAGGCATCTGCGATTGTGAAAATCGCTGTGAGTGGAGTCACAGAGCTTCTTAGGCTTTTCTCGTCTCCGATCAGTAAGAGAGTTGATGGAGTTGGGGACAATCAGGGAGAGGAATTTGTAGTTGCAGGCATGGACGATGTTCTAAATATCCTGAAATCAGATTATGAGAATGCTTACTTTGTTACTGGGATATTCACTTCTGCCATTTATGCTGATGATTGTCTCTTTGAAGATCCAACCATCAGGTTTTCGAGGTAA

Coding sequence (CDS)

ATGACCGGAATCTGTTACTGCCCACCGCTTCCCCCATCTCTATCCCCCAAGATGGTAACCGCCATACGATGCTTCTCAAGCTCGCCGGAGAATTCCAATAGTAGCCGGAAGAAAGAGGCATCTGCGATTGTGAAAATCGCTGTGAGTGGAGTCACAGAGCTTCTTAGGCTTTTCTCGTCTCCGATCAGTAAGAGAGTTGATGGAGTTGGGGACAATCAGGGAGAGGAATTTGTAGTTGCAGGCATGGACGATGTTCTAAATATCCTGAAATCAGATTATGAGAATGCTTACTTTGTTACTGGGATATTCACTTCTGCCATTTATGCTGATGATTGTCTCTTTGAAGATCCAACCATCAGGTTTTCGAGGTAA

Protein sequence

MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSSPISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIRFSR

Homology

[Close]

BLAST of Csor.00g018640 vs. NCBI nr
Match: KAG6599236.1 (hypothetical protein SDJN03_09014, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243 bits (620), Expect = 6.42e-81
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60
           MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS
Sbjct: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60

Query: 61  PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120
           PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR
Sbjct: 61  PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120

Query: 121 FSR 123
           FSR
Sbjct: 121 FSR 123

[Close]

BLAST of Csor.00g018640 vs. NCBI nr
Match: KAG6599294.1 (hypothetical protein SDJN03_09072, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239 bits (610), Expect = 5.28e-78
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60
           MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS
Sbjct: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60

Query: 61  PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120
           PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR
Sbjct: 61  PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120

[Close]

BLAST of Csor.00g018640 vs. NCBI nr
Match: XP_022946926.1 (uncharacterized protein LOC111450860 [Cucurbita moschata])

HSP 1 Score: 238 bits (606), Expect = 2.14e-77
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60
           MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS
Sbjct: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60

Query: 61  PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120
           PISKRVDGVGDNQGEEFVVAG+DDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR
Sbjct: 61  PISKRVDGVGDNQGEEFVVAGIDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120

[Close]

BLAST of Csor.00g018640 vs. NCBI nr
Match: XP_023545588.1 (uncharacterized protein LOC111804973 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235 bits (599), Expect = 2.49e-76
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60
           MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSN SR+KEASAIVKIAVSGVTELLRLFSS
Sbjct: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNGSRRKEASAIVKIAVSGVTELLRLFSS 60

Query: 61  PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120
           PISKRVDGVGDNQGEEFVVAG+DDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR
Sbjct: 61  PISKRVDGVGDNQGEEFVVAGIDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120

[Close]

BLAST of Csor.00g018640 vs. NCBI nr
Match: XP_022999247.1 (uncharacterized protein LOC111493675 [Cucurbita maxima])

HSP 1 Score: 233 bits (593), Expect = 2.04e-75
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60
           MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSN SRKKEASAIVKIAVSG TELLRLFSS
Sbjct: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNGSRKKEASAIVKIAVSGATELLRLFSS 60

Query: 61  PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120
           PISKRV+GVGDNQGEEFVVAG+DDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR
Sbjct: 61  PISKRVNGVGDNQGEEFVVAGIDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120

[Close]

BLAST of Csor.00g018640 vs. ExPASy TrEMBL
Match: A0A6J1G4Y1 (uncharacterized protein LOC111450860 OS=Cucurbita moschata OX=3662 GN=LOC111450860 PE=4 SV=1)

HSP 1 Score: 238 bits (606), Expect = 1.04e-77
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60
           MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS
Sbjct: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60

Query: 61  PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120
           PISKRVDGVGDNQGEEFVVAG+DDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR
Sbjct: 61  PISKRVDGVGDNQGEEFVVAGIDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120

[Close]

BLAST of Csor.00g018640 vs. ExPASy TrEMBL
Match: A0A6J1KAD4 (uncharacterized protein LOC111493675 OS=Cucurbita maxima OX=3661 GN=LOC111493675 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 9.87e-76
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60
           MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSN SRKKEASAIVKIAVSG TELLRLFSS
Sbjct: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNGSRKKEASAIVKIAVSGATELLRLFSS 60

Query: 61  PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120
           PISKRV+GVGDNQGEEFVVAG+DDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR
Sbjct: 61  PISKRVNGVGDNQGEEFVVAGIDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120

[Close]

BLAST of Csor.00g018640 vs. ExPASy TrEMBL
Match: A0A0A0LJD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011600 PE=4 SV=1)

HSP 1 Score: 214 bits (546), Expect = 1.30e-68
Identity = 106/121 (87.60%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60
           M GICYCPPLPPSLSPK V+ IRCFSSSPENSN SRKKEASAIVKI VSG+TELLRLFSS
Sbjct: 1   MAGICYCPPLPPSLSPKTVSVIRCFSSSPENSNGSRKKEASAIVKITVSGITELLRLFSS 60

Query: 61  PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120
           PISKRVD + DNQGEEFVV G+D+V+NILKSDYENAYFVTGIFTSAIY DDCLFEDPTIR
Sbjct: 61  PISKRVDEIRDNQGEEFVVTGVDEVVNILKSDYENAYFVTGIFTSAIYTDDCLFEDPTIR 120

[Close]

BLAST of Csor.00g018640 vs. ExPASy TrEMBL
Match: A0A1S3C2Z9 (uncharacterized protein LOC103495870 OS=Cucumis melo OX=3656 GN=LOC103495870 PE=4 SV=1)

HSP 1 Score: 201 bits (510), Expect = 4.11e-63
Identity = 100/121 (82.64%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60
           M GI YCPPLPPSLSPK V+AIRC SSSPENSN SRKKEAS I+KI VSG+TELLRLFSS
Sbjct: 1   MAGISYCPPLPPSLSPKTVSAIRCLSSSPENSNGSRKKEASTILKITVSGITELLRLFSS 60

Query: 61  PISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIR 120
           PISKRVDG+ DNQ EEFVV G+D+V++ILKSDYENAYFVTG FTSAIY D CLFEDPTIR
Sbjct: 61  PISKRVDGIRDNQEEEFVVTGVDEVVDILKSDYENAYFVTGTFTSAIYTDHCLFEDPTIR 120

[Close]

BLAST of Csor.00g018640 vs. ExPASy TrEMBL
Match: A0A6J1CMH1 (uncharacterized protein LOC111012984 isoform X5 OS=Momordica charantia OX=3673 GN=LOC111012984 PE=4 SV=1)

HSP 1 Score: 174 bits (442), Expect = 4.55e-52
Identity = 97/145 (66.90%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 1   MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFSS 60
           M GIC  PPLP SLSPK    +RCFSSSP+NS   RKKEAS IVKIAVSGVTELLRLFSS
Sbjct: 34  MAGICCSPPLPSSLSPKTKYDVRCFSSSPDNSGGRRKKEASPIVKIAVSGVTELLRLFSS 93

Query: 61  P------------------------ISKRVDGVGDNQGEEFVVAGMDDVLNILKSDYENA 120
                                    +S R DGVGDNQ EEFVVAG+DDVL+ILKSDY+NA
Sbjct: 94  SKSSTPKWFMKMRPGHMNSILFGLCLSCRFDGVGDNQKEEFVVAGVDDVLDILKSDYKNA 153

[Close]

BLAST of Csor.00g018640 vs. TAIR 10
Match: AT3G04890.1 (Uncharacterized conserved protein (DUF2358) )

HSP 1 Score: 100.5 bits (249), Expect = 9.8e-22
Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 23  RCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFS-SPISKRVDGVGDNQGEEFVVAG 82
           RCFS SPE       K+  A++K AVSGVTE LRL S +P S  +    D    E     
Sbjct: 24  RCFSGSPE-------KKTPAVLKWAVSGVTEFLRLISGAPSSTSIATNKDRSKNEVTAGD 83

Query: 83  MDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIRF 122
           +DDV+ IL+SDY N YFVTG+ TSAIY+DDC+FEDPTI F
Sbjct: 84  VDDVMGILRSDYRNFYFVTGVLTSAIYSDDCIFEDPTISF 116

[Close]

BLAST of Csor.00g018640 vs. TAIR 10
Match: AT3G04890.2 (Uncharacterized conserved protein (DUF2358) )

HSP 1 Score: 100.5 bits (249), Expect = 9.8e-22
Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 23  RCFSSSPENSNSSRKKEASAIVKIAVSGVTELLRLFS-SPISKRVDGVGDNQGEEFVVAG 82
           RCFS SPE       K+  A++K AVSGVTE LRL S +P S  +    D    E     
Sbjct: 24  RCFSGSPE-------KKTPAVLKWAVSGVTEFLRLISGAPSSTSIATNKDRSKNEVTAGD 83

Query: 83  MDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIRF 122
           +DDV+ IL+SDY N YFVTG+ TSAIY+DDC+FEDPTI F
Sbjct: 84  VDDVMGILRSDYRNFYFVTGVLTSAIYSDDCIFEDPTISF 116

The following BLAST results are available for this feature:

BLAST of Csor.00g018640 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g018640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599236.1	6.42e-81	100.00	hypothetical protein SDJN03_09014, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6599294.1	5.28e-78	100.00	hypothetical protein SDJN03_09072, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022946926.1	2.14e-77	99.17	uncharacterized protein LOC111450860 [Cucurbita moschata]	[more]
XP_023545588.1	2.49e-76	97.52	uncharacterized protein LOC111804973 [Cucurbita pepo subsp. pepo]	[more]
XP_022999247.1	2.04e-75	96.69	uncharacterized protein LOC111493675 [Cucurbita maxima]	[more]

BLAST of Csor.00g018640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G4Y1	1.04e-77	99.17	uncharacterized protein LOC111450860 OS=Cucurbita moschata OX=3662 GN=LOC1114508...	[more]
A0A6J1KAD4	9.87e-76	96.69	uncharacterized protein LOC111493675 OS=Cucurbita maxima OX=3661 GN=LOC111493675...	[more]
A0A0A0LJD8	1.30e-68	87.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011600 PE=4 SV=1	[more]
A0A1S3C2Z9	4.11e-63	82.64	uncharacterized protein LOC103495870 OS=Cucumis melo OX=3656 GN=LOC103495870 PE=...	[more]
A0A6J1CMH1	4.55e-52	66.90	uncharacterized protein LOC111012984 isoform X5 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Csor.00g018640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04890.1	9.8e-22	54.00	Uncharacterized conserved protein (DUF2358)	[more]
AT3G04890.2	9.8e-22	54.00	Uncharacterized conserved protein (DUF2358)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34123	FAMILY NOT NAMED	coord: 12..122
None	No IPR available	PANTHER	PTHR34123:SF4	PHOSPHORIBOSYLTRANSFERASE-LIKE PROTEIN, PUTATIVE (DUF2358)-RELATED	coord: 12..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g018640.m01	Csor.00g018640.m01	mRNA