Csor.00g018510 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g018510
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr03: 3056802 .. 3057236 (-)
RNA-Seq Expression	Csor.00g018510
Synteny	Csor.00g018510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAAGAGAAAGATAAAGGAGTAAAGGAGCAGGAACAGGAGCAGGAGTTCCGGTCGTTCAGTTTCATCTTTAGGCTTTCGAACAGTAAAAGAAAGAGAAAGGCTATTAGGTTAGGTGTAGTACAGAGTGCAAGGAGAAGAGAAATAAATGAATGGCATGCTGCTCTCTCTTTTCTAATGAATGAATGGCATGCTGCTCTCTCTTTGATAAAGAAAGGTTACGGAGTTCTTGATAATGAAGAGAATATGCGAGAACGAGGCAAGGCAAGCAAACAAAGAGTGAAATCAGGAAGTCAAAGAAAGGGGAAAGGGGAACGAGGTTACAAGAGAGTCCAGTCAAGTCCATTACAAGAATACATAGGGAGAGCAGTCAAAGAAGGCAGACAGGCAGCGGAGCATGCATCTTTCTTACAGTTACAGGCAGGAGAGTAA

mRNA sequence

ATGAATAAAGAGAAAGATAAAGGAGTAAAGGAGCAGGAACAGGAGCAGGAGTTCCGGTCGTTCAGTTTCATCTTTAGGCTTTCGAACAGTAAAAGAAAGAGAAAGGCTATTAGGTTAGGTGTAGTACAGAGTGCAAGGAGAAGAGAAATAAATGAATGGCATGCTGCTCTCTCTTTTCTAATGAATGAATGGCATGCTGCTCTCTCTTTGATAAAGAAAGGTTACGGAGTTCTTGATAATGAAGAGAATATGCGAGAACGAGGCAAGGCAAGCAAACAAAGAGTGAAATCAGGAAGTCAAAGAAAGGGGAAAGGGGAACGAGGTTACAAGAGAGTCCAGTCAAGTCCATTACAAGAATACATAGGGAGAGCAGTCAAAGAAGGCAGACAGGCAGCGGAGCATGCATCTTTCTTACAGTTACAGGCAGGAGAGTAA

Coding sequence (CDS)

ATGAATAAAGAGAAAGATAAAGGAGTAAAGGAGCAGGAACAGGAGCAGGAGTTCCGGTCGTTCAGTTTCATCTTTAGGCTTTCGAACAGTAAAAGAAAGAGAAAGGCTATTAGGTTAGGTGTAGTACAGAGTGCAAGGAGAAGAGAAATAAATGAATGGCATGCTGCTCTCTCTTTTCTAATGAATGAATGGCATGCTGCTCTCTCTTTGATAAAGAAAGGTTACGGAGTTCTTGATAATGAAGAGAATATGCGAGAACGAGGCAAGGCAAGCAAACAAAGAGTGAAATCAGGAAGTCAAAGAAAGGGGAAAGGGGAACGAGGTTACAAGAGAGTCCAGTCAAGTCCATTACAAGAATACATAGGGAGAGCAGTCAAAGAAGGCAGACAGGCAGCGGAGCATGCATCTTTCTTACAGTTACAGGCAGGAGAGTAA

Protein sequence

MNKEKDKGVKEQEQEQEFRSFSFIFRLSNSKRKRKAIRLGVVQSARRREINEWHAALSFLMNEWHAALSLIKKGYGVLDNEENMRERGKASKQRVKSGSQRKGKGERGYKRVQSSPLQEYIGRAVKEGRQAAEHASFLQLQAGE

Homology

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BLAST of Csor.00g018510 vs. NCBI nr
Match: KAG6603419.1 (hypothetical protein SDJN03_04028, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269 bits (687), Expect = 1.86e-90
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MNKEKDKGVKEQEQEQEFRSFSFIFRLSNSKRKRKAIRLGVVQSARRREINEWHAALSFL 60
           MNKEKDKGVKEQEQEQEFRSFSFIFRLSNSKRKRKAIRLGVVQSARRREINEWHAALSFL
Sbjct: 1   MNKEKDKGVKEQEQEQEFRSFSFIFRLSNSKRKRKAIRLGVVQSARRREINEWHAALSFL 60

Query: 61  MNEWHAALSLIKKGYGVLDNEENMRERGKASKQRVKSGSQRKGKGERGYKRVQSSPLQEY 120
           MNEWHAALSLIKKGYGVLDNEENMRERGKASKQRVKSGSQRKGKGERGYKRVQSSPLQEY
Sbjct: 61  MNEWHAALSLIKKGYGVLDNEENMRERGKASKQRVKSGSQRKGKGERGYKRVQSSPLQEY 120

Query: 121 IGRAVKEGRQAAEHASFLQLQAGE 144
           IGRAVKEGRQAAEHASFLQLQAGE
Sbjct: 121 IGRAVKEGRQAAEHASFLQLQAGE 144

The following BLAST results are available for this feature:

BLAST of Csor.00g018510 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g018510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603419.1	1.86e-90	100.00	hypothetical protein SDJN03_04028, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g018510 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g018510 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g018510.m01	Csor.00g018510.m01	mRNA