Csor.00g017350 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g017350
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr13: 161490 .. 162218 (+)
RNA-Seq ExpressionCsor.00g017350
SyntenyCsor.00g017350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCCAATTTGGTATTCCACTGTGGGCCGATTTGGGCTTCCACTATCGGCCAATTCGGGTTACCACTGTGGGCCAGCCGATTTGGGCCTCCATTCTGGGCCGGCCGATTTCGGCTTCCACTATGGGCCGGTTTGGGCCTCCACTGTGGGCCGGCCGATTTCGGCTTCCACTATGGGCCGATTTCGGCTTCCACTATGCGCCGATTTGGGCTTCCACTATGGGGCCGATTTCGGCTTCCACTATGCGCCGATTTGGGCTTCCACTATGGAGCCGATTTGCGCTGGGCCTCCACTGTACGCCGGCAGATTTGGGCCTCAACTGTGGGCCGGCCGATTAGGCCGGGCCTCCACAGTGGGCCGGCTGATTTGGGCCTCAACTGTGGGCCGGCATGTTTGGGCTGGGCCTCCACATTCGGCCGATTTGGGCTGTGCCTCTACTGTGGGCCGGCCGATTTGGGCTTCCACAGTCGGCCGATTTGAAATGGGCCTCCACTGTGGCCCAATTGGGCCTTCCCACTATGGGCCGATTTGGGCCTCCATTACGGGCCGGCCGATTTTGGGCTCCCACTGTGGGTGGATTCGGCCTCCACTATGGGCCAATTTGGGCTTCCACTATGGGCCGACTTTGGGCCTCCACTGTGAGCCGGCCGATTTGGGCTTTCACTGTGGGCCGATTTTTGAACTGGGCCTCTCCTGTGGGCCGATTTGGGCCTCCACTATGGGCTGA

mRNA sequence

ATGGGCCCAATTTGGTATTCCACTGTGGGCCGATTTGGGCTTCCACTATCGGCCAATTCGGGTTACCACTGTGGGCCAGCCGATTTGGGCCTCCATTCTGGGCCGGCCGATTTCGGCTTCCACTATGGGCCGGTTTGGGCCTCCACTGTGGGCCGGCCGATTTCGGCTTCCACTATGGGCCGATTTCGGCTTCCACTATGCGCCGATTTGGGCTTCCACTATGGGGCCGATTTCGGCTTCCACTATGCGCCGATTTGGGCTTCCACTATGGAGCCGATTTGCGCTGGGCCTCCACTGTACGCCGGCAGATTTGGGCCTCAACTGTGGGCCGGCCGATTAGGCCGGGCCTCCACAGTGGGCCGGCTGATTTGGGCCTCAACTGTGGGCCGGCATGTTTGGGCTGGGCCTCCACATTCGGCCGATTTGGGCTGTGCCTCTACTGTGGGCCGGCCGATTTGGGCTTCCACAGTCGGCCGATTTGAAATGGGCCTCCACTGTGGCCCAATTGGGCCTTCCCACTATGGGCCGATTTGGGCCTCCATTACGGGCCGGCCGATTTTGGGCTCCCACTGTGGGTGGATTCGGCCTCCACTATGGGCCAATTTGGGCTTCCACTATGGGCCGACTTTGGGCCTCCACTGTGAGCCGGCCGATTTGGGCTTTCACTGTGGGCCGATTTTTGAACTGGGCCTCTCCTGTGGGCCGATTTGGGCCTCCACTATGGGCTGA

Coding sequence (CDS)

ATGGGCCCAATTTGGTATTCCACTGTGGGCCGATTTGGGCTTCCACTATCGGCCAATTCGGGTTACCACTGTGGGCCAGCCGATTTGGGCCTCCATTCTGGGCCGGCCGATTTCGGCTTCCACTATGGGCCGGTTTGGGCCTCCACTGTGGGCCGGCCGATTTCGGCTTCCACTATGGGCCGATTTCGGCTTCCACTATGCGCCGATTTGGGCTTCCACTATGGGGCCGATTTCGGCTTCCACTATGCGCCGATTTGGGCTTCCACTATGGAGCCGATTTGCGCTGGGCCTCCACTGTACGCCGGCAGATTTGGGCCTCAACTGTGGGCCGGCCGATTAGGCCGGGCCTCCACAGTGGGCCGGCTGATTTGGGCCTCAACTGTGGGCCGGCATGTTTGGGCTGGGCCTCCACATTCGGCCGATTTGGGCTGTGCCTCTACTGTGGGCCGGCCGATTTGGGCTTCCACAGTCGGCCGATTTGAAATGGGCCTCCACTGTGGCCCAATTGGGCCTTCCCACTATGGGCCGATTTGGGCCTCCATTACGGGCCGGCCGATTTTGGGCTCCCACTGTGGGTGGATTCGGCCTCCACTATGGGCCAATTTGGGCTTCCACTATGGGCCGACTTTGGGCCTCCACTGTGAGCCGGCCGATTTGGGCTTTCACTGTGGGCCGATTTTTGAACTGGGCCTCTCCTGTGGGCCGATTTGGGCCTCCACTATGGGCTGA

Protein sequence

MGPIWYSTVGRFGLPLSANSGYHCGPADLGLHSGPADFGFHYGPVWASTVGRPISASTMGRFRLPLCADLGFHYGADFGFHYAPIWASTMEPICAGPPLYAGRFGPQLWAGRLGRASTVGRLIWASTVGRHVWAGPPHSADLGCASTVGRPIWASTVGRFEMGLHCGPIGPSHYGPIWASITGRPILGSHCGWIRPPLWANLGFHYGPTLGLHCEPADLGFHCGPIFELGLSCGPIWASTMG
Homology
BLAST of Csor.00g017350 vs. NCBI nr
Match: KAG6583325.1 (hypothetical protein SDJN03_19257, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 545 bits (1404), Expect = 1.51e-196
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0

Query: 1   MGPIWYSTVGRFGLPLSANSGYHCGPADLGLHSGPADFGFHYGPVWASTVGRPISASTMG 60
           MGPIWYSTVGRFGLPLSANSGYHCGPADLGLHSGPADFGFHYGPVWASTVGRPISASTMG
Sbjct: 1   MGPIWYSTVGRFGLPLSANSGYHCGPADLGLHSGPADFGFHYGPVWASTVGRPISASTMG 60

Query: 61  RFRLPLCADLGFHYGADFGFHYAPIWASTMEPICAGPPLYAGRFGPQLWAGRLGRASTVG 120
           RFRLPLCADLGFHYGADFGFHYAPIWASTMEPICAGPPLYAGRFGPQLWAGRLGRASTVG
Sbjct: 61  RFRLPLCADLGFHYGADFGFHYAPIWASTMEPICAGPPLYAGRFGPQLWAGRLGRASTVG 120

Query: 121 RLIWASTVGRHVWAGPPHSADLGCASTVGRPIWASTVGRFEMGLHCGPIGPSHYGPIWAS 180
           RLIWASTVGRHVWAGPPHSADLGCASTVGRPIWASTVGRFEMGLHCGPIGPSHYGPIWAS
Sbjct: 121 RLIWASTVGRHVWAGPPHSADLGCASTVGRPIWASTVGRFEMGLHCGPIGPSHYGPIWAS 180

Query: 181 ITGRPILGSHCGWIRPPLWANLGFHYGPTLGLHCEPADLGFHCGPIFELGLSCGPIWAST 240
           ITGRPILGSHCGWIRPPLWANLGFHYGPTLGLHCEPADLGFHCGPIFELGLSCGPIWAST
Sbjct: 181 ITGRPILGSHCGWIRPPLWANLGFHYGPTLGLHCEPADLGFHCGPIFELGLSCGPIWAST 240

Query: 241 MG 242
           MG
Sbjct: 241 MG 242

BLAST of Csor.00g017350 vs. NCBI nr
Match: KAG6583352.1 (hypothetical protein SDJN03_19284, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126 bits (317), Expect = 3.89e-31
Identity = 107/278 (38.49%), Postives = 121/278 (43.53%), Query Frame = 0

Query: 29  LGLHSGPADFGFHYGPVWASTVGR------PISASTM--------GRFRLPLCADLGFHY 88
            GL S P +FG HYG +WAST+ R      PI  ST+        GRF LPLCA LG H 
Sbjct: 4   FGLQSWP-NFGIHYGSLWASTIVRFGLPLRPIWVSTLHRFGLPRWGRFGLPLCAILGLHC 63

Query: 89  G-ADFGFHYAPI----------WASTMEPICAGPPLYAGRFGPQLWAGRLGRASTVGRLI 148
             AD G H AP              T++ I  GPPL  G+FG       L     +G  I
Sbjct: 64  RPADLGHHCAPANFGLHSGSADLRLTVDRI--GPPLSPGQFGLHCGPTNL---CGIGLPI 123

Query: 149 WASTVGRHVWAGPPHSADLGCASTVGRPIWASTVGRFEMGLHCGP------IGPS----- 208
           WA     H  A   H          G PIW ST+GR  +GLHCG        GPS     
Sbjct: 124 WA-----HYAALGLHCGADKFGPRAGPPIWVSTMGRLILGLHCGSPHFGPRCGPSDLALH 183

Query: 209 ---------------HYGPIWASITGRPI---LGSHCGW----IRPPLWANLGFHYGPTL 242
                           Y PIWAS  G  I   LG  CG       PPLWA     +GP  
Sbjct: 184 CGPPNLVGIGLPLWAQYVPIWASNVGHLISAELGFLCGLSMCRFEPPLWAG---EFGPR- 243

BLAST of Csor.00g017350 vs. NCBI nr
Match: KAG6583398.1 (hypothetical protein SDJN03_19330, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125 bits (314), Expect = 9.82e-31
Identity = 103/284 (36.27%), Postives = 123/284 (43.31%), Query Frame = 0

Query: 9   VGRFGLPLSANSGYHCGP---ADLGLHSGP--ADFGFHYGPVWASTVGRPISASTMGRFR 68
           +GR GLP+ A+ G+H GP   + +G +  P  AD  F YGP WAST+GR +  S MGRF 
Sbjct: 1   MGRHGLPIWADMGFHYGPIWASTMGRYGLPLWADIDFKYGPTWASTMGR-LGLSLMGRFG 60

Query: 69  LPLCADLGFHYGADFGFHYAPIWASTMEPICAGPPLYAGRFGPQLWAGRLGRASTVGRLI 128
           L           A+ GFHY P+ AST                  LWA      S  G  +
Sbjct: 61  LQYGPKWASTLWAEMGFHYGPVRAST------------------LWAEWASTMSRPGLPL 120

Query: 129 WASTVGRHVWAGPPHSADLGCASTVGRPIWASTVGRFEMGLHCGPIGPSHYGPIWASITG 188
           WA   GR    G P  ADLG     G P+WA      ++GL+        YGP WA   G
Sbjct: 121 WAD--GR---LGLPLWADLGLP---GLPLWA------DLGLY--------YGPTWAYTMG 180

Query: 189 R------PILGSHCGWIRPPLWANLGFHYGPT-------LGLHCEP-------------- 242
           R        LG H G  R PLWA+LG +YGPT       LG H  P              
Sbjct: 181 RHGLILWADLGFHYGTTRLPLWADLGLYYGPTWAYTMAYLGFHDGPTWASTMGIPGLHDG 240

BLAST of Csor.00g017350 vs. NCBI nr
Match: KAG6583374.1 (hypothetical protein SDJN03_19306, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108 bits (271), Expect = 2.65e-25
Identity = 94/257 (36.58%), Postives = 110/257 (42.80%), Query Frame = 0

Query: 2   GPIWYSTVGRFGLPLSANSGYHCGP---ADLGLHSGPADFGFHYGPVWASTVGRPISAST 61
           GP W S +  FG P+ A  G+  G    AD+GL       GFH+G +WA        AST
Sbjct: 6   GPRWASNMAIFGFPIWACLGFVYGLPLWADMGL-------GFHFGLIWAC-------AST 65

Query: 62  MGRF--RLPLCADL---------GFHYGADFGFHYAPIWASTMEPICAGPPLYAGRFGPQ 121
           M RF   LP+  DL         G    AD GFH+ PIWA           L   R G Q
Sbjct: 66  MDRFWLGLPVWPDLAWASTMGLFGLQSWADLGFHHGPIWA-----------LVVNRSGLQ 125

Query: 122 LWAGRLGRASTVGRLIWASTVGRHVWAGPPHSADLGCASTVGRPIWASTVGRFEMGLHCG 181
           LWA           L++             H            PIWAST+GRF  GLH  
Sbjct: 126 LWA----------YLVF-------------HYG----------PIWASTMGRF--GLHSW 185

Query: 182 PIGPSHYGPIWASITGRPILGSHCGWIRPPLWANLGFHYGPTLGLHCEPADLGFHCG--P 241
                HYGPIWAS+  R  L          LWA L FHYGP        A + F+ G  P
Sbjct: 186 ADMGFHYGPIWASLVNRSGL---------QLWAYLVFHYGPIW------ASMMFNFGLSP 187

BLAST of Csor.00g017350 vs. NCBI nr
Match: KAG6583441.1 (hypothetical protein SDJN03_19373, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 1.16e-19
Identity = 62/140 (44.29%), Postives = 70/140 (50.00%), Query Frame = 0

Query: 2   GPIWYSTVGRFGLPLSANSGYHCGP---ADLGLHSGP----------ADFGFHYGPVWAS 61
           GPI+  T GRFG PL A+ G+H GP   + +G +  P          A FGFHYGP+W S
Sbjct: 126 GPIFACTYGRFGPPLVADMGFHYGPRWSSTMGRNGLPPMGRHGLQLWAPFGFHYGPIWVS 185

Query: 62  TVGRP------------------ISASTMGRFRLPLCADLGFHYGADFGFHYAPIWASTM 110
           T+ R                    SASTMGR  LP  ADLGFH  AD GF Y P  AST 
Sbjct: 186 TMRRLRLLPWADMGFHLRADLGLTSASTMGRLELPQWADLGFHLRADLGFPYGPTRASTY 245

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6583325.11.51e-196100.00hypothetical protein SDJN03_19257, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583352.13.89e-3138.49hypothetical protein SDJN03_19284, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583398.19.82e-3136.27hypothetical protein SDJN03_19330, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583374.12.65e-2536.58hypothetical protein SDJN03_19306, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583441.11.16e-1944.29hypothetical protein SDJN03_19373, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g017350.m01Csor.00g017350.m01mRNA