Csor.00g017320 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g017320
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description28S ribosomal protein S29, mitochondrial
LocationCsor_Chr13: 175548 .. 176780 (-)
RNA-Seq ExpressionCsor.00g017320
SyntenyCsor.00g017320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCAGGATGGCATGATGGTTGGTGCTTTATCCCATTCAACTGCTGTAGGAAAGTTGCTTCAAGACTTGCCAGATGTTCCTCTAGGTGCACGTGTTAATTTCCCTTGCTATAGTCTAGATGAAGCGGCTTCTGTTTTCCAATTTCCAGTACTACCACAGGTATGCTTATATTGTTGTTATTTTGTTTGGTGAAGGATTTAGATTATGCCCCAATTTGGATATTAGAGGAAATAAGAGTTTTAAGGAGTTAGCTGTCTTAACGTTGTAAAATCTCATAAAATAAAGAAGGTGGTATTGACTTAATGATACTAGATGAACTAGACTTGTTAATTAGAGGGACCCAACAAACTTTGGAGAGTCTTGCAGGTCTAGATTCCTACAAACTAGTTAAAGGCGTCTGGAAATTTCTCCTGTACGCTCCTAGTATGAGAATTGTAATAGCCTCAACCCACCGCTAGCAGATATTGTCCTCTTTGAACTTATCCTTTTAGACTTCCCTTCTAGTTTTTTAAAACGTGTTTGCTAGGGAGAGGTTTCCACCCTCTCATAAAGAAAGTTTTGTTTCCCTCTTCAGCCGACGTGGGATCTCACAATTCACCCCCTTCGGGGCCAGTGTCCTCACTGACACACCGTCCAATGTCTACCCCCCTTGTGGCTCAACGTCTTCACTGGCACACTGTTAGCGGTGTCTGGCCCTAATACCATTTGTAACAGTCTAAACCCACAACTAGTAGATATTGTCCTCTTTGGATTTTCCTCTCCAACCGATGTAGGATCTCACAAGAACAATGGACAAAACAAGGGACCGTGATTTATCTCCATGTGCGTAGTGGGTTGGATATCTTTTCGGAACCACATATTTGTATTAGTTTTCTAGTCGATTTTATTTTATTTTTTAGAAAACATAAAAGATTGTACAAATGAGCATATAAAATTTAGTTTTTTAGGCACAGCAGAATTCATAATACCAATAAGTTGCTGCGGTGCAGTTGTCAACTTACTGTCGTTGAGGTGACCCAAGCGCTCGCCTATGGTGAGAGGCGAGGCTACCTGAGGCCTTTGCGCCTTGTAACCAGCTGGGGCGAGCGACTTCAATCAGGCACTTGCCCCACTGCACGCAGTGCAAGGCGTTCACCCCCTTGTGATCATGCAAAAATCAAAACAGAAAAAATGAAGCTTCTCCGTGACTCGATTATTATTGGAATGAGTAATGTTCTTGTACGGCATTGA

mRNA sequence

ATGATGCAGGATGGCATGATGGTTGGTGCTTTATCCCATTCAACTGCTGTAGGAAAGTTGCTTCAAGACTTGCCAGATGTTCCTCTAGGTGCACGTGTTAATTTCCCTTGCTATAGTCTAGATGAAGCGGCTTCTGTTTTCCAATTTCCAGTACTACCACAGGTGACCCAAGCGCTCGCCTATGGTGAGAGGCGAGGCTACCTGAGGCCTTTGCGCCTTGTAACCAGCTGGGGCGAGCGACTTCAATCAGGCACTTGCCCCACTGCACGCAGTGCAAGGCGTTCACCCCCTTGTGATCATGCAAAAATCAAAACAGAAAAAATGAAGCTTCTCCGTGACTCGATTATTATTGGAATGAGTAATGTTCTTGTACGGCATTGA

Coding sequence (CDS)

ATGATGCAGGATGGCATGATGGTTGGTGCTTTATCCCATTCAACTGCTGTAGGAAAGTTGCTTCAAGACTTGCCAGATGTTCCTCTAGGTGCACGTGTTAATTTCCCTTGCTATAGTCTAGATGAAGCGGCTTCTGTTTTCCAATTTCCAGTACTACCACAGGTGACCCAAGCGCTCGCCTATGGTGAGAGGCGAGGCTACCTGAGGCCTTTGCGCCTTGTAACCAGCTGGGGCGAGCGACTTCAATCAGGCACTTGCCCCACTGCACGCAGTGCAAGGCGTTCACCCCCTTGTGATCATGCAAAAATCAAAACAGAAAAAATGAAGCTTCTCCGTGACTCGATTATTATTGGAATGAGTAATGTTCTTGTACGGCATTGA

Protein sequence

MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALAYGERRGYLRPLRLVTSWGERLQSGTCPTARSARRSPPCDHAKIKTEKMKLLRDSIIIGMSNVLVRH
Homology
[Close]
BLAST of Csor.00g017320 vs. NCBI nr
Match: KAG6583328.1 (hypothetical protein SDJN03_19260, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255 bits (652), Expect = 1.05e-85
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA 60
           MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA
Sbjct: 1   MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA 60

Query: 61  YGERRGYLRPLRLVTSWGERLQSGTCPTARSARRSPPCDHAKIKTEKMKLLRDSIIIGMS 120
           YGERRGYLRPLRLVTSWGERLQSGTCPTARSARRSPPCDHAKIKTEKMKLLRDSIIIGMS
Sbjct: 61  YGERRGYLRPLRLVTSWGERLQSGTCPTARSARRSPPCDHAKIKTEKMKLLRDSIIIGMS 120

Query: 121 NVLVRH 126
           NVLVRH
Sbjct: 121 NVLVRH 126

[Close]
BLAST of Csor.00g017320 vs. NCBI nr
Match: XP_008457304.1 (PREDICTED: 28S ribosomal protein S29, mitochondrial [Cucumis melo] >KAA0059987.1 28S ribosomal protein S29 [Cucumis melo var. makuwa] >TYJ97246.1 28S ribosomal protein S29 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 3.56e-17
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA 60
           MM D MMVGA SHSTAVGKL QDLPDVPLGARVNFP YSLDEAASVF + +  ++ +  A
Sbjct: 367 MMHDDMMVGAFSHSTAVGKLRQDLPDVPLGARVNFPRYSLDEAASVFHYYLRQRLIRREA 426

Query: 61  YGE 63
           + E
Sbjct: 427 FSE 429

[Close]
BLAST of Csor.00g017320 vs. NCBI nr
Match: XP_011657272.1 (28S ribosomal protein S29, mitochondrial [Cucumis sativus] >KGN47392.1 hypothetical protein Csa_023053 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 3.57e-17
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA 60
           MM D MMVGA SHSTAVGKL QDLPDVPLGARVNFP YSLDEAASVF + +  ++ +  A
Sbjct: 368 MMHDDMMVGAFSHSTAVGKLRQDLPDVPLGARVNFPRYSLDEAASVFHYYLRQRLIRREA 427

Query: 61  YGE 63
           + E
Sbjct: 428 FSE 430

[Close]
BLAST of Csor.00g017320 vs. NCBI nr
Match: XP_004145300.3 (28S ribosomal protein S29, mitochondrial [Cucumis sativus] >KAE8653293.1 hypothetical protein Csa_023268 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 3.57e-17
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA 60
           MM D MMVGA SHSTAVGKL QDLPDVPLGARVNFP YSLDEAASVF + +  ++ +  A
Sbjct: 368 MMHDDMMVGAFSHSTAVGKLRQDLPDVPLGARVNFPRYSLDEAASVFHYYLRQRLIRREA 427

Query: 61  YGE 63
           + E
Sbjct: 428 FSE 430

[Close]
BLAST of Csor.00g017320 vs. NCBI nr
Match: KAG7037027.1 (28S ribosomal protein S29, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.3 bits (212), Expect = 9.24e-17
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA 60
           MM D MMVGA SHSTAVGKL QDLPDVPLGARVNFP Y+LDEAASVF + +  ++ +  A
Sbjct: 369 MMHDDMMVGAFSHSTAVGKLRQDLPDVPLGARVNFPRYNLDEAASVFHYYLRQRLIRREA 428

Query: 61  YGE 63
           + E
Sbjct: 429 FSE 431

[Close]
BLAST of Csor.00g017320 vs. ExPASy TrEMBL
Match: A0A5A7UZA8 (28S ribosomal protein S29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00370 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.72e-17
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA 60
           MM D MMVGA SHSTAVGKL QDLPDVPLGARVNFP YSLDEAASVF + +  ++ +  A
Sbjct: 367 MMHDDMMVGAFSHSTAVGKLRQDLPDVPLGARVNFPRYSLDEAASVFHYYLRQRLIRREA 426

Query: 61  YGE 63
           + E
Sbjct: 427 FSE 429

[Close]
BLAST of Csor.00g017320 vs. ExPASy TrEMBL
Match: A0A1S3C6G8 (28S ribosomal protein S29, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497026 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.72e-17
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA 60
           MM D MMVGA SHSTAVGKL QDLPDVPLGARVNFP YSLDEAASVF + +  ++ +  A
Sbjct: 367 MMHDDMMVGAFSHSTAVGKLRQDLPDVPLGARVNFPRYSLDEAASVFHYYLRQRLIRREA 426

Query: 61  YGE 63
           + E
Sbjct: 427 FSE 429

[Close]
BLAST of Csor.00g017320 vs. ExPASy TrEMBL
Match: A0A0A0LVC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533720 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.73e-17
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA 60
           MM D MMVGA SHSTAVGKL QDLPDVPLGARVNFP YSLDEAASVF + +  ++ +  A
Sbjct: 368 MMHDDMMVGAFSHSTAVGKLRQDLPDVPLGARVNFPRYSLDEAASVFHYYLRQRLIRREA 427

Query: 61  YGE 63
           + E
Sbjct: 428 FSE 430

[Close]
BLAST of Csor.00g017320 vs. ExPASy TrEMBL
Match: A0A0A0KG66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G310480 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.73e-17
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA 60
           MM D MMVGA SHSTAVGKL QDLPDVPLGARVNFP YSLDEAASVF + +  ++ +  A
Sbjct: 368 MMHDDMMVGAFSHSTAVGKLRQDLPDVPLGARVNFPRYSLDEAASVFHYYLRQRLIRREA 427

Query: 61  YGE 63
           + E
Sbjct: 428 FSE 430

[Close]
BLAST of Csor.00g017320 vs. ExPASy TrEMBL
Match: A0A6J1GBS0 (uncharacterized protein LOC111452726 OS=Cucurbita moschata OX=3662 GN=LOC111452726 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.49e-17
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA 60
           MM D MMVGA SHSTAVGKL QDLPDVPLGARVNFP Y+LDEAASVF + +  ++ +  A
Sbjct: 370 MMHDDMMVGAFSHSTAVGKLRQDLPDVPLGARVNFPRYNLDEAASVFHYYLRQRLIRREA 429

Query: 61  YGE 63
           + E
Sbjct: 430 FSE 432

[Close]
BLAST of Csor.00g017320 vs. TAIR 10
Match: AT1G16870.1 (mitochondrial 28S ribosomal protein S29-related )

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-12
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 1   MMQDGMMVGALSHSTAVGKLLQDLPDVPLGARVNFPCYSLDEAASVFQFPVLPQVTQALA 60
           MM + MMVGA SHSTAVGKL +DLPDVP+ AR  FP YSLDEA +V  + +  ++ +   
Sbjct: 393 MMHEDMMVGAFSHSTAVGKLRKDLPDVPVDARQQFPRYSLDEAEAVCYYYLRQRLVRREV 452

Query: 61  YGE 64
           + E
Sbjct: 453 FNE 455

The following BLAST results are available for this feature:
BLAST of Csor.00g017320 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g017320 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583328.11.05e-85100.00hypothetical protein SDJN03_19260, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008457304.13.56e-1769.84PREDICTED: 28S ribosomal protein S29, mitochondrial [Cucumis melo] >KAA0059987.1... [more]
XP_011657272.13.57e-1769.8428S ribosomal protein S29, mitochondrial [Cucumis sativus] >KGN47392.1 hypotheti... [more]
XP_004145300.33.57e-1769.8428S ribosomal protein S29, mitochondrial [Cucumis sativus] >KAE8653293.1 hypothe... [more]
KAG7037027.19.24e-1768.2528S ribosomal protein S29, mitochondrial [Cucurbita argyrosperma subsp. argyrosp... [more]
BLAST of Csor.00g017320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UZA81.72e-1769.8428S ribosomal protein S29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3C6G81.72e-1769.8428S ribosomal protein S29, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497026... [more]
A0A0A0LVC21.73e-1769.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533720 PE=3 SV=1[more]
A0A0A0KG661.73e-1769.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G310480 PE=3 SV=1[more]
A0A6J1GBS04.49e-1768.25uncharacterized protein LOC111452726 OS=Cucurbita moschata OX=3662 GN=LOC1114527... [more]
BLAST of Csor.00g017320 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G16870.13.2e-1253.97mitochondrial 28S ribosomal protein S29-related [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g017320.m01Csor.00g017320.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005763 mitochondrial small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome