Csor.00g016860 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g016860
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr13: 409621 .. 410052 (+)
RNA-Seq ExpressionCsor.00g016860
SyntenyCsor.00g016860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTTCCACAGTCGGCCTACATGGGCTTTCACTATGGGCCGTCTTGGGCTTCCACTGTGGGCCAACTCGGGTCTCCCTGTGGGCCTACATGGGCTTCCACGGAGGGGTCGTTTTGGGCTTCCACTGTGGGCCGACTTGGGCTTCCACAGTGACCGACCGGGGCTTCCATTATGGGCCCACTTGGGCTTCTACTGTAGACCGGCATGGGCTTCCACTGTGGGCCGACTTACTGTCGCCCGACTTGGGCTTCCACAGTGGGCCGACCGGGGCTTCCAAAATGGCAGATTCGGGCTTCATAGTGGGCCGACTTGGGCTTTTCATATGGGCCGACGTGGGCTTCCAATGTGGGCCGACCTGTGCTTCCGGGCCGACCTGGCTTCCAATGTGGGCCGACATGGGCTCACCGTTTGCCAACCTGGGCTTCCATAG

mRNA sequence

ATGAGCTTCCACAGTCGGCCTACATGGGCTTTCACTATGGGCCGTCTTGGGCTTCCACTGTGGGCCAACTCGGGTCTCCCTGTGGGCCTACATGGGCTTCCACGGAGGGGTCGTTTTGGGCTTCCACTGTGGGCCGACTTGGGCTTCCACAGTGACCGACCGGGGCTTCCATTATGGGCCCACTTGGGCTTCTACTGTAGACCGGCATGGGCTTCCACTGTGGGCCGACTTACTGTCGCCCGACTTGGGCTTCCACAGTGGGCCGACCGGGGCTTCCAAAATGGCAGATTCGGGCTTCATAGTGGGCCGACTTGGGCTTTTCATATGGGCCGACGTGGGCTTCCAATGTGGGCCGACCTGTGCTTCCGGGCCGACCTGGCTTCCAATGTGGGCCGACATGGGCTCACCGTTTGCCAACCTGGGCTTCCATAG

Coding sequence (CDS)

ATGAGCTTCCACAGTCGGCCTACATGGGCTTTCACTATGGGCCGTCTTGGGCTTCCACTGTGGGCCAACTCGGGTCTCCCTGTGGGCCTACATGGGCTTCCACGGAGGGGTCGTTTTGGGCTTCCACTGTGGGCCGACTTGGGCTTCCACAGTGACCGACCGGGGCTTCCATTATGGGCCCACTTGGGCTTCTACTGTAGACCGGCATGGGCTTCCACTGTGGGCCGACTTACTGTCGCCCGACTTGGGCTTCCACAGTGGGCCGACCGGGGCTTCCAAAATGGCAGATTCGGGCTTCATAGTGGGCCGACTTGGGCTTTTCATATGGGCCGACGTGGGCTTCCAATGTGGGCCGACCTGTGCTTCCGGGCCGACCTGGCTTCCAATGTGGGCCGACATGGGCTCACCGTTTGCCAACCTGGGCTTCCATAG

Protein sequence

MSFHSRPTWAFTMGRLGLPLWANSGLPVGLHGLPRRGRFGLPLWADLGFHSDRPGLPLWAHLGFYCRPAWASTVGRLTVARLGLPQWADRGFQNGRFGLHSGPTWAFHMGRRGLPMWADLCFRADLASNVGRHGLTVCQPGLP
Homology
BLAST of Csor.00g016860 vs. NCBI nr
Match: KAG6583373.1 (hypothetical protein SDJN03_19305, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 320 bits (821), Expect = 6.24e-111
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0

Query: 1   MSFHSRPTWAFTMGRLGLPLWANSGLPVGLHGLPRRGRFGLPLWADLGFHSDRPGLPLWA 60
           MSFHSRPTWAFTMGRLGLPLWANSGLPVGLHGLPRRGRFGLPLWADLGFHSDRPGLPLWA
Sbjct: 1   MSFHSRPTWAFTMGRLGLPLWANSGLPVGLHGLPRRGRFGLPLWADLGFHSDRPGLPLWA 60

Query: 61  HLGFYCRPAWASTVGRLTVARLGLPQWADRGFQNGRFGLHSGPTWAFHMGRRGLPMWADL 120
           HLGFYCRPAWASTVGRLTVARLGLPQWADRGFQNGRFGLHSGPTWAFHMGRRGLPMWADL
Sbjct: 61  HLGFYCRPAWASTVGRLTVARLGLPQWADRGFQNGRFGLHSGPTWAFHMGRRGLPMWADL 120

Query: 121 CFRADLASNVGRHGLTVCQPGLP 143
           CFRADLASNVGRHGLTVCQPGLP
Sbjct: 121 CFRADLASNVGRHGLTVCQPGLP 143

BLAST of Csor.00g016860 vs. NCBI nr
Match: KAG6583398.1 (hypothetical protein SDJN03_19330, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104 bits (260), Expect = 3.88e-24
Identity = 74/176 (42.05%), Postives = 81/176 (46.02%), Query Frame = 0

Query: 1   MSFHSRPT--------WAFTMGRLGLPLWANSGLPVGLHGLPRRGRFGLPLWADLGFHSD 60
           M FH  P         WA TM R GLPLWA+             GR GLPLWADLG    
Sbjct: 74  MGFHYGPVRASTLWAEWASTMSRPGLPLWAD-------------GRLGLPLWADLGL--- 133

Query: 61  RPGLPLWAHLGFYCRPAWASTVGR---LTVARLG-------LPQWADRGFQNGR------ 120
            PGLPLWA LG Y  P WA T+GR   +  A LG       LP WAD G   G       
Sbjct: 134 -PGLPLWADLGLYYGPTWAYTMGRHGLILWADLGFHYGTTRLPLWADLGLYYGPTWAYTM 193

Query: 121 --FGLHSGPTWAFHMGRRGL---PMWADLCFRADLASNVGRH-----GLTVCQPGL 142
              G H GPTWA  MG  GL   P WAD      L +++G H       T+  PGL
Sbjct: 194 AYLGFHDGPTWASTMGIPGLHDGPSWADSLLGLPLCADMGFHYGPSWASTMGLPGL 232

BLAST of Csor.00g016860 vs. NCBI nr
Match: KAG6583441.1 (hypothetical protein SDJN03_19373, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 2.39e-21
Identity = 64/149 (42.95%), Postives = 75/149 (50.34%), Query Frame = 0

Query: 1   MSFHSRPTWAFTMGRLGLPLWANSGLPVGLHGLPRRGRFGLPLWADLGFHSD-------- 60
           + FH  PTWA T G  G     +    +G   LP  GRFGLPLWAD+GFH          
Sbjct: 75  LDFHHGPTWASTYGPTGFHNRLSWAFTMGGVRLPSTGRFGLPLWADMGFHYGPIFACTYG 134

Query: 61  RPGLPLWAHLGFYCRPAWASTVGRL---TVARLGLPQWADRGFQNGRFGLHSGPTWAFHM 120
           R G PL A +GF+  P W+ST+GR     + R GL  WA        FG H GP W   M
Sbjct: 135 RFGPPLVADMGFHYGPRWSSTMGRNGLPPMGRHGLQLWAP-------FGFHYGPIWVSTM 194

Query: 121 GRRGLPMWADLCF--RADL----ASNVGR 132
            R  L  WAD+ F  RADL    AS +GR
Sbjct: 195 RRLRLLPWADMGFHLRADLGLTSASTMGR 216

BLAST of Csor.00g016860 vs. NCBI nr
Match: KAG6583374.1 (hypothetical protein SDJN03_19306, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 8.17e-18
Identity = 52/122 (42.62%), Postives = 59/122 (48.36%), Query Frame = 0

Query: 1   MSFHSRPTWAFTMGRLGLPLWANSGLPVGLHGLPRRGRFGLPLWADLGFHS--------D 60
           + FH  P WA  + R GL LWA      G       GRFGL  WAD+GFH         +
Sbjct: 82  LGFHHGPIWALVVNRSGLQLWAYLVFHYGPIWASTMGRFGLHSWADMGFHYGPIWASLVN 141

Query: 61  RPGLPLWAHLGFYCRPAWASTVGRLTVARLGLPQWADRGFQNGRFGLHSGPTWAFHMGRR 114
           R GL LWA+L F+  P WAS      +   GL  WAD GF  G       PTWA  MGR 
Sbjct: 142 RSGLQLWAYLVFHYGPIWASM-----MFNFGLSPWADLGFTRG-------PTWASTMGRF 191

BLAST of Csor.00g016860 vs. NCBI nr
Match: KAG6583443.1 (hypothetical protein SDJN03_19375, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 6.27e-16
Identity = 51/121 (42.15%), Postives = 62/121 (51.24%), Query Frame = 0

Query: 3   FHSRPTWAFTMGRLGLPLWANSGLPVGLHGLPRRGRFGLPLWADLGFHSDRP-------- 62
           FH+ P+WA TMGR+ LP +   G  +G    P       P W+   FH + P        
Sbjct: 14  FHNGPSWASTMGRVRLPQYETFGFYLG----PPWASTYEPTWS---FHYEPPWASTMGLL 73

Query: 63  GLPLWAHLGFYCRPAWASTVGRLTVARLGLPQWADRGFQNGRFGLHSGPTWAFHMGRRGL 115
           GLPLWA LGF+  P WAST+GRL     GLP  A+ GF       H  P WA  MG+ GL
Sbjct: 74  GLPLWADLGFHYGPTWASTMGRL-----GLPLRAESGF-------HYEPNWASIMGQHGL 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6583373.16.24e-111100.00hypothetical protein SDJN03_19305, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583398.13.88e-2442.05hypothetical protein SDJN03_19330, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583441.12.39e-2142.95hypothetical protein SDJN03_19373, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583374.18.17e-1842.62hypothetical protein SDJN03_19306, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583443.16.27e-1642.15hypothetical protein SDJN03_19375, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g016860.m01Csor.00g016860.m01mRNA