Csor.00g016550 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g016550
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Csor_Chr13: 579027 .. 581697 (-)
RNA-Seq Expression	Csor.00g016550
Synteny	Csor.00g016550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGCGGTGGTTTTCCAAGTCGAAGTTACCCATTTGTTATTCGGTATTCCTACGAGGTCTAATGAGGAGACCCATTAGAGATATCCCATTACCAGTAAAATCGACGGTTGCCGGATTTCAGCCGGATTCCAGCCGACCCTTAAGCGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGACTGAAGAGATTCAAGGAAGATGAAGAGAAGCTCCAGAAGTTCATGAAATGTCATGTTTTGAGGCTCTTGAAATTGGACATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCCGTCAAGGTCTCTTTTCCCTTCCTTTTCTTCATTATGTTCTGTCATTTTTTGGGTTTTTAACTTTACTTCATGAGGTGCCATGGAAATAGATAACGAGCTTCTGCAAAATATACTTAATATTCCTGACTTGCTCTTGTTTGTTGTCACTATTACTTTCAATAACCTTGTTGGTTAATGCTTTGAATTTTTGCTTCTTAATTGTTATGTTCATCTCTGATCTTCCCCTTTTGATTCATCAGGGTCTTCTTCATATATATATATATATATATGATTTAAGATCTTGTATATGAACCCTTTTCCTATCTAGTTGCTTGTGGAAAATATGTTGTGAGATCCCACCTCGGTTGGGGAGGAGAATGAAGCATTCTTTATAAGGGTGTGGAAACCTTTCCCTAGCAGAAATCTTGAGGAGAAGCCCGAAAGGGAAAGCCCAAAAAGGACAATATTTGCTAGGAGTGGGGTTGGGTTGGGTTGTTACAAATAATATCAAAGCTAGACATCGGGCAATGTGCCAACAAGGACGCTAGGACTTGAAGGGGGTTGACATGAGGCGGTGTGCTAGCTAGGACGTTGGGCCTCGAATGGGGGTTGATTGGAAGCTCCACATCGATTGGAGAAAGGAACAAGTGTCAGCGAGGACGCTGGGCCTCAAAGGGTGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAAAACGAAACATTCTTTATAAGGACGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGGAAGCCCGAAAGGGAAAGCCCAAGGAGGATGTGCCAGCAAGGAGGCTGAGCTCTGAAGGGGGGTGGACATGAGGCGGTGTGTTAGCTAGGACGTTGGGCCCTGAATAGGGGTGGATTAGGGGTTCCACATCGATTGGAGAAAGGAACGAGTGCCAGCGAGGATGCTGGACCTCGAAGGGTGGTGGATTGTGAGATCTCACATCGGTTGGGGAGGAGAACGGAACATTTTTTATGAGGATGTGGAAACCTCTCCCTAGAAAACGCGTTTTAAAAACCTTGAGGGAAACCTAGAAGGGAAAGCCCAAAGAGGACAATATTTGCTAGCTATGGGTTCGGGCTATTACATATTTGCTGTTAGATTCTCTTACTTCATTGTTTCGGGGAATCTGACCTGCTGCAATTTTCTATTGTCATTATGTTTGCTCGCCTTGTACGCTTGTCGAACTTTCAGGTATTTCGGTTGATTCAAAAGCAAGAATGGTACAAGCCCGATGTTTTTCTCTACAAAGACTTGATTGTTGCATTAGCTAGAAGTAAACAGATGGATGATGCAATGGAATTATGGGAAAGCATGAGAAAGGAGAATTTATTCCCTGATTCTCAAACGTACACCGAAGTCATCAGAGGCTTCTTGAAATATGGATCTCCTTCTGATGCAATGAACATATATGAAGATATGAAGAAGTCTCCTGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTGCAGCAAGATTTCGAGGAGATCTTTCCTGACCAGCACGTGTATGATCCCCCGGAAGAGATATTCGGCCTACGCTGAGGTATGTTTTATTAACGTTGCGTTGTTGCTGGTATTATCTGAAGATTGATAGCACTTAGTAGGCATTCGTAGTCGGCCATTGATGTCATTAAAGAATGACCAAAACATGTCTTCGAATTAGCGGTCAAGAAGTGTAGGATGAATAGTTGGTCAGATATCCGTACGAGTCATGTGGATAATAGTTGAGTTCGAGCCAAGAAATCTCTTCCTCTCGTATGGTTTGCTCATCTTAGATATGTGGAGAAGGGGATCAAGTGAGTCATGTCATCCTTGTAAACAGGAAAATTCATAGACCATTCCCGTCGTCGTAAGATCACCCCTTGGATGTGTTAAATATTTAGGGGTCACGAACCAACGATCAAATCCTGTTCGATAAGTGGAATGCATTGGTTGTCCACACTTTTGTGGGGTCGGTAGGTTCGTTTGGAAGAGTACACCATTGTTATTAGAAAGCCTTTGAAAGACCTTTAGCCCTTCAACGTCAGATGCTTGTTCATGTTAGTTCACTGCTGCTAACTAGTTTAGCCCTTTCTCTTTCGTGGTTACGACTTCATTTTAATCTGATTACGTCGTATTACACATCATTTCAGTGAATTAATAGGACGTTTTGTCGGAGAACATTACTCTGGTTTTGTGATGTTTCCTGCTGCTGGAGCTGAAAGCAAAACGACGAAGCGTGACGATACGAAACTGCAATGA

mRNA sequence

ATGGCAATGCGGTGGTTTTCCAAGTCGAAGTTACCCATTTGTTATTCGGTATTCCTACGAGGTCTAATGAGGAGACCCATTAGAGATATCCCATTACCAGTAAAATCGACGGTTGCCGGATTTCAGCCGGATTCCAGCCGACCCTTAAGCGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGACTGAAGAGATTCAAGGAAGATGAAGAGAAGCTCCAGAAGTTCATGAAATGTCATGTTTTGAGGCTCTTGAAATTGGACATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCCGTCAAGGTATTTCGGTTGATTCAAAAGCAAGAATGGTACAAGCCCGATGTTTTTCTCTACAAAGACTTGATTGTTGCATTAGCTAGAAGTAAACAGATGGATGATGCAATGGAATTATGGGAAAGCATGAGAAAGGAGAATTTATTCCCTGATTCTCAAACGTACACCGAAGTCATCAGAGGCTTCTTGAAATATGGATCTCCTTCTGATGCAATGAACATATATGAAGATATGAAGAAGTCTCCTGATCCACCAGATGAGTTGCCATTTAGAATTTTAGATATTCGGCCTACGCTGAGTGAATTAATAGGACGTTTTGTCGGAGAACATTACTCTGGTTTTGTGATGTTTCCTGCTGCTGGAGCTGAAAGCAAAACGACGAAGCGTGACGATACGAAACTGCAATGA

Coding sequence (CDS)

ATGGCAATGCGGTGGTTTTCCAAGTCGAAGTTACCCATTTGTTATTCGGTATTCCTACGAGGTCTAATGAGGAGACCCATTAGAGATATCCCATTACCAGTAAAATCGACGGTTGCCGGATTTCAGCCGGATTCCAGCCGACCCTTAAGCGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGACTGAAGAGATTCAAGGAAGATGAAGAGAAGCTCCAGAAGTTCATGAAATGTCATGTTTTGAGGCTCTTGAAATTGGACATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCCGTCAAGGTATTTCGGTTGATTCAAAAGCAAGAATGGTACAAGCCCGATGTTTTTCTCTACAAAGACTTGATTGTTGCATTAGCTAGAAGTAAACAGATGGATGATGCAATGGAATTATGGGAAAGCATGAGAAAGGAGAATTTATTCCCTGATTCTCAAACGTACACCGAAGTCATCAGAGGCTTCTTGAAATATGGATCTCCTTCTGATGCAATGAACATATATGAAGATATGAAGAAGTCTCCTGATCCACCAGATGAGTTGCCATTTAGAATTTTAGATATTCGGCCTACGCTGAGTGAATTAATAGGACGTTTTGTCGGAGAACATTACTCTGGTTTTGTGATGTTTCCTGCTGCTGGAGCTGAAAGCAAAACGACGAAGCGTGACGATACGAAACTGCAATGA

Protein sequence

MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEEVALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYTEVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILDIRPTLSELIGRFVGEHYSGFVMFPAAGAESKTTKRDDTKLQ

Homology

[Close]

BLAST of Csor.00g016550 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 2.0e-74
Identity = 139/210 (66.19%), Postives = 165/210 (78.57%), Query Frame = 0


Query: 10  KLPICYSVFLRGLMRRP-IRDIPLPVKSTVAGFQPDSSRPLSGF-RLYHDGRPRGPLWRS 69
           K P   S+F + + R P I  I            P   +P + F   +HDGRPRGPLWR 
Sbjct: 10  KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGRPRGPLWRG 69

Query: 70  RKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEEVALAVKV 129
           +K IGKEALFVI GLKR KED+EKL KF+K HV RLLKLDM+AV+GELERQEE ALA+K+
Sbjct: 70  KKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAIKM 129

Query: 130 FRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYTEVIRGFL 189
           F +IQKQEWY+PDVF+YKDLIV+LA+SK+MD+AM LWE M+KENLFPDSQTYTEVIRGFL
Sbjct: 130 FEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFL 189

Query: 190 KYGSPSDAMNIYEDMKKSPDPPDELPFRIL 218
           + G P+DAMN+YEDM KSPDPP+ELPFR+L
Sbjct: 190 RDGCPADAMNVYEDMLKSPDPPEELPFRVL 219

[Close]

BLAST of Csor.00g016550 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.2e-31
Identity = 58/147 (39.46%), Postives = 103/147 (70.07%), Query Frame = 0


Query: 71  IGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEEVALAVKVFRL 130
           + KE L   + LKR +    +L +F+  HV RLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYTEVIRGFLKYG 190
           ++++ WY+PD+F Y+D+++ LAR+K++D+  ++WE ++KE +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNIYEDMKKSPDPPDELPFRIL 218
            P +AM +Y +M++SPD P  LPFR++
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVI 147

[Close]

BLAST of Csor.00g016550 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-08
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 124 AVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYTEVI 183
           A++VF L+++Q WYKP+V +Y  LIV L + KQ + A EL++ M  E    + + YT ++
Sbjct: 133 AIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALV 192

Query: 184 RGFLKYGSPSDAMNIYEDMKKSPD-PPDELPFRIL 218
             + + G    A  + E MK S +  PD   + IL
Sbjct: 193 SAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSIL 227

[Close]

BLAST of Csor.00g016550 vs. ExPASy Swiss-Prot
Match: Q76C99 (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-08
Identity = 26/79 (32.91%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 139 PDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYTEVIRGFLKYGSPSDAMNI 198
           PDV  Y  +I AL +++ MD AME+  +M K  + PD  TY  ++ G+   G P +A+  
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 199 YEDMKKSPDPPDELPFRIL 218
            + M+     PD + + +L
Sbjct: 289 LKKMRSDGVEPDVVTYSLL 307

[Close]

BLAST of Csor.00g016550 vs. ExPASy Swiss-Prot
Match: Q9FMD3 (Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16640 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 137 YKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYTEVIRGFLKYGSPSDAM 196
           YKP+V +Y  +I  L +SKQ+D+A++L   M K+ + PD  TY  +I G    G  SDA 
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241

Query: 197 NIYEDMKKSPDPPDELPFRIL 218
            +   M K    PD   F  L
Sbjct: 242 RMVSCMTKREIYPDVFTFNAL 262

[Close]

BLAST of Csor.00g016550 vs. NCBI nr
Match: KAG6583403.1 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 520 bits (1339), Expect = 4.63e-186
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60
           MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILDIRPTLSELIGRFVGEHYSGFVM 240
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILDIRPTLSELIGRFVGEHYSGFVM
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILDIRPTLSELIGRFVGEHYSGFVM 240

Query: 241 FPAAGAESKTTKRDDTKLQ 259
           FPAAGAESKTTKRDDTKLQ
Sbjct: 241 FPAAGAESKTTKRDDTKLQ 259

[Close]

BLAST of Csor.00g016550 vs. NCBI nr
Match: XP_022964699.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964700.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964701.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >KAG7019169.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 434 bits (1116), Expect = 3.90e-152
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60
           MAMRWFSK KLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217

[Close]

BLAST of Csor.00g016550 vs. NCBI nr
Match: XP_023519300.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023519301.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 427 bits (1098), Expect = 2.15e-149
Identity = 213/217 (98.16%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60
           MAMRWFSKSKLPICYSVFLRGL  RPIRDI LPVKSTVAGFQPDSS+PLSGFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217

[Close]

BLAST of Csor.00g016550 vs. NCBI nr
Match: XP_023521051.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522412.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 426 bits (1094), Expect = 8.76e-149
Identity = 212/217 (97.70%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60
           MAMRWFSKSKLPICYSVFLRGL  RPIRDI LPVKSTVAGFQPDSS+PLSGFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMD+AMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDEAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217

[Close]

BLAST of Csor.00g016550 vs. NCBI nr
Match: XP_022970562.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022970563.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022970564.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima])

HSP 1 Score: 423 bits (1088), Expect = 7.19e-148
Identity = 210/217 (96.77%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60
           MAMRWFSKSKLPICYSVFLRGL RRPIRDIPLPVKST+AGF PDSSR LSGFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEW+KPDVF+YKDLIVALARSK+MDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217

[Close]

BLAST of Csor.00g016550 vs. ExPASy TrEMBL
Match: A0A6J1HLK1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464704 PE=4 SV=1)

HSP 1 Score: 434 bits (1116), Expect = 1.89e-152
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60
           MAMRWFSK KLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217

[Close]

BLAST of Csor.00g016550 vs. ExPASy TrEMBL
Match: A0A6J1I496 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469502 PE=4 SV=1)

HSP 1 Score: 423 bits (1088), Expect = 3.48e-148
Identity = 210/217 (96.77%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60
           MAMRWFSKSKLPICYSVFLRGL RRPIRDIPLPVKST+AGF PDSSR LSGFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180
           VALAVKVFRLIQKQEW+KPDVF+YKDLIVALARSK+MDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217
           EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217

[Close]

BLAST of Csor.00g016550 vs. ExPASy TrEMBL
Match: A0A6J1E045 (pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=3673 GN=LOC111024687 PE=4 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 1.07e-135
Identity = 194/217 (89.40%), Postives = 206/217 (94.93%), Query Frame = 0


Query: 1   MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60
           MA+R FS+SKLPI  SVFLRGL RRPIRDIPLPVKS + GFQPDSSRP+ GFR YHDGRP
Sbjct: 1   MAIRGFSRSKLPIFASVFLRGLTRRPIRDIPLPVKSKITGFQPDSSRPICGFRPYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMK HV RLLKLDMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKSHVSRLLKLDMISVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180
           VALAVK+FRLIQKQ+WYKPDVF+YKDLI+ALA SK+MDDAMELWESMRKE+LFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFMYKDLIIALAGSKKMDDAMELWESMRKEDLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217
           EVIRGFL+YGSPSDAMNIYEDMKKSPDPPDELPFRIL
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217

[Close]

BLAST of Csor.00g016550 vs. ExPASy TrEMBL
Match: A0A5A7SRJ7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00030 PE=4 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 3.06e-135
Identity = 189/217 (87.10%), Postives = 207/217 (95.39%), Query Frame = 0


Query: 1   MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60
           MA+RWFS+SKLPI   VFLRGL RRPIRD+PLPV ST+ GFQPDSSRP+ GFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL KFMK HV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180
           VALAVK+FRLI+KQ+WYKPDV++YKDLI+ALARSK+MDDAM+LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217
           EVIRGFL+YGSPSDAMN+YEDMKKSP+PPDELPFRIL
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRIL 217

[Close]

BLAST of Csor.00g016550 vs. ExPASy TrEMBL
Match: A0A0A0LVE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 3.06e-135
Identity = 187/217 (86.18%), Postives = 207/217 (95.39%), Query Frame = 0


Query: 1   MAMRWFSKSKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60
           MA+RWFS+SKLP+  SVFL+GL RRPIRD+PLPVKST+  FQPDS RP+ GFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK +KFMK HV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180
           VALAVK+FRLI+KQ+WYKPDV++YKDLI+ALARSK+MDDAM+LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 217
           EVIRGFL+YGSPSDAMN+YEDMKKSPDPPDELPFRIL
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRIL 217

[Close]

BLAST of Csor.00g016550 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 280.4 bits (716), Expect = 1.5e-75
Identity = 139/210 (66.19%), Postives = 165/210 (78.57%), Query Frame = 0


Query: 10  KLPICYSVFLRGLMRRP-IRDIPLPVKSTVAGFQPDSSRPLSGF-RLYHDGRPRGPLWRS 69
           K P   S+F + + R P I  I            P   +P + F   +HDGRPRGPLWR 
Sbjct: 10  KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGRPRGPLWRG 69

Query: 70  RKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEEVALAVKV 129
           +K IGKEALFVI GLKR KED+EKL KF+K HV RLLKLDM+AV+GELERQEE ALA+K+
Sbjct: 70  KKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAIKM 129

Query: 130 FRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYTEVIRGFL 189
           F +IQKQEWY+PDVF+YKDLIV+LA+SK+MD+AM LWE M+KENLFPDSQTYTEVIRGFL
Sbjct: 130 FEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFL 189

Query: 190 KYGSPSDAMNIYEDMKKSPDPPDELPFRIL 218
           + G P+DAMN+YEDM KSPDPP+ELPFR+L
Sbjct: 190 RDGCPADAMNVYEDMLKSPDPPEELPFRVL 219

[Close]

BLAST of Csor.00g016550 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 136.0 bits (341), Expect = 4.4e-32
Identity = 58/147 (39.46%), Postives = 103/147 (70.07%), Query Frame = 0


Query: 71  IGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEEVALAVKVFRL 130
           + KE L   + LKR +    +L +F+  HV RLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYTEVIRGFLKYG 190
           ++++ WY+PD+F Y+D+++ LAR+K++D+  ++WE ++KE +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNIYEDMKKSPDPPDELPFRIL 218
            P +AM +Y +M++SPD P  LPFR++
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVI 147

[Close]

BLAST of Csor.00g016550 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-14
Identity = 56/173 (32.37%), Postives = 84/173 (48.55%), Query Frame = 0


Query: 61  RGPLWRSRKAIGKEALFVIQGLKR---------------FKEDEEKLQKFMKCHVLRLLK 120
           R PL R R  +  EA+  +Q LKR                      L + +     RLLK
Sbjct: 496 RKPLQRGR-MLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 555

Query: 121 LDMIAVLGELERQEEVALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWE 180
            DM+AVL EL RQ E +LA+KVF  I+K+ WYKP V +Y D+I  +A +  M++   L+ 
Sbjct: 556 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 615

Query: 181 SMRKE-NLFPDSQTYTEVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 218
           +M+ E  L  + + +  ++   L +      M+ Y  M+     PD   FR+L
Sbjct: 616 AMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVL 667

[Close]

BLAST of Csor.00g016550 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-09
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 124 AVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYTEVI 183
           A++VF L+++Q WYKP+V +Y  LIV L + KQ + A EL++ M  E    + + YT ++
Sbjct: 133 AIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALV 192

Query: 184 RGFLKYGSPSDAMNIYEDMKKSPD-PPDELPFRIL 218
             + + G    A  + E MK S +  PD   + IL
Sbjct: 193 SAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSIL 227

[Close]

BLAST of Csor.00g016550 vs. TAIR 10
Match: AT1G77340.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 5.3e-09
Identity = 33/101 (32.67%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 117 RQEEVALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDS 176
           R++EV  A KVF+ + +   ++ +V  Y  LI  L  +K++D+A+ L   M+ +N  P+ 
Sbjct: 202 RRKEVDAAFKVFKEMTQNGCHRNEV-SYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNV 261

Query: 177 QTYTEVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRIL 218
           +TYT +I      G  S+AMN+++ M +S   PD+  + +L
Sbjct: 262 RTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVL 301

The following BLAST results are available for this feature:

BLAST of Csor.00g016550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF9	2.0e-74	66.19	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	6.2e-31	39.46	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
Q9FKC3	2.5e-08	35.79	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]
Q76C99	4.3e-08	32.91	Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV...	[more]
Q9FMD3	1.3e-07	38.27	Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidop...	[more]

BLAST of Csor.00g016550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583403.1	4.63e-186	100.00	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_022964699.1	3.90e-152	99.54	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964...	[more]
XP_023519300.1	2.15e-149	98.16	protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subs...	[more]
XP_023521051.1	8.76e-149	97.70	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >X...	[more]
XP_022970562.1	7.19e-148	96.77	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_02297056...	[more]

BLAST of Csor.00g016550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLK1	1.89e-152	99.54	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1I496	3.48e-148	96.77	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1E045	1.07e-135	89.40	pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=...	[more]
A0A5A7SRJ7	3.06e-135	87.10	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0LVE9	3.06e-135	86.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1	[more]

BLAST of Csor.00g016550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46870.1	1.5e-75	66.19	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	4.4e-32	39.46	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G09320.1	2.4e-14	32.37	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT5G48730.1	1.8e-09	35.79	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G77340.1	5.3e-09	32.67	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 139..187 e-value: 2.9E-10 score: 40.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 146..175 e-value: 6.9E-6 score: 23.9 coord: 178..205 e-value: 1.3E-4 score: 19.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 140..174 score: 11.169622
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 175..209 score: 10.522905
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 69..220 e-value: 7.5E-46 score: 157.8
None	No IPR available	PANTHER	PTHR46870:SF2	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 4..217
IPR044795	Pentatricopeptide repeat-containing protein THA8L-like	PANTHER	PTHR46870	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 4..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g016550.m01	Csor.00g016550.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding