Csor.00g015500 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g015500
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionPsbP domain-containing protein
LocationCsor_Chr13: 1620429 .. 1628616 (+)
RNA-Seq ExpressionCsor.00g015500
SyntenyCsor.00g015500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATTCCTACCGTGCTGCCATAACCATGGTCTCCGTAGTAAGGAAGATTGCAAAGCAAGGTCTTGTCCATGATGAAATTTTCATTTCAAGTTGATAGGCGCTACTCGTTAAGTAACAGTAACGGAGAAAATGGGTTGAGAATGAGTAACCTCTCTTCCTCTCCTTCGTGCTGGTTTGGTTTGATGGAGAGGGCGAGAGGATTGATGAATTTGAAAGTTTATGGGTATTTTTTAGACTTTTTCGAATGTTTAATGATATTATTCAAACTTTTGAAAGTTTATGATTATTTTTTAGACAGATTAAAAGTTCAATGGTATTTTTATTAAGAAAGTTCAATAGTATTTTTATTAAGAGATCCAAGAACATGATATACCGACATGAGGCACAATTATGACGCTACACACGGACAAGATTTCATGCTATTTTTAAAAAAACTTAAAAGACAAAAATAGTACCAAACACAAGATATTTCTTCTTTATTTATTTCTCCTTCATAATTTTTTCATTCTCATATTTAATTTTTCCTTTAAATACAAAAAAAAATAATAAAAAAAAATAAACCTGAAAAAGTAGAAAGAAGGAAGAAGGAGAAAAAAATACTTAAAATTTAGGAAGTGTATCAAATATTCTTCGACTGAAATAAAGAAAGCATGAAATAACTTATTCTCACGTCCCATCTTTAAAGCTATGTACTAAAGTTTAAGGGTTTTGTTTCCCTTTCTCATTTCTATGTTTATTCCCTTTTTTGTTTCTTTTGGTTAAAGGACCCATTAAATGACAAAATTAAAGTTGTAGTTAGTCAAACTTAATATTTGATGTGCTAGTTTTCAAATAATTTTGAACGGGTTTAAAGAAAGCATTATAATAACATATTCTCATGTCGCTCTTTTACATGTGTTGAATATGTATTAAACACTTGTTCGTACAATGGATATGTTAGACATTTATAAATACAACATTTCGTATAGACATGTCCCTCTTACTGTGAAGCTGGTAGCTTGGAATTACTTACGTTGAGAATATGTTTTAACTTAAAATTCACTCAAGAGAGGATAATTAATACTGTACCATATTCGAGAGAGAATAATTTTTTTTCATTTTTTTATTTTTGAAAAATCAAAGAAAACTAAAATTAAAACATAGCACAAATGACATTTTTTTTACTCTTTGTTTCGTTCTTGGGAATGTAATCTTATATATTGTTTTATAGAATTTAAGATTACTTGTTTAACTGAGCCTAATCCAAACATCTACTTACAAAGTTAATTACACGCTTAAAATGTTTGTACTATTAGTAATACACTAGTCTGCGTTGTTTGACTAAAACAATGCAACTATCATCTCAATTAAAGAATTTGATTCCAACCTATCTCCTAATAGAGGAATGCCCAATTAGTCTTTGTTGTAAGATTGGAATATATCAATTTGAGTAGCTTTCAACCACAACTATAAATATCGAACTCCAAAATATTCATGAGCAAAGTAAGTTTGTTGAAGCTATCTATCAAAGGTGTTCCAAAATGAGTGGCGAAAACTTCCCTTCAGATCTAGTTCCAATTAAGGATGTCAATGAAGAACATGTGCAAAAATCTGGAAGATTTGCAGTGGAACAACATAACAAGGAAGAAGGACATCGTTTCATTTACAAGCGTGTAGTGAACGGTCTGTATGGTCCCACGATAGGCTGGCGTGAAAAATATTATATTATTGTGATAGAAGCTATAAATGACGATGGTTTTCGTTGGTCATATATTGCAAAGGTGGTATGGTTTCCTTCCATGCCGAGAGGATTCTATAAGCTCTTATCTTTTGAAGAAGTCATGGAATTCCCTGTCCCCGAAGTAGGAGTATAACTACTTGGACTGATATCTTTACTTACAATAAGCCCTCTCTCTACTTGTGTTTGTGGGGTATTACTCTCTTCTATCTATAAAAATGGCATAGCCATAATAAAATAATTATCTATATATCAATACTTTTCTCTCTTTTTATTTAGTACTCATCTGATATATCAACTAATTTATTATAAAAAAAAAATGGTTGGTAAAATTAACTCCGACCTAAGAAATACTTCTAAGAAAAACAAGGAAGATAATTTTTAAAGTAAGATAATTTGAATAATTATAAATATAAAAACAAAAGTGGTAAACATTTTTGTAATTTTAGATTTTGTTTTAGTCATTTAATTCTAACCATATAATAAAATATAGTGTTTCAATCAAACTTGCTTCAATTAAAAAATATAATTCATAATTTTTATTTAAAAGAACCCATATAATATTCCTTCCAATGGAAAATTAGTTTTAATTCTAATTAGCCTCTCGTCTTTTGGTTTGACACATTTTTAAATAGGAACGAACCTTAATTTGAGTCAGGTGAGTATTAAGAGTTATAATCGACATTATCTTGCAAGCGGCTTCAAGCATTCAAGAGGTTGAATGTTGAATTTTCTTAGAAGGATAACTAAATCACCAGATAATTATTGTTGAATTTTCAAAGCAGAGGGAATCAAAACTGTGGGGGGAAGAACAACAACGGTTGGATACATATGAATCCTCTCTTGTGCTAGTTGCCCGCCCGAACCCTCGTTCGACGACAAGCTAGCTTTGAGCAAAGTCAGTTGGATGGTCTCGATAGTGGTTGAATCGCTTCCCAACAAATCAAATCCTAACTCAGACCGAGTTCATATGGTTTTTTTTTTTTTCCTTGAGAACTGGGTTCATACAAAAATAAAATAAATAATAAATTCTCTATCAATATTACCATTGTTTTATTCCAATGTGCAATTCATGTCTAGATTTTCGTCCATAATACTCTAAAATTTAAAAAATTTAAAAATATTTAAAAAATACCTAAAAGTTTCCTTATATCCTTAATTTTTTTATTAAAAAAAACTATATTTAAACTAAATTTCAAAAATATCTCTGAATTAAAAAAAAATAACATTAATACCCTTAAAAATATATATATAAAAGTTAAAAATATGATAATGAGAATGAGATAGACTTTCCATCGCTAGTAAGAACTTATTAATTTATTTATTTTTCTAAATATTAAAAGTAGTGTTGCTGAATATTTATTTAATAAAATTTTTTTAAGTTTTTTTAGAAATACCACTGTTTAAAAGGGTATTTTTACCCTCGGAAAAGTTTGATACATTTTAAAATAAAATAATAACTGTTTTTATCTAGGATAAAAATTAACTGTTATGATTCTTTTTTTTTTTTTCTTTTTTTTTTATAAGTTTTAAGAGTATTATTAAAAAAATTTAAATAACAAAATATAAATTTTATTTTAAATTACTTTTATTAATTTACAAAAAAAAAAAAGAAAAAAAAAAAAGTGGATAAGGAAAGCTAACGTGGATGATAGACCGACTCGCACATGCTCTAATACCATTTATAACAACCTAAGTTCACTAGTACTAGATATTGTTCTATCTGGACTTTCCCTTCTGAACTTGTGTTTTTAAAACATGTGTGTTAGGAAGAGGTTTGGTTTTCACACCTATATAAAAAATGTTTTATTCCCCTCTACAATCGATGTGGGATCTCATAGGTATCATACACATACAATAAAATATAACATATAGTGGACCTAAAACGATTCAAAACTAGGTCATCTAGCCTCCATCCCTACCCTAAATAGGAGTATCTAGCATGTAATCCTGATCAAATCCAATGACACTGATCAAATCTATGAGCAAATCTCAAAACACTGATGATTTAGTCGGTGATTTAAAACCAAAACGCAAGTCATCTACCATAGTGGTACAATTAACACATTCACTCCCGAGTGATGAACATCAAATCACTGAATCATAGAGCAATGTCAAACAATTTCTAAAACTCTCCAACAAGATAATTCTTATAGCCTACTCTATTCCAAATTCCTTTCTAGCAAGCAGATACTCGATCAACTCCAACAGCTCAAGTCCACCGCTAATAGATATTGTCTTCTTTGGGTTTTCTCTTTTGGGCTTCTCCTCAAAGTTTTAAAATACGTTTGCTATGAAGAGGTTTCCACGTACTTATAAAGAATGATTGGTTTCCCCCTCTACCCGATGGGATCTCACAAAAACGATCTAAAAACTTGAAACAAGGTGAAACAAAAGCAATCTAACCTTGACATCGAACCAAATAGGCGTTGCTTAGGACGGATACACAAAGCTTATTTTTGGTTATAACTTCTTCTTGTCACTCTCTTGTGAGTTAAATGATTTATATGCTAATGGTTATAGTTGAGATTTAGTTCTTTGCAGGAAATGTGCAACCATACCAGTTCCTTCTGCCTCCAACTTGGAAACAAGTGCGTGTAGCTAACATTTTATCTGGTAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTGGAGGTGAAATTTGAAGATGACAAGCAAGGCAAAATCCAGGTAGTGGCTTCCCCTTTGGTACGTCTCACTAATAAACCCAATGCCACGATTGAAGACATAGGTAGCCCTGACAAGGTTATTGCTTCTCTTGGCCCTTTTGTTACTAGAAATACGTTCGATCCTGAAGAACTCGTTGAATCATCAGTTGAGAAACTCGGTGATCAAACGGTATAATCCTCCCCTGTCTTATAGATTACATTTTTCTTATTATCTTTCTTTAAGCACAATAATGTTACATGAGATCCCACGTTGATCGAAGAGGGGAACGAAGCATTCATTGTAAGGAAACCTCTCCCTTATAAGGAATGTTTCGTGATCTTCAGTTGAGAAACTTGGTGATCAGATGGTATAATCCTCCCTTGTCTTGTAGATTATATTTTTTTTATAATCTTTCTTTAAGCACAATAATCTCACATCGGTTAGAGAGGGAAACGAAGCATTCCTTATAAGAGTGTAGAAACCTTTCTCTTATAAGGAATGCTTCGTTATCACCGGTTGATAAACTTGGTGATCAAACGATATAATCCTCCCCTATCTTGTAGATTATATTTTTGCTTTAAGCACAATAATACTATGTGAGATCCCACATCAGTCGTAGAGGGGAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTTCCTAGTAGACGCGTTTTAAAACTATGAGGCTGACAACAATACGTAACGGGTCAAAGTGGACAATATCTGCTAGCGGTGGACTTGACCTGTTACATGCTATAAAAATACCTCAGAGATATGAGATTTGTTTATCCTCATTCCAGTACATTATCCTTCTAAGAAACTTATAATTTAGTCGTATATTCAATTTAGACTATTCTTTACCCAGAGATTGATAAGTAATGTTATGAACCACAACTCTCCATGTACACTTTGATTTCTCATAAGTCTCATAACTTTGCATTTGGTTTCCCCAAAAAGCGTCCTATAAATGGAGATATATTCCTTACAAACTCTTGATCAACTCCTTAATTAGCGGATGTGGGACTCCCTTTCAACATATAAATGGAGACGGTGGGACTCTCCACAATAATATGATATTGTCCCCTTTGAGCATAAATTCTCATAACTTTGCATTTGGTTTTCCCAAAAAAGCCTCATGTAAATGGAGATGTATTCCTTACAAACTCATGATCAACTCCTTAATTAGGAAATGTGGGACTCCCTCTCAACAATCCTCAAGAATATATCATTTGTAACAAGATGACAAGTTTGAAGTCTCGTTTTTCTTACGTCCTAGTGGCCTTCCTCTAGGCCTCCTTGGTTGAGATTGTTGGATCGATATGACAACCCTAGAGGGGTGAATAGGGTTTCAACCATATCATTATTAAATTTTTTTAATAACAATAAAACTTAATACCATGCAATAAAATTTAACAATAATTTAGAATTTAAATAGGAAAAGGGTTAGAAAATATAACACCTTATTTAAATATCTCAGATAGTTTTATAGTGGTTCCCTAATTTGAATTCGAACACTTCGAACTCACTCGTCACATTGTTCTATGGTTTAGTCGATATGAGCTAGCAGAGGGACCTAATGGACCTATAGATCATGGGCTCCAACGATCCAAGATTAACCGATTAAACTCATTAACCTGGTTAACCAACATTCGTTAACTACTCAAAATAAACTTCGACTCTCAATTTACCGTTTTACCACTCCCCAAAACCGCCCAATGAGAGGGTGGGGCCCCTTGTTCTCTTTTACCTTTCTTCTATCCCTAAAAGGGAGTGAATTCCGTCTTGCACCCCACGAGCCATTCACCCAGTCTTGAAATGGGAGGCCTGTTGAGTCGGCGAACTAGAGCCACTCTCACCCATGCAAATCTAAGGATAATTCCGAATAAACAGGAGTTCATGGTTAGCTCAGGATTAAAACCGAGTTACCTAGGTTATCGAATGAAAAGAAAATCAGATGGTCCGATCTTAACCCTTCATATACAAAAGTGGGCCGCATCCATAGTTCCCCAGAATAAGGTACTCTTTCCTTAGGACTCAGAACTTGATCCACTCTTAACCGTAATCTACATAGCCAGAGTGTTCTTAGCTTTATTGGATTTAGATTAATGATCGTAAAGTTCACTTTTTCACGACTAAATAAACATCAATAATAACTTTATTGTTCACAGAGCAAACCCAACAACTCAATCCTTTCCACGGCTCAGGATCAAACTGGTACATCGCTCCTTTTACGAGTTCAAGAGCAAACTCAATCCTTTCCACGGCTCAAGATCAAACCGGTACACCGCTCTTTTTACGAGTTCAAGAGCAAACTCAATCATTTCCATGGCTCAGGATCAAACCGGTACAATTGTCTGAAATCTTATAGAAACACACCACAACTCTCTAAAGTAGTAGATTTACAATTTTTTCATAATACTTAGAGATAAACCAGAAATAAAATTGGAAAGAGAGCAACAATGGAGGCTTTTAAAAAAAGTTTTGATCGAATAAACGATGGAAGTTGTATATTGTGTTCTATGTTCTGTGTGTTGTAAAATATGGAGAGGTGATAAGTTTACATTTTAAATATATTTTTATTATATATATATATAAATATAAAATATATATATTTAAATGTAATGATATAATTAAAAAAATGTAAATGAAAACAATGTGAATAACCATTTAAAAATAATTAAAAAGTTTTGAAATCATATTTAAATACATTTTTGATAATGTGAATATATATACATATATATATACATATATATATATATATATATATATACATATAGTATATACATATATATATATACATATATATATATATATATATGTATATATATATTTATATGTATATATATATAATTATATGTAATAATATAATAAAAAAAATGTTAATGAGAATAATGTGAATAACCATTTTAAAATAATTAAAAAGTTTTGAAATCATTGTATAATCCAAATACTTTTCTTTTAATTTAGAAGCTATTAAAAATTCTACCATTTGTTACTTTATAAACGTTATAAATCTTATACTTCGATTGGTCCATGATGTCAATTTTGTCGCTGGTCCATAATGCCAATTTTGTCACCACATCATCACCTCAAAAATCTTGTTTTTGAATTCGATTGGTACTTATTCGTTTTAGCTCTCATTTGAGTGAACCAAAAAAGACATTAAAATCGTTATTCCCAATGTTACACTGTCGACAAAATACTAAGAATTGTTAATAATTGAGAGTAGATTTGTTATTATCAAAAAAATTAATTAATTAATAATTACTTAAAATTAATTAATTTGAGATTAAGGGCCAAAAAAAGCGAACAAAGATGATAAGTATGATGAAACACATCGACTATAGCTTGCACTTCACTAATTGAGGCAGCCTCTGGTTTCTTCTTGGATCTGTACTTCAATTCCTTTTTCTCCCGATCCATTAGTTTCTTCACTTTCTTGCTGCCAACGCCAATGGATACTTTTGTAATTATTATGTACAAGTTGATTTTTGTGTTTGTTTGTGTCCGGAGAATTCAAACCTTTAACTACTTGATCTAGTGTATATACTTAACTAATTTGAATAAAATAACCTTAAACACTTATGCTTTTGAATTCTGTTGAGGTTGTGACATGTTTGAATCGTGTGAATACTCATTAGAAGCTTGTTTTTATGTGGTTTATGCAGTATTACAAGTACACACTGGAGACTCCTTATGCTCTGACGGGTACACACAATCTAGCCAAGGCAACGGCTAAAGGAAGCACGGTTGTGTTATTTGTGGCTAGTGCCAATGATAAACAATGGTAG

mRNA sequence

ATGGAAAATTCCTACCGTGCTGCCATAACCATGGTCTCCGTAGTAAGGAAGATTGCAAAGCAAGGAAATGTGCAACCATACCAGTTCCTTCTGCCTCCAACTTGGAAACAAGTGCGTGTAGCTAACATTTTATCTGGTAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTGGAGGTGAAATTTGAAGATGACAAGCAAGGCAAAATCCAGGTAGTGGCTTCCCCTTTGGTACGTCTCACTAATAAACCCAATGCCACGATTGAAGACATAGGTAGCCCTGACAAGGTTATTGCTTCTCTTGGCCCTTTTGTTACTAGAAATACGTTCGATCCTGAAGAACTCGTTGAATCATCAGTTGAGAAACTCGGTGATCAAACGTATTACAAGTACACACTGGAGACTCCTTATGCTCTGACGGGTACACACAATCTAGCCAAGGCAACGGCTAAAGGAAGCACGGTTGTGTTATTTGTGGCTAGTGCCAATGATAAACAATGGTAG

Coding sequence (CDS)

ATGGAAAATTCCTACCGTGCTGCCATAACCATGGTCTCCGTAGTAAGGAAGATTGCAAAGCAAGGAAATGTGCAACCATACCAGTTCCTTCTGCCTCCAACTTGGAAACAAGTGCGTGTAGCTAACATTTTATCTGGTAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTGGAGGTGAAATTTGAAGATGACAAGCAAGGCAAAATCCAGGTAGTGGCTTCCCCTTTGGTACGTCTCACTAATAAACCCAATGCCACGATTGAAGACATAGGTAGCCCTGACAAGGTTATTGCTTCTCTTGGCCCTTTTGTTACTAGAAATACGTTCGATCCTGAAGAACTCGTTGAATCATCAGTTGAGAAACTCGGTGATCAAACGTATTACAAGTACACACTGGAGACTCCTTATGCTCTGACGGGTACACACAATCTAGCCAAGGCAACGGCTAAAGGAAGCACGGTTGTGTTATTTGTGGCTAGTGCCAATGATAAACAATGGTAG

Protein sequence

MENSYRAAITMVSVVRKIAKQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVASANDKQW
Homology
[Close]
BLAST of Csor.00g015500 vs. ExPASy Swiss-Prot
Match: Q9LXX5 (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 7.5e-70
Identity = 118/148 (79.73%), Postives = 140/148 (94.59%), Query Frame = 0 

Query: 20  KQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVR 79
           + GNVQPYQF+LPP WKQ+R+ANILSGNYCQPKCAEPW+EVKFE++KQGK+QVVASPL+R
Sbjct: 99  RAGNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIR 158

Query: 80  LTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSVEKLGDQTYYKYTLETPYAL 139
           LTNKPNATIED+G P+KVIASLGPFVT N++D +EL+++S+EK+GDQTYYKY LETP+AL
Sbjct: 159 LTNKPNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFAL 218

Query: 140 TGTHNLAKATAKGSTVVLFVASANDKQW 168
           TG+HNLAKATAKGSTVVLFV SA +KQW
Sbjct: 219 TGSHNLAKATAKGSTVVLFVVSATEKQW 246

[Close]
BLAST of Csor.00g015500 vs. NCBI nr
Match: KAG6583508.1 (PsbP domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339 bits (869), Expect = 1.84e-117
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MENSYRAAITMVSVVRKIAKQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEV 60
           MENSYRAAITMVSVVRKIAKQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEV
Sbjct: 1   MENSYRAAITMVSVVRKIAKQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEV 60

Query: 61  KFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSV 120
           KFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSV
Sbjct: 61  KFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSV 120

Query: 121 EKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVASANDKQW 167
           EKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVASANDKQW
Sbjct: 121 EKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVASANDKQW 167

[Close]
BLAST of Csor.00g015500 vs. NCBI nr
Match: XP_023524584.1 (psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292 bits (748), Expect = 4.38e-98
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 20  KQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVR 79
           + GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+R
Sbjct: 66  RAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIR 125

Query: 80  LTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSVEKLGDQTYYKYTLETPYAL 139
           LTNKPNATIEDIGSP+KVIASLGPFVT NT+DPEEL+ESSVEKLGDQTYYKYTLETPYAL
Sbjct: 126 LTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYAL 185

Query: 140 TGTHNLAKATAKGSTVVLFVASANDKQW 167
           TGTHNLAKATAKGSTVVLFVASANDKQW
Sbjct: 186 TGTHNLAKATAKGSTVVLFVASANDKQW 213

[Close]
BLAST of Csor.00g015500 vs. NCBI nr
Match: XP_022998891.1 (psbP domain-containing protein 6, chloroplastic [Cucurbita maxima])

HSP 1 Score: 292 bits (748), Expect = 1.25e-97
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 20  KQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVR 79
           + GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+R
Sbjct: 97  RAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIR 156

Query: 80  LTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSVEKLGDQTYYKYTLETPYAL 139
           LTNKPNATIEDIGSP+KVIASLGPFVT NT+DPEEL+ESSVEKLGDQTYYKYTLETPYAL
Sbjct: 157 LTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYAL 216

Query: 140 TGTHNLAKATAKGSTVVLFVASANDKQW 167
           TGTHNLAKATAKGSTVVLFVASANDKQW
Sbjct: 217 TGTHNLAKATAKGSTVVLFVASANDKQW 244

[Close]
BLAST of Csor.00g015500 vs. NCBI nr
Match: XP_022948517.1 (psbP domain-containing protein 6, chloroplastic [Cucurbita moschata] >KAG6607176.1 PsbP domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292 bits (748), Expect = 1.43e-97
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 20  KQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVR 79
           + GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+R
Sbjct: 101 RAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIR 160

Query: 80  LTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSVEKLGDQTYYKYTLETPYAL 139
           LTNKPNATIEDIGSP+KVIASLGPFVT NT+DPEEL+ESSVEKLGDQTYYKYTLETPYAL
Sbjct: 161 LTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYAL 220

Query: 140 TGTHNLAKATAKGSTVVLFVASANDKQW 167
           TGTHNLAKATAKGSTVVLFVASANDKQW
Sbjct: 221 TGTHNLAKATAKGSTVVLFVASANDKQW 248

[Close]
BLAST of Csor.00g015500 vs. NCBI nr
Match: XP_023521520.1 (psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292 bits (748), Expect = 1.43e-97
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 20  KQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVR 79
           + GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+R
Sbjct: 101 RAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIR 160

Query: 80  LTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSVEKLGDQTYYKYTLETPYAL 139
           LTNKPNATIEDIGSP+KVIASLGPFVT NT+DPEEL+ESSVEKLGDQTYYKYTLETPYAL
Sbjct: 161 LTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYAL 220

Query: 140 TGTHNLAKATAKGSTVVLFVASANDKQW 167
           TGTHNLAKATAKGSTVVLFVASANDKQW
Sbjct: 221 TGTHNLAKATAKGSTVVLFVASANDKQW 248

[Close]
BLAST of Csor.00g015500 vs. ExPASy TrEMBL
Match: A0A6J1KBG9 (psbP domain-containing protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493415 PE=4 SV=1)

HSP 1 Score: 292 bits (748), Expect = 6.06e-98
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 20  KQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVR 79
           + GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+R
Sbjct: 97  RAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIR 156

Query: 80  LTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSVEKLGDQTYYKYTLETPYAL 139
           LTNKPNATIEDIGSP+KVIASLGPFVT NT+DPEEL+ESSVEKLGDQTYYKYTLETPYAL
Sbjct: 157 LTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYAL 216

Query: 140 TGTHNLAKATAKGSTVVLFVASANDKQW 167
           TGTHNLAKATAKGSTVVLFVASANDKQW
Sbjct: 217 TGTHNLAKATAKGSTVVLFVASANDKQW 244

[Close]
BLAST of Csor.00g015500 vs. ExPASy TrEMBL
Match: A0A6J1G9G7 (psbP domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452175 PE=4 SV=1)

HSP 1 Score: 292 bits (748), Expect = 6.93e-98
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 20  KQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVR 79
           + GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+R
Sbjct: 101 RAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIR 160

Query: 80  LTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSVEKLGDQTYYKYTLETPYAL 139
           LTNKPNATIEDIGSP+KVIASLGPFVT NT+DPEEL+ESSVEKLGDQTYYKYTLETPYAL
Sbjct: 161 LTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYAL 220

Query: 140 TGTHNLAKATAKGSTVVLFVASANDKQW 167
           TGTHNLAKATAKGSTVVLFVASANDKQW
Sbjct: 221 TGTHNLAKATAKGSTVVLFVASANDKQW 248

[Close]
BLAST of Csor.00g015500 vs. ExPASy TrEMBL
Match: A0A0A0LVB3 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G088470 PE=4 SV=1)

HSP 1 Score: 290 bits (742), Expect = 5.48e-97
Identity = 137/148 (92.57%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 20  KQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVR 79
           + GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQ+VASPL+R
Sbjct: 100 RAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQIVASPLIR 159

Query: 80  LTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSVEKLGDQTYYKYTLETPYAL 139
           LTNKPNATIEDIGSP+KVIASLGPFVT +T+DPEEL+ESSVEKLGDQTYYKYTLETPYAL
Sbjct: 160 LTNKPNATIEDIGSPEKVIASLGPFVTGSTYDPEELLESSVEKLGDQTYYKYTLETPYAL 219

Query: 140 TGTHNLAKATAKGSTVVLFVASANDKQW 167
           TGTHNLAKATAKGSTVVLFVASANDKQW
Sbjct: 220 TGTHNLAKATAKGSTVVLFVASANDKQW 247

[Close]
BLAST of Csor.00g015500 vs. ExPASy TrEMBL
Match: A0A6J1DG13 (psbP domain-containing protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020489 PE=4 SV=1)

HSP 1 Score: 290 bits (741), Expect = 7.78e-97
Identity = 137/148 (92.57%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 20  KQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVR 79
           + GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+R
Sbjct: 100 RAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIR 159

Query: 80  LTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSVEKLGDQTYYKYTLETPYAL 139
           LTNKPNATIEDIGSP+KVIASLGPFVT N++DPEEL+E+SVEKLGDQTYYKYTLETPYAL
Sbjct: 160 LTNKPNATIEDIGSPEKVIASLGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYAL 219

Query: 140 TGTHNLAKATAKGSTVVLFVASANDKQW 167
           TGTHNLAKATAKGSTVVLFVASANDKQW
Sbjct: 220 TGTHNLAKATAKGSTVVLFVASANDKQW 247

[Close]
BLAST of Csor.00g015500 vs. ExPASy TrEMBL
Match: A0A5A7U7M4 (PsbP domain-containing protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00470 PE=4 SV=1)

HSP 1 Score: 289 bits (740), Expect = 1.10e-96
Identity = 137/148 (92.57%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 20  KQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVR 79
           + GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+R
Sbjct: 100 RAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIR 159

Query: 80  LTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSVEKLGDQTYYKYTLETPYAL 139
           LTNKPNATIEDIGSP+KVIASLGPFVT +T+DP+EL+ESSVEKLGDQTYYKYTLETPYAL
Sbjct: 160 LTNKPNATIEDIGSPEKVIASLGPFVTGSTYDPDELLESSVEKLGDQTYYKYTLETPYAL 219

Query: 140 TGTHNLAKATAKGSTVVLFVASANDKQW 167
           TGTHNLAKATAKGSTVVLFVASANDKQW
Sbjct: 220 TGTHNLAKATAKGSTVVLFVASANDKQW 247

[Close]
BLAST of Csor.00g015500 vs. TAIR 10
Match: AT3G56650.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 264.6 bits (675), Expect = 5.3e-71
Identity = 118/148 (79.73%), Postives = 140/148 (94.59%), Query Frame = 0 

Query: 20  KQGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVR 79
           + GNVQPYQF+LPP WKQ+R+ANILSGNYCQPKCAEPW+EVKFE++KQGK+QVVASPL+R
Sbjct: 99  RAGNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIR 158

Query: 80  LTNKPNATIEDIGSPDKVIASLGPFVTRNTFDPEELVESSVEKLGDQTYYKYTLETPYAL 139
           LTNKPNATIED+G P+KVIASLGPFVT N++D +EL+++S+EK+GDQTYYKY LETP+AL
Sbjct: 159 LTNKPNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFAL 218

Query: 140 TGTHNLAKATAKGSTVVLFVASANDKQW 168
           TG+HNLAKATAKGSTVVLFV SA +KQW
Sbjct: 219 TGSHNLAKATAKGSTVVLFVVSATEKQW 246

The following BLAST results are available for this feature:
BLAST of Csor.00g015500 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LXX57.5e-7079.73PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Csor.00g015500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583508.11.84e-117100.00PsbP domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma... [more]
XP_023524584.14.38e-9893.92psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo... [more]
XP_022998891.11.25e-9793.92psbP domain-containing protein 6, chloroplastic [Cucurbita maxima][more]
XP_022948517.11.43e-9793.92psbP domain-containing protein 6, chloroplastic [Cucurbita moschata] >KAG6607176... [more]
XP_023521520.11.43e-9793.92psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo... [more]
BLAST of Csor.00g015500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KBG96.06e-9893.92psbP domain-containing protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1G9G76.93e-9893.92psbP domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0LVB35.48e-9792.57PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G088470 PE=4 S... [more]
A0A6J1DG137.78e-9792.57psbP domain-containing protein 6, chloroplastic OS=Momordica charantia OX=3673 G... [more]
A0A5A7U7M41.10e-9692.57PsbP domain-containing protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
BLAST of Csor.00g015500 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G56650.15.3e-7179.73Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002683PsbP, C-terminalPFAMPF01789PsbPcoord: 25..167
e-value: 1.2E-8
score: 35.2
NoneNo IPR availableGENE3D3.40.1000.10Mog1/PsbP, alpha/beta/alpha sandwichcoord: 12..167
e-value: 2.2E-27
score: 98.0
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 20..167
NoneNo IPR availablePANTHERPTHR31407:SF18PSBP DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTICcoord: 20..167
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILY55724Mog1p/PsbP-likecoord: 21..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g015500.m01Csor.00g015500.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding