Csor.00g015310 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g015310
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr17: 2113778 .. 2114110 (-)
RNA-Seq ExpressionCsor.00g015310
SyntenyCsor.00g015310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAGAAGGTGCTCGTTCTCTTAGTTGTTTCGTTGCTTCTCGTGATGGGAGATGCTGCGATGCACGGCGTGGTCGAGAAGAAGCATGCACGTAAGCTAGCTCGAAGCTTAGGTGGCCAAACAACTCCTGAAACGGAAGTGTTCAGTGGTGTATATGAGCATGGACCTGAAGATGTCGAAGTTGTTGTTGTTGCTGATGTTGTAACTAATATCGACAATAACAATAACGTAGACGATGATGATGAAAATCTAGGTTATAAAAATTACGGAAAAGGTTCTGACACCGAAACTCATCGTTACTTCTCAAGTGACAAACCATACGAACCTTAA

mRNA sequence

ATGATGAAGAAGGTGCTCGTTCTCTTAGTTGTTTCGTTGCTTCTCGTGATGGGAGATGCTGCGATGCACGGCGTGGTCGAGAAGAAGCATGCACGTAAGCTAGCTCGAAGCTTAGGTGGCCAAACAACTCCTGAAACGGAAGTGTTCAGTGGTGTATATGAGCATGGACCTGAAGATGTCGAAGTTGTTGTTGTTGCTGATGTTGTAACTAATATCGACAATAACAATAACGTAGACGATGATGATGAAAATCTAGGTTATAAAAATTACGGAAAAGGTTCTGACACCGAAACTCATCGTTACTTCTCAAGTGACAAACCATACGAACCTTAA

Coding sequence (CDS)

ATGATGAAGAAGGTGCTCGTTCTCTTAGTTGTTTCGTTGCTTCTCGTGATGGGAGATGCTGCGATGCACGGCGTGGTCGAGAAGAAGCATGCACGTAAGCTAGCTCGAAGCTTAGGTGGCCAAACAACTCCTGAAACGGAAGTGTTCAGTGGTGTATATGAGCATGGACCTGAAGATGTCGAAGTTGTTGTTGTTGCTGATGTTGTAACTAATATCGACAATAACAATAACGTAGACGATGATGATGAAAATCTAGGTTATAAAAATTACGGAAAAGGTTCTGACACCGAAACTCATCGTTACTTCTCAAGTGACAAACCATACGAACCTTAA

Protein sequence

MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDVEVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP
Homology
BLAST of Csor.00g015310 vs. NCBI nr
Match: KAG6575119.1 (hypothetical protein SDJN03_25758, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213 bits (542), Expect = 1.94e-69
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 60
           MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV
Sbjct: 1   MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 60

Query: 61  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110
           EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP
Sbjct: 61  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110

BLAST of Csor.00g015310 vs. NCBI nr
Match: KAG7013689.1 (hypothetical protein SDJN02_23856, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213 bits (542), Expect = 3.73e-69
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 60
           MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV
Sbjct: 21  MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 80

Query: 61  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110
           EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP
Sbjct: 81  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 130

BLAST of Csor.00g015310 vs. NCBI nr
Match: TYK02960.1 (uncharacterized protein E5676_scaffold46G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (290), Expect = 4.75e-31
Identity = 67/110 (60.91%), Postives = 79/110 (71.82%), Query Frame = 0

Query: 1   MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 60
           MMK+VL+L  V LLL+M DAAM  VVEKK ARKLA+  G +  P+ EVF+   E   +  
Sbjct: 1   MMKRVLLLFAVLLLLLMADAAMSNVVEKKGARKLAQGSGDRRIPKAEVFNDANEPELKKT 60

Query: 61  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110
           +V     V  NIDN++N +DDD NLGYKNYGKGSDTETHRYFSSDKPY P
Sbjct: 61  DVAPDDVVANNIDNDDN-EDDDVNLGYKNYGKGSDTETHRYFSSDKPYRP 109

BLAST of Csor.00g015310 vs. NCBI nr
Match: KAG6594018.1 (hypothetical protein SDJN03_13494, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026358.1 hypothetical protein SDJN02_12860, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112 bits (280), Expect = 1.36e-29
Identity = 68/110 (61.82%), Postives = 76/110 (69.09%), Query Frame = 0

Query: 1   MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 60
           MMK+ L+L  V LLLV  DA MH V++KK ARKLA+S  GQ  P+T VF GV      DV
Sbjct: 3   MMKRTLLLFAVFLLLVFTDATMHSVIKKKDARKLAQSFSGQI-PKTGVFGGVKYSEDADV 62

Query: 61  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110
                ADV  N    NN D+DDENLGYKNYGKGSDTETHRYFSS+KPY P
Sbjct: 63  ---AQADVGMN----NNEDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104

BLAST of Csor.00g015310 vs. NCBI nr
Match: XP_004150985.1 (uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical protein Csa_021763 [Cucumis sativus])

HSP 1 Score: 103 bits (258), Expect = 3.37e-26
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 0

Query: 1   MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 60
           MMK+VL+L    LLL+M DA    +VEKK ARKLA+    + TP+  VF+   E   E+ 
Sbjct: 3   MMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLENT 62

Query: 61  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110
           +V    DVV N + N++ +DDD NLGYKNYGKGSDTETHRYFSSDKPY P
Sbjct: 63  DVAP-DDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 108

BLAST of Csor.00g015310 vs. ExPASy TrEMBL
Match: A0A5D3BV16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00430 PE=4 SV=1)

HSP 1 Score: 116 bits (290), Expect = 2.30e-31
Identity = 67/110 (60.91%), Postives = 79/110 (71.82%), Query Frame = 0

Query: 1   MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 60
           MMK+VL+L  V LLL+M DAAM  VVEKK ARKLA+  G +  P+ EVF+   E   +  
Sbjct: 1   MMKRVLLLFAVLLLLLMADAAMSNVVEKKGARKLAQGSGDRRIPKAEVFNDANEPELKKT 60

Query: 61  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110
           +V     V  NIDN++N +DDD NLGYKNYGKGSDTETHRYFSSDKPY P
Sbjct: 61  DVAPDDVVANNIDNDDN-EDDDVNLGYKNYGKGSDTETHRYFSSDKPYRP 109

BLAST of Csor.00g015310 vs. ExPASy TrEMBL
Match: A0A0A0KGD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 1.63e-26
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 0

Query: 1   MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 60
           MMK+VL+L    LLL+M DA    +VEKK ARKLA+    + TP+  VF+   E   E+ 
Sbjct: 3   MMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLENT 62

Query: 61  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110
           +V    DVV N + N++ +DDD NLGYKNYGKGSDTETHRYFSSDKPY P
Sbjct: 63  DVAP-DDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6575119.11.94e-69100.00hypothetical protein SDJN03_25758, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7013689.13.73e-69100.00hypothetical protein SDJN02_23856, partial [Cucurbita argyrosperma subsp. argyro... [more]
TYK02960.14.75e-3160.91uncharacterized protein E5676_scaffold46G00430 [Cucumis melo var. makuwa][more]
KAG6594018.11.36e-2961.82hypothetical protein SDJN03_13494, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_004150985.13.37e-2656.36uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
A0A5D3BV162.30e-3160.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KGD61.63e-2656.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g015310.m01Csor.00g015310.m01mRNA