Csor.00g015230 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g015230
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DEAD-box ATP-dependent RNA helicase 10-like
Location	Csor_Chr17: 2169516 .. 2172154 (+)
RNA-Seq Expression	Csor.00g015230
Synteny	Csor.00g015230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGTGAGTAACTCATCTCCAGCAAGCCCGTTCCCTGAAGTCTTACCCTCGGCACCCTCGTCTTTGGTTGTCACAATGCCACCATTGTCTTTGGGTACCACAATGGCCTTCATTCTTTTGTGCCTGCATGTCCTATAGCTTATTTCATCAGTTCTGAAATGCGCTCTGTGAACTCCGCCACTGTCACTCCATATGGTTCACAACCTTCTCCCCTGCGTGTTCATAAAGAAGAGATCTGATTACTGCATCTTGACCCGATTCGAACTCCTAGAAGACCTGCAACAAGCCTGAAACATCGACTCGTAGGGAGTGTGTTTAGTGTCATGTATGTATGTAAGATAGAAAAGTGGTCTTTGAATTTCAGGGAATACCTTCTTGGAGGCAGCAGATTTGAGCTTTGGATTTGCTTTCTCCAGCCAATACCCAGTGGAGTCCAACATTAGGAAGGATTTAGCTTGCGAGAAGGAAATTCACGTCATTAGCAACGGGTCGAAAGGTGGGTTCGTCCCACAAGCCAAGGTCCTCTATCCATCACTCTGTTGGCCAAATGATTCTGAACTCAAGTTCAGCAATGGCCTTGGAAATCCTTTTCACTGTATCTTTTAATGGCCCTGCATAAATTCGTGTTGTAAGTCTAGTTAGGATCGCACAAAACGCACGTACTCAAAAGATTGAGCAGGAGAGGAGCGAAAATGCAAGAAGTATATTGACTAAAGAATATATGTAAACAATTGAATAACCTAAAATAGGCATCTAGTGCCTCCATAACCCGACCAAAGTCAACTAGAAAAGATACTCTCACAAAAGTCGAGTAGAAAAATAACCTCACGTGACCAACTTCCCTGGCAGGCTAATTGCGTGATTATGTCCTTGATGAGGGGCTCAAGTTGGCCTTTTGAGGCCACCAACAGGTATGATTGCCGCTCCCATTGCTAATCCTGGGTGCAGGACTTTATTCCAAACCATGTCCCAGGTGGGAAGAGCTAATAAAGAAGAATTCGTCTTCCAGGTACTCTAAATTCAGAGAAAAATAAATAACTAAAATAATAACAGTTGTTTTCTTAGATGCATACACGTGAGACATTATCTGTTAAGTGTTTGCTGATCAAGTTGAGATAATAATACAGGTTCGGAAACTTCAAAGGGCCTGCTTAAGGAATCCTGTTAAGGTATGTTTGTGATTATCAAGATCTAGTTTTCAGTTCCTGAGTTTATTCCAATCTTAACTTTCTTGGTCCTCGAATTCATTCAGATTGAAGCGGCAAGCAAATATTCCACAGTAGACACACTGAAGCAAGAGTATTGTTTTATCCCTGCCAAATATAAGGTTTCCCTACTTAAATATTGGTTTATTATTTTTGTTTGTCATAACTTCTGGTCACAACAAATCTGGATATTTTGAGAAACTACTTTCGGCCATAGTTGAGGACTGACAGAAGGGGTCTAATCAGTTGGTTTATTTATTTATTTATTTATTTATTTATTTTGGCGTTTCAAAGAGCTATCATGCATGAGTAATTTACCAACTTTTTGATGGGAAGCACATTTGGTTTACTGCTGGATTTACTTTATTACACGTCACTTCGAAATCTTGGATTATGAGAGCCAGTCCCGAAGTTGGTAATATGAACCAGGTAGTGTTGTAAATAGAACTAAGTTGTTACACCTCTTTCTCTAGGTATGAAATATTTGAAAGTTGAAAAAAAGACTTGGAAACCCATTTGTATGTTTCATTTATCAACTAGGTTTCTTATTAAAAGAATTTGGAGGTCGGTAAAACCTTTCTTTTTCTTTGCCTTACATCATTTGTGGAATTATTTCTACTAAACTCGGTGCATGGACCATGTCTTTGACAGGCAAGGAGACTAGGAGCCTTAAATAAGTTCAAGGCTGGAGAGTGCAACGTCCTTATCTGCACTGATGTGGCCAGCAGAGGACTTGATATTTACCATCTGTGGATATGGTCATAAATTATGATATTCCTTCAAATTCTAAGGTTCTCCTTCTGCCCGCAATTCTATGTATTACTTTTGACAAAATAGCTTCATAGATTCCCCAAACTAAAAATCGAGCTTGAGAATCGATGGAAATTGGCTTAGATAATTAAAAGATTAGGTCTTCAGCTCTTCCAATGTTCTTCTAAGATGACTTTGTGTGCAGGATTACATACATAGAGTGGGAAGAACTGCTCGTGCAGGTCGTTCTGGGGTTGCCATTTCGTTAGTTAACCAGTATGAGTTAGAGTGGTACATACAGATAGAGAAGCTCATAGGTAACCAAAGAATGCCCTTTTTTTAGCCTCAGAACATGCCAGATGTCTTTTTACTTATCTATAACCAACTTCTTCAATATGGCAGGGAAAAAACTACCACAGTTTTCGGCACAGGAAGAGGAAGTTTTGATGTTGTTCGATATACGTGTGGCCGAGGCAAAGAGAATATCTATTATGGTATGGTATTTACTTACTAAATTATGGTCACGAGTCTTATGACTTAACTACAATTATTACTCATTCATTCTTTTCCTACTTGGTTAATGTGGTGGTTGAACGTGTTCAGAAAATCAAAGAAAGTGGTGGCAAAAAGAGAAGGAGAGGTGGAGGAGATGACGATGACACACGACGACAACGACGTTGA

mRNA sequence

ATGCCAGTGAGTAACTCATCTCCAGCAAGCCCGTTCCCTGAAGTCTTACCCTCGGCACCCTCGTCTTTGGTTGTCACAATGCCACCATTGTCTTTGGGGAATACCTTCTTGGAGGCAGCAGATTTGAGCTTTGGATTTGCTTTCTCCAGCCAATACCCAGTGGAGTCCAACATTAGGAAGGATTTAGCTTGCGAGAAGGAAATTCACGTCATTAGCAACGGGTCGAAAGGTGGGTTCGTCCCACAAGCCAAGGTCCTCTATCCATCACTCTGTTGGCCAAATGATTCTGAACTCAAGTTCAGCAATGGCCTTGGAAATCCTTTTCACTTTGGCCTTTTGAGGCCACCAACAGGTATGATTGCCGCTCCCATTGCTAATCCTGGGTGCAGGACTTTATTCCAAACCATGTCCCAGGTGGGAAGAGCTAATAAAGAAGAATTCGTCTTCCAGGTTCGGAAACTTCAAAGGGCCTGCTTAAGGAATCCTGTTAAGATTGAAGCGGCAAGCAAATATTCCACAGTAGACACACTGAAGCAAGAGTATTGTTTTATCCCTGCCAAATATAAGGATTACATACATAGAGTGGGAAGAACTGCTCGTGCAGGTCGTTCTGGGGTTGCCATTTCGTTAGTTAACCAGTATGAGTTAGAGTGGTACATACAGATAGAGAAGCTCATAGGGAAAAAACTACCACAGTTTTCGGCACAGGAAGAGGAAGTTTTGATGTTGTTCGATATACGTGTGGCCGAGGCAAAGAGAATATCTATTATGAAAATCAAAGAAAGTGGTGGCAAAAAGAGAAGGAGAGGTGGAGGAGATGACGATGACACACGACGACAACGACGTTGA

Coding sequence (CDS)

ATGCCAGTGAGTAACTCATCTCCAGCAAGCCCGTTCCCTGAAGTCTTACCCTCGGCACCCTCGTCTTTGGTTGTCACAATGCCACCATTGTCTTTGGGGAATACCTTCTTGGAGGCAGCAGATTTGAGCTTTGGATTTGCTTTCTCCAGCCAATACCCAGTGGAGTCCAACATTAGGAAGGATTTAGCTTGCGAGAAGGAAATTCACGTCATTAGCAACGGGTCGAAAGGTGGGTTCGTCCCACAAGCCAAGGTCCTCTATCCATCACTCTGTTGGCCAAATGATTCTGAACTCAAGTTCAGCAATGGCCTTGGAAATCCTTTTCACTTTGGCCTTTTGAGGCCACCAACAGGTATGATTGCCGCTCCCATTGCTAATCCTGGGTGCAGGACTTTATTCCAAACCATGTCCCAGGTGGGAAGAGCTAATAAAGAAGAATTCGTCTTCCAGGTTCGGAAACTTCAAAGGGCCTGCTTAAGGAATCCTGTTAAGATTGAAGCGGCAAGCAAATATTCCACAGTAGACACACTGAAGCAAGAGTATTGTTTTATCCCTGCCAAATATAAGGATTACATACATAGAGTGGGAAGAACTGCTCGTGCAGGTCGTTCTGGGGTTGCCATTTCGTTAGTTAACCAGTATGAGTTAGAGTGGTACATACAGATAGAGAAGCTCATAGGGAAAAAACTACCACAGTTTTCGGCACAGGAAGAGGAAGTTTTGATGTTGTTCGATATACGTGTGGCCGAGGCAAAGAGAATATCTATTATGAAAATCAAAGAAAGTGGTGGCAAAAAGAGAAGGAGAGGTGGAGGAGATGACGATGACACACGACGACAACGACGTTGA

Protein sequence

MPVSNSSPASPFPEVLPSAPSSLVVTMPPLSLGNTFLEAADLSFGFAFSSQYPVESNIRKDLACEKEIHVISNGSKGGFVPQAKVLYPSLCWPNDSELKFSNGLGNPFHFGLLRPPTGMIAAPIANPGCRTLFQTMSQVGRANKEEFVFQVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEVLMLFDIRVAEAKRISIMKIKESGGKKRRRGGGDDDDTRRQRR

Homology

[Close]

BLAST of Csor.00g015230 vs. ExPASy Swiss-Prot
Match: Q8GY84 (DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana OX=3702 GN=RH10 PE=1 SV=2)

HSP 1 Score: 156.0 bits (393), Expect = 6.3e-37
Identity = 102/225 (45.33%), Postives = 117/225 (52.00%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKY--------------------- 209
           +VRKLQRACLRNPVKIEAASKYSTVDTLKQ+Y F+ AKY                     
Sbjct: 208 KVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFT 267

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 268 RTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIP 327

Query: 270 --------------KDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 280
                         KDYIHRVGRTARAGRSGV ISLVNQYELEWYIQIEKLIGKKLP++ 
Sbjct: 328 SVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYP 387

[Close]

BLAST of Csor.00g015230 vs. ExPASy Swiss-Prot
Match: A2XKG2 (DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. indica OX=39946 GN=RH10 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.6e-24
Identity = 74/227 (32.60%), Postives = 102/227 (44.93%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKY--------------------- 209
           +V KLQRACLRNPVK+E ASKYSTVDTL+QE+ F+PA Y                     
Sbjct: 230 KVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVLNELPGSMIMIFV 289

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 290 RTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLDIQ 349

Query: 270 --------------KDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 282
                         KDY+HRVGRTARAG +G A+SLVNQYE  W+  IEKL+G ++P   
Sbjct: 350 GVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFKMIEKLLGYEIPDRK 409

[Close]

BLAST of Csor.00g015230 vs. ExPASy Swiss-Prot
Match: Q7Y183 (DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=RH10 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.6e-24
Identity = 74/227 (32.60%), Postives = 102/227 (44.93%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKY--------------------- 209
           +V KLQRACLRNPVK+E ASKYSTVDTL+QE+ F+PA Y                     
Sbjct: 230 KVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVLNELPGSMIMIFV 289

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 290 RTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLDIQ 349

Query: 270 --------------KDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 282
                         KDY+HRVGRTARAG +G A+SLVNQYE  W+  IEKL+G ++P   
Sbjct: 350 GVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFKMIEKLLGYEIPDRK 409

[Close]

BLAST of Csor.00g015230 vs. ExPASy Swiss-Prot
Match: Q9H0S4 (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens OX=9606 GN=DDX47 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-22
Identity = 78/225 (34.67%), Postives = 102/225 (45.33%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKY--------------------- 209
           +V+KLQRA L+NPVK   +SKY TV+ L+Q Y FIP+K+                     
Sbjct: 211 KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFC 270

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 271 STCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIP 330

Query: 270 --------------KDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 278
                         KDYIHRVGRTARAGRSG AI+ V QY++E + +IE LIGKKLP F 
Sbjct: 331 HVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFP 390

[Close]

BLAST of Csor.00g015230 vs. ExPASy Swiss-Prot
Match: Q9CWX9 (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 5.8e-22
Identity = 78/224 (34.82%), Postives = 101/224 (45.09%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKY--------------------- 209
           +V+KLQRA L+NPVK   +SKY TV+ L+Q Y FIP+K+                     
Sbjct: 211 KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFC 270

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 271 STCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIP 330

Query: 270 --------------KDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 277
                         KDYIHRVGRTARAGRSG AI+ V QY++E + +IE LIGKKLP F 
Sbjct: 331 HVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFP 390

[Close]

BLAST of Csor.00g015230 vs. NCBI nr
Match: KAG6575127.1 (DEAD-box ATP-dependent RNA helicase 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 554 bits (1427), Expect = 1.05e-198
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MPVSNSSPASPFPEVLPSAPSSLVVTMPPLSLGNTFLEAADLSFGFAFSSQYPVESNIRK 60
           MPVSNSSPASPFPEVLPSAPSSLVVTMPPLSLGNTFLEAADLSFGFAFSSQYPVESNIRK
Sbjct: 1   MPVSNSSPASPFPEVLPSAPSSLVVTMPPLSLGNTFLEAADLSFGFAFSSQYPVESNIRK 60

Query: 61  DLACEKEIHVISNGSKGGFVPQAKVLYPSLCWPNDSELKFSNGLGNPFHFGLLRPPTGMI 120
           DLACEKEIHVISNGSKGGFVPQAKVLYPSLCWPNDSELKFSNGLGNPFHFGLLRPPTGMI
Sbjct: 61  DLACEKEIHVISNGSKGGFVPQAKVLYPSLCWPNDSELKFSNGLGNPFHFGLLRPPTGMI 120

Query: 121 AAPIANPGCRTLFQTMSQVGRANKEEFVFQVRKLQRACLRNPVKIEAASKYSTVDTLKQE 180
           AAPIANPGCRTLFQTMSQVGRANKEEFVFQVRKLQRACLRNPVKIEAASKYSTVDTLKQE
Sbjct: 121 AAPIANPGCRTLFQTMSQVGRANKEEFVFQVRKLQRACLRNPVKIEAASKYSTVDTLKQE 180

Query: 181 YCFIPAKYKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEV 240
           YCFIPAKYKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEV
Sbjct: 181 YCFIPAKYKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEV 240

Query: 241 LMLFDIRVAEAKRISIMKIKESGGKKRRRGGGDDDDTRRQRR 282
           LMLFDIRVAEAKRISIMKIKESGGKKRRRGGGDDDDTRRQRR
Sbjct: 241 LMLFDIRVAEAKRISIMKIKESGGKKRRRGGGDDDDTRRQRR 282

[Close]

BLAST of Csor.00g015230 vs. NCBI nr
Match: KAG6605763.1 (DEAD-box ATP-dependent RNA helicase 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (506), Expect = 6.28e-57
Identity = 125/223 (56.05%), Postives = 126/223 (56.50%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYK-------------------- 209
           +VRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYK                    
Sbjct: 197 KVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYKECYLVYILTEMSGSTSMVFT 256

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 257 RTCDATRLLSLILRNLGLRAIPISGQMTQVLLLGALNKFKAGECNVLICTDVASRGLDIP 316

Query: 270 ---------------DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 277
                          DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS
Sbjct: 317 SVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 376

[Close]

BLAST of Csor.00g015230 vs. NCBI nr
Match: XP_022957788.1 (DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita moschata] >XP_022957789.1 DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita moschata] >XP_022995218.1 DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita maxima] >XP_022995219.1 DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita maxima] >KAG7035728.1 DEAD-box ATP-dependent RNA helicase 10 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199 bits (506), Expect = 6.28e-57
Identity = 125/223 (56.05%), Postives = 126/223 (56.50%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYK-------------------- 209
           +VRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYK                    
Sbjct: 197 KVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYKECYLVYILTEMSGSTSMVFT 256

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 257 RTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAGECNVLICTDVASRGLDIP 316

Query: 270 ---------------DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 277
                          DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS
Sbjct: 317 SVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 376

[Close]

BLAST of Csor.00g015230 vs. NCBI nr
Match: XP_023534735.1 (DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197 bits (500), Expect = 4.86e-56
Identity = 124/223 (55.61%), Postives = 125/223 (56.05%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYK-------------------- 209
           +VRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYK                    
Sbjct: 197 KVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYKECYLVYILTEMSGSTSMVFT 256

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 257 RTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAGECNVLICTDVASRGLDIP 316

Query: 270 ---------------DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 277
                          DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS
Sbjct: 317 SVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 376

[Close]

BLAST of Csor.00g015230 vs. NCBI nr
Match: GER30794.1 (ATP-dependent RNA helicase [Striga asiatica])

HSP 1 Score: 191 bits (484), Expect = 3.67e-54
Identity = 108/176 (61.36%), Postives = 119/176 (67.61%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYKD------------------- 209
           +V+KLQRACLRNPVKIEAASKYSTVDTLKQ+YCF+PAKYKD                   
Sbjct: 195 KVKKLQRACLRNPVKIEAASKYSTVDTLKQQYCFVPAKYKDCYLVYILTEMLDRTSMVFT 254

Query: 210 ------------------------------YIHRVGRTARAGRSGVAISLVNQYELEWYI 269
                                         YIHRVGRTARAGRSGVAIS+VNQYELEWY+
Sbjct: 255 RTCDATTLLAHILRTLGFAAIPINGHMTQDYIHRVGRTARAGRSGVAISIVNQYELEWYL 314

Query: 270 QIEKLIGKKLPQFSAQEEEVLMLFDIRVAEAKRISIMKIKESGGKKRRRGGGDDDD 276
           QIEKLIGKKLP++ AQEEEVL+L + RV EAKRIS M IKE GGKKRR+G GDDDD
Sbjct: 315 QIEKLIGKKLPEYPAQEEEVLLLLE-RVQEAKRISQMAIKEGGGKKRRKGDGDDDD 369

[Close]

BLAST of Csor.00g015230 vs. ExPASy TrEMBL
Match: A0A6J1K797 (DEAD-box ATP-dependent RNA helicase 10-like OS=Cucurbita maxima OX=3661 GN=LOC111490827 PE=3 SV=1)

HSP 1 Score: 199 bits (506), Expect = 3.04e-57
Identity = 125/223 (56.05%), Postives = 126/223 (56.50%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYK-------------------- 209
           +VRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYK                    
Sbjct: 197 KVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYKECYLVYILTEMSGSTSMVFT 256

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 257 RTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAGECNVLICTDVASRGLDIP 316

Query: 270 ---------------DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 277
                          DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS
Sbjct: 317 SVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 376

[Close]

BLAST of Csor.00g015230 vs. ExPASy TrEMBL
Match: A0A6J1H304 (DEAD-box ATP-dependent RNA helicase 10-like OS=Cucurbita moschata OX=3662 GN=LOC111459226 PE=3 SV=1)

HSP 1 Score: 199 bits (506), Expect = 3.04e-57
Identity = 125/223 (56.05%), Postives = 126/223 (56.50%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYK-------------------- 209
           +VRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYK                    
Sbjct: 197 KVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYKECYLVYILTEMSGSTSMVFT 256

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 257 RTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAGECNVLICTDVASRGLDIP 316

Query: 270 ---------------DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 277
                          DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS
Sbjct: 317 SVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 376

[Close]

BLAST of Csor.00g015230 vs. ExPASy TrEMBL
Match: A0A5A7PDT5 (ATP-dependent RNA helicase OS=Striga asiatica OX=4170 GN=STAS_06754 PE=3 SV=1)

HSP 1 Score: 191 bits (484), Expect = 1.77e-54
Identity = 108/176 (61.36%), Postives = 119/176 (67.61%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYKD------------------- 209
           +V+KLQRACLRNPVKIEAASKYSTVDTLKQ+YCF+PAKYKD                   
Sbjct: 195 KVKKLQRACLRNPVKIEAASKYSTVDTLKQQYCFVPAKYKDCYLVYILTEMLDRTSMVFT 254

Query: 210 ------------------------------YIHRVGRTARAGRSGVAISLVNQYELEWYI 269
                                         YIHRVGRTARAGRSGVAIS+VNQYELEWY+
Sbjct: 255 RTCDATTLLAHILRTLGFAAIPINGHMTQDYIHRVGRTARAGRSGVAISIVNQYELEWYL 314

Query: 270 QIEKLIGKKLPQFSAQEEEVLMLFDIRVAEAKRISIMKIKESGGKKRRRGGGDDDD 276
           QIEKLIGKKLP++ AQEEEVL+L + RV EAKRIS M IKE GGKKRR+G GDDDD
Sbjct: 315 QIEKLIGKKLPEYPAQEEEVLLLLE-RVQEAKRISQMAIKEGGGKKRRKGDGDDDD 369

[Close]

BLAST of Csor.00g015230 vs. ExPASy TrEMBL
Match: A0A0A0KM04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139720 PE=3 SV=1)

HSP 1 Score: 187 bits (475), Expect = 1.25e-52
Identity = 117/223 (52.47%), Postives = 124/223 (55.61%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYK-------------------- 209
           +VRKLQRACLRNPVKIEAA+KYSTVDTLKQ+YCFIPAKYK                    
Sbjct: 196 KVRKLQRACLRNPVKIEAATKYSTVDTLKQQYCFIPAKYKECYLVYILTEMSGSTSMVFT 255

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 256 RTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAGECNILICTDVASRGLDIP 315

Query: 270 ---------------DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 277
                          DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS
Sbjct: 316 SVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 375

[Close]

BLAST of Csor.00g015230 vs. ExPASy TrEMBL
Match: A0A6J1DVN1 (DEAD-box ATP-dependent RNA helicase 10-like OS=Momordica charantia OX=3673 GN=LOC111023933 PE=3 SV=1)

HSP 1 Score: 186 bits (473), Expect = 2.51e-52
Identity = 116/222 (52.25%), Postives = 124/222 (55.86%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKYK-------------------- 209
           +VRKLQRACLRNPVKIEAA+KYSTVDTLKQ+YCFIPAKYK                    
Sbjct: 197 KVRKLQRACLRNPVKIEAATKYSTVDTLKQKYCFIPAKYKECYLVYILTEMSGCTSMVFT 256

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 257 RTCDATRLLSLVLRNLGLRAIPISGQMTQAKRLGALNKFKAGECNVLICTDVASRGLDIP 316

Query: 270 ---------------DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 276
                          DYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS
Sbjct: 317 SVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 376

[Close]

BLAST of Csor.00g015230 vs. TAIR 10
Match: AT5G60990.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 156.0 bits (393), Expect = 4.5e-38
Identity = 102/225 (45.33%), Postives = 117/225 (52.00%), Query Frame = 0


Query: 150 QVRKLQRACLRNPVKIEAASKYSTVDTLKQEYCFIPAKY--------------------- 209
           +VRKLQRACLRNPVKIEAASKYSTVDTLKQ+Y F+ AKY                     
Sbjct: 208 KVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFT 267

Query: 210 ------------------------------------------------------------ 269
                                                                       
Sbjct: 268 RTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIP 327

Query: 270 --------------KDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFS 280
                         KDYIHRVGRTARAGRSGV ISLVNQYELEWYIQIEKLIGKKLP++ 
Sbjct: 328 SVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYP 387

[Close]

BLAST of Csor.00g015230 vs. TAIR 10
Match: AT1G16280.1 (RNA helicase 36 )

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-10
Identity = 31/80 (38.75%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 184 IPAKYKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEVLML 243
           IP   +DY+HRVGRTARAGR G+A+S++ + +++   +IE+ +GKK+  ++ ++     L
Sbjct: 379 IPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPYN-KKVITDSL 438

Query: 244 FDIRVAEAKRISIMKIKESG 264
              +V++AKR+++MK+ ++G
Sbjct: 439 EVTKVSKAKRVAMMKMLDNG 457

[Close]

BLAST of Csor.00g015230 vs. TAIR 10
Match: AT4G16630.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 45.8 bits (107), Expect = 6.6e-05
Identity = 22/57 (38.60%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 185 PAKYKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEVL 242
           P +   Y+HRVGRTARAGR G A++ V   +      I K +G KL      E+ ++
Sbjct: 490 PREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPEQSIV 546

[Close]

BLAST of Csor.00g015230 vs. TAIR 10
Match: AT1G20920.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.9e-04
Identity = 17/42 (40.48%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 185 PAKYKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLI 227
           P  Y+DY+HRVGRT RAGR G A++ +++ + ++   + K +
Sbjct: 854 PNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKAL 895

[Close]

BLAST of Csor.00g015230 vs. TAIR 10
Match: AT1G20920.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.9e-04
Identity = 17/42 (40.48%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 185 PAKYKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLI 227
           P  Y+DY+HRVGRT RAGR G A++ +++ + ++   + K +
Sbjct: 516 PNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKAL 557

The following BLAST results are available for this feature:

BLAST of Csor.00g015230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GY84	6.3e-37	45.33	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana OX=3702 GN=RH10 P...	[more]
A2XKG2	3.6e-24	32.60	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
Q7Y183	3.6e-24	32.60	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q9H0S4	3.4e-22	34.67	Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens OX=9606 GN=DDX47 PE=1 ...	[more]
Q9CWX9	5.8e-22	34.82	Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus OX=10090 GN=Ddx47 PE=2...	[more]

BLAST of Csor.00g015230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575127.1	1.05e-198	100.00	DEAD-box ATP-dependent RNA helicase 10, partial [Cucurbita argyrosperma subsp. s...	[more]
KAG6605763.1	6.28e-57	56.05	DEAD-box ATP-dependent RNA helicase 10, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022957788.1	6.28e-57	56.05	DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita moschata] >XP_022957789.1...	[more]
XP_023534735.1	4.86e-56	55.61	DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita pepo subsp. pepo]	[more]
GER30794.1	3.67e-54	61.36	ATP-dependent RNA helicase [Striga asiatica]	[more]

BLAST of Csor.00g015230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K797	3.04e-57	56.05	DEAD-box ATP-dependent RNA helicase 10-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1H304	3.04e-57	56.05	DEAD-box ATP-dependent RNA helicase 10-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5A7PDT5	1.77e-54	61.36	ATP-dependent RNA helicase OS=Striga asiatica OX=4170 GN=STAS_06754 PE=3 SV=1	[more]
A0A0A0KM04	1.25e-52	52.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139720 PE=3 SV=1	[more]
A0A6J1DVN1	2.51e-52	52.25	DEAD-box ATP-dependent RNA helicase 10-like OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Csor.00g015230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60990.1	4.5e-38	45.33	DEA(D/H)-box RNA helicase family protein	[more]
AT1G16280.1	1.8e-10	38.75	RNA helicase 36	[more]
AT4G16630.1	6.6e-05	38.60	DEA(D/H)-box RNA helicase family protein	[more]
AT1G20920.1	1.9e-04	40.48	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G20920.2	1.9e-04	40.48	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 182..268 e-value: 3.5E-11 score: 45.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 185..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..282
None	No IPR available	PANTHER	PTHR24031:SF728	BNAC02G41920D PROTEIN	coord: 189..278 coord: 150..190
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 189..278 coord: 150..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g015230.m01	Csor.00g015230.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding