Csor.00g014860 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g014860
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr19: 6526197 .. 6527736 (-)
RNA-Seq ExpressionCsor.00g014860
SyntenyCsor.00g014860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCAACTCCAATGCTTTGGATTAGTGTCGATACCATGAGAGACGTCATCGTCTATTTGAGCCTTCACCTCCAATTGCCACATCATAGATCGGAAAAAGGTTCTAGAGTGGTTCATTGGGAGTTCCGAAAAGGGTGGCCGCCACAAAAGGATAAACACATGGTGGACATTGTCATGGTACTTCTTGTGCACAGTTAAAACTTAGACCAAAGAAGATAATAAGAAATCGTGTGGTTAATGTTTTGAGGCTGACAATCGTAAAAAGACTCAATGGTTTTCGATTTAGTTCAACGATTCAACAACTTTTCCATCATTCTAACGTATTCGAGTCTATTCAAGTTTTCTTTGTCTCTATTGAAGCTAGTTTAGCTTGATTTAGTATAACCGAGGTCGATTTGGGTTTGATTTGGCCAAGTTTGGTGCAGTTTTGTATGTTCTTTCAGTTCTTTACAACTTTATATTAGTCTCCATTCCGTCTCGACTCATTTATTGAGTTTTCTTCGATTTTTAGTCATTTCAATAATGATTTAAATCATTATTATTAGTTTTATTAATCGAATAATTATTTGTATAATTGAACTTTATAATTACAAAACTTAAATGGGCATTAATTATACCACTAGGACACAAACTTTTTTATTTATGGAAAATGGTTAAATAAGTAAATATATTTTTAAAATTATAAAAAGAATATTAATAAAAACGAAAAATTATTTTAATTATATTTGAACCATTTAAATATTATTAATTCACCCCAAGCGCGTGCAATACACGGGCAGTTATTTTTCATATTTGGAAATGAATTGTTGTCTCAGGATAAAAATAATATAATTTTATTTAAAAAAAAAACAAAAAAACAATAAATACCAAATCAGGGTTCTGCCGTTTTCATTTCGCGTTAACAATCCCAACTGCCACATCACATTTGAACATCCAATTTGGCTTTCCTTCCGCCGCTGCTTATAAAATCAACTCGTTAAGAGTATCGAAAATCGCGCTCTTCGATTCCCATTGCATATCTCCTCCCCCAAATCTCTCCTCTATCAATCTCGCCGCGTCTTCTTCTCTTACTCGGATTCCTCTTTTTCCTCCGCCGCGGACATTCTTGGTGAGTCTTTCTTTTTCCATTTCTCCTTGTTATTCTTTCGAATTTTTTAGCGTTTTTTGAGCTGCTGATTTGATTATTACAACTGCTTGATGGTTATTGGCGTTTATTGTTTGGGGGAAGCGATTTCTGTGGATTTTGCGATATAGGTCTTGGTTACGTTTTTAGGATTTCTGCGTTTGTTCGATTGTGTTCTTCTGGTTCTTTCTGGAATTTGAGGAAAACAGGGAAAGAATTTGTTGATTTTGATTAAATTTAGATGTTTCGTGTTTGAACACGGATTTTTTTAATTTCTAGGGTCAACAAAAGGCGAAGTCAATATGTTTTTCCCTAATTTCTGAACGCCAGTATTGATTTGAATGCTTTGTCGACTAATCCGAGCATGTTTTGATGGTTGTTTTTGAATTTGGGGTTTCTTAGCAAGAAATTTAG

mRNA sequence

ATGTCTTCAACTCCAATGCTTTGGATTAGTGTCGATACCATGAGAGACGTCATCGTCTATTTGAGCCTTCACCTCCAATTGCCACATCATAGATCGGAAAAAGGGTTCTGCCGTTTTCATTTCGCGTTAACAATCCCAACTGCCACATCACATTTGAACATCCAATTTGGCTTTCCTTCCGCCGCTGCTTATAAAATCAACTCGTTAAGAGTATCGAAAATCGCGCTCTTCGATTCCCATTGCATATCTCCTCCCCCAAATCTCTCCTCTATCAATCTCGCCGCGTCTTCTTCTCTTACTCGGATTCCTCTTTTTCCTCCGCCGCGGACATTCTTGCAAGAAATTTAG

Coding sequence (CDS)

ATGTCTTCAACTCCAATGCTTTGGATTAGTGTCGATACCATGAGAGACGTCATCGTCTATTTGAGCCTTCACCTCCAATTGCCACATCATAGATCGGAAAAAGGGTTCTGCCGTTTTCATTTCGCGTTAACAATCCCAACTGCCACATCACATTTGAACATCCAATTTGGCTTTCCTTCCGCCGCTGCTTATAAAATCAACTCGTTAAGAGTATCGAAAATCGCGCTCTTCGATTCCCATTGCATATCTCCTCCCCCAAATCTCTCCTCTATCAATCTCGCCGCGTCTTCTTCTCTTACTCGGATTCCTCTTTTTCCTCCGCCGCGGACATTCTTGCAAGAAATTTAG

Protein sequence

MSSTPMLWISVDTMRDVIVYLSLHLQLPHHRSEKGFCRFHFALTIPTATSHLNIQFGFPSAAAYKINSLRVSKIALFDSHCISPPPNLSSINLAASSSLTRIPLFPPPRTFLQEI
Homology
[Close]
BLAST of Csor.00g014860 vs. NCBI nr
Match: KAG6571781.1 (hypothetical protein SDJN03_28509, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232 bits (592), Expect = 6.62e-77
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MSSTPMLWISVDTMRDVIVYLSLHLQLPHHRSEKGFCRFHFALTIPTATSHLNIQFGFPS 60
           MSSTPMLWISVDTMRDVIVYLSLHLQLPHHRSEKGFCRFHFALTIPTATSHLNIQFGFPS
Sbjct: 1   MSSTPMLWISVDTMRDVIVYLSLHLQLPHHRSEKGFCRFHFALTIPTATSHLNIQFGFPS 60

Query: 61  AAAYKINSLRVSKIALFDSHCISPPPNLSSINLAASSSLTRIPLFPPPRTFLQEI 115
           AAAYKINSLRVSKIALFDSHCISPPPNLSSINLAASSSLTRIPLFPPPRTFLQEI
Sbjct: 61  AAAYKINSLRVSKIALFDSHCISPPPNLSSINLAASSSLTRIPLFPPPRTFLQEI 115

[Close]
BLAST of Csor.00g014860 vs. NCBI nr
Match: KAG7011483.1 (hypothetical protein SDJN02_26389, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159 bits (402), Expect = 2.13e-48
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 36  FCRFHFALTIPTATSHLNIQFGFPSAAAYKINSLRVSKIALFDSHCISPPPNLSSINLAA 95
           FCRFHFALTIPTATSHLNIQ GFPSAAAYKINSLRVSKIALFDSHCISPPPNLSSINLAA
Sbjct: 1   FCRFHFALTIPTATSHLNIQVGFPSAAAYKINSLRVSKIALFDSHCISPPPNLSSINLAA 60

Query: 96  SSSLTRIPLFPPPRTFLQEI 115
           SSSLTRIPLFPPPRTFLQEI
Sbjct: 61  SSSLTRIPLFPPPRTFLQEI 80

The following BLAST results are available for this feature:
BLAST of Csor.00g014860 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g014860 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571781.16.62e-77100.00hypothetical protein SDJN03_28509, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011483.12.13e-4898.75hypothetical protein SDJN02_26389, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g014860 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g014860 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g014860.m01Csor.00g014860.m01mRNA