Csor.00g014510 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g014510
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr02: 10385368 .. 10386463 (-)
RNA-Seq Expression	Csor.00g014510
Synteny	Csor.00g014510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTTCACAACAAGAATCTCACTGCACCACACCGAGATCGCTCTCAGGTATAAGCATGGACTGTGCCTGCCTGTCTTTTACTTACTGCTAATGTGCACCACCCAAAACCCAATTGGTTTTCAGCCCACACAGCTCACAGCCCAAAACCCAATTGGTTTTCAGCCCACACAGCTCACAGCCCAAAACCCAATTGGTTTTCAGCCCACTCAGCTCACAGCCCAAAACCCAATTGGTTTACAGCCCACACAGCTCACAGCCCAAAACCCAATTGGTTTTCAGCCCGCACAGCTCACAGCCCAAAACCCAATTCGCTTTCAGCCCACACAGCTCACATCCCAAAACCCAATTGGTTTTCAGCCCACAAGCTCACAGCCCAAAACCCAATTGGTTTTCAGCCCACACAGCTCACAGCCCAAAACCCAATTGGTATTCAGCCCACACAGCTCACAGCCCAAAACCCAATTCGCTTTCAGCCCACACAGCTCACATCCCAAAACCAAATTGGTTTTTTTGTAGGGTTTTGTAATTTTCTAAACCTTAATGCCCCAACCTTCCCTCTCTACTCTCTTCTGAGTTTACTGCATCTTCTGCTTCTTCACCATCCATTTCCCCGCCACGAAACATCTTGCCGCTGATCTTGTCAACGCCCCATTCACATTTCCTCGTCGTCGCCTCCGCCGCCGCCGCTACTAGATTTCGCTGCCACCTGCCCCTCGCCACCAAGTTCAGCTCCATTCTTTAATCTTCTTGCATTTTTTATTCATGTTTTTTCTTCTCTGACGGCCACTGCTTCTCATTTTTTCTCTTTGCCTTTCTGTATTTTCTCATTCCGTCGATGCCCTTTGTATCGTCGATTCGTTGAGCAAAGATGCTCGGTTAAAACTAAACTGAGTTGACGGACCACTGAGCCTCAGTAGGAATTGCAGTAGAATGCCAAGTTTGCTTTTTTTTTTTCTTGCCACTGATTGAATACTACAAACCTCTGGGATCTTCTTGGAATTTTCTACTCAGTATATATCATCCATGTTCTATGACGTAGTGAAAGTATAGAAATTCATAATCTGAACGATGAACTGCAGATTGTTGGGGTAA

mRNA sequence

ATGGCTCTTCACAACAAGAATCTCACTGCACCACACCGAGATCGCTCTCAGTTTACTGCATCTTCTGCTTCTTCACCATCCATTTCCCCGCCACGAAACATCTTGCCGCTGATCTTGTCAACGCCCCATTCACATTTCCTCGTCGTCGCCTCCGCCGCCGCCGCTACTAGATTTCGCTGCCACCTGCCCCTCGCCACCAAATTGTTGGGGTAA

Coding sequence (CDS)

ATGGCTCTTCACAACAAGAATCTCACTGCACCACACCGAGATCGCTCTCAGTTTACTGCATCTTCTGCTTCTTCACCATCCATTTCCCCGCCACGAAACATCTTGCCGCTGATCTTGTCAACGCCCCATTCACATTTCCTCGTCGTCGCCTCCGCCGCCGCCGCTACTAGATTTCGCTGCCACCTGCCCCTCGCCACCAAATTGTTGGGGTAA

Protein sequence

MALHNKNLTAPHRDRSQFTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRCHLPLATKLLG

Homology

[Close]

BLAST of Csor.00g014510 vs. NCBI nr
Match: KAG6606418.1 (hypothetical protein SDJN03_03735, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136 bits (343), Expect = 2.53e-40
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MALHNKNLTAPHRDRSQFTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRC 60
          MALHNKNLTAPHRDRSQFTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRC
Sbjct: 1  MALHNKNLTAPHRDRSQFTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRC 60

Query: 61 HLPLATKLLG 70
          HLPLATKLLG
Sbjct: 61 HLPLATKLLG 70

[Close]

BLAST of Csor.00g014510 vs. NCBI nr
Match: KAG7036356.1 (hypothetical protein SDJN02_03161, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.8 bits (247), Expect = 1.10e-25
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 16 SQFTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRCHLPLATK 67
          S+FTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRCHLPLATK
Sbjct: 8  SEFTASSASSPSISPPRNILPLILSTPHSHFLVVASAAAATRFRCHLPLATK 59

The following BLAST results are available for this feature:

BLAST of Csor.00g014510 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g014510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606418.1	2.53e-40	100.00	hypothetical protein SDJN03_03735, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7036356.1	1.10e-25	98.08	hypothetical protein SDJN02_03161, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Csor.00g014510 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g014510 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g014510.m01	Csor.00g014510.m01	mRNA