Csor.00g013640 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g013640
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	acanthoscurrin-2-like
Location	Csor_Chr02: 9926285 .. 9926776 (+)
RNA-Seq Expression	Csor.00g013640
Synteny	Csor.00g013640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATGAGCTGATTTTGGTTATGGCTATGGCTATGGTTATGGTTGCATTTGCAGGCTGTGTTACTGCAAGAACTGCCCCAAATGATGGGGCGAAAAGCGTCAGTGACCAAAAAAACTTCGTCAACTATGGTGGGGTTGGTGGCTTTTCTGGCATTGGTGACAGTGGACTCCCCTTTGGAGGGGCTGGGGGCGTTGTCGGGTTCGGCGGTGGCAGTGGCATTGGCGGTGGCATTGGTGGACTCGGAGGGGGTGGTGGTTTAGGTGGGCTGGGCGGTGGCATTGGCGGACATGGAGGAGGTGGTGGCTTAGGCGGGCTCAGTGGTGGCATTGGTGGACTTGGAGGGGGTGGTGGCTTAGGCGGGCTCGGTGGTGGCATTGGTGGATACGGTGGGGGTGGTGGCTTAGGCGGGCTCGGCGGTGGCATTGGTGGATATGGTGGGGGCGGTATCGGAATTGGAGTTGGTGGAGGATTTGTCAAGATCCCTTAA

mRNA sequence

ATGGCGAATGAGCTGATTTTGGTTATGGCTATGGCTATGGTTATGGTTGCATTTGCAGGCTGTGTTACTGCAAGAACTGCCCCAAATGATGGGGCGAAAAGCGTCAGTGACCAAAAAAACTTCGTCAACTATGGTGGGGTTGGTGGCTTTTCTGGCATTGGTGACAGTGGACTCCCCTTTGGAGGGGCTGGGGGCGTTGTCGGGTTCGGCGGTGGCAGTGGCATTGGCGGTGGCATTGGTGGACTCGGAGGGGGTGGTGGTTTAGGTGGGCTGGGCGGTGGCATTGGCGGACATGGAGGAGGTGGTGGCTTAGGCGGGCTCAGTGGTGGCATTGGTGGACTTGGAGGGGGTGGTGGCTTAGGCGGGCTCGGTGGTGGCATTGGTGGATACGGTGGGGGTGGTGGCTTAGGCGGGCTCGGCGGTGGCATTGGTGGATATGGTGGGGGCGGTATCGGAATTGGAGTTGGTGGAGGATTTGTCAAGATCCCTTAA

Coding sequence (CDS)

ATGGCGAATGAGCTGATTTTGGTTATGGCTATGGCTATGGTTATGGTTGCATTTGCAGGCTGTGTTACTGCAAGAACTGCCCCAAATGATGGGGCGAAAAGCGTCAGTGACCAAAAAAACTTCGTCAACTATGGTGGGGTTGGTGGCTTTTCTGGCATTGGTGACAGTGGACTCCCCTTTGGAGGGGCTGGGGGCGTTGTCGGGTTCGGCGGTGGCAGTGGCATTGGCGGTGGCATTGGTGGACTCGGAGGGGGTGGTGGTTTAGGTGGGCTGGGCGGTGGCATTGGCGGACATGGAGGAGGTGGTGGCTTAGGCGGGCTCAGTGGTGGCATTGGTGGACTTGGAGGGGGTGGTGGCTTAGGCGGGCTCGGTGGTGGCATTGGTGGATACGGTGGGGGTGGTGGCTTAGGCGGGCTCGGCGGTGGCATTGGTGGATATGGTGGGGGCGGTATCGGAATTGGAGTTGGTGGAGGATTTGTCAAGATCCCTTAA

Protein sequence

MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPFGGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLSGGIGGLGGGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP

Homology

[Close]

BLAST of Csor.00g013640 vs. NCBI nr
Match: KAG6606332.1 (hypothetical protein SDJN03_03649, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036272.1 hypothetical protein SDJN02_03075, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220 bits (561), Expect = 1.19e-70
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60
           MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF
Sbjct: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60

Query: 61  GGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLSGGIGGLGGGGGL 120
           GGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLSGGIGGLGGGGGL
Sbjct: 61  GGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLSGGIGGLGGGGGL 120

Query: 121 GGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP 163
           GGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP
Sbjct: 121 GGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP 163

[Close]

BLAST of Csor.00g013640 vs. NCBI nr
Match: XP_022996355.1 (glycine-rich protein 23-like [Cucurbita maxima])

HSP 1 Score: 211 bits (536), Expect = 8.96e-67
Identity = 161/168 (95.83%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60
           MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF
Sbjct: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60

Query: 61  GGAGGVVGFGGGSGIGG-----GIGGLGGGGGLGGLGGGIGGHGGGGGLGGLSGGIGGLG 120
           GGAGGVVGFGGGSGIGG     GIGGLGGGGGLGGLGGGIGGHGGGGGLGGL GG GGLG
Sbjct: 61  GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGTGGLG 120

Query: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP 163
           GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP
Sbjct: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP 168

[Close]

BLAST of Csor.00g013640 vs. NCBI nr
Match: XP_023532938.1 (acanthoscurrin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209 bits (533), Expect = 2.56e-66
Identity = 160/168 (95.24%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60
           MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF
Sbjct: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60

Query: 61  GGAGGVVGFGGGSGIGG-----GIGGLGGGGGLGGLGGGIGGHGGGGGLGGLSGGIGGLG 120
           GGAGGVVGFGGGSGIGG     GIGGLGGGGGLGGLGGGIGGHGGGGGLGGL GGIGG G
Sbjct: 61  GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGIGGHG 120

Query: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP 163
           GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGG+GIGVGGGFVKIP
Sbjct: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGVGIGVGGGFVKIP 168

[Close]

BLAST of Csor.00g013640 vs. NCBI nr
Match: XP_022931134.1 (acanthoscurrin-2-like [Cucurbita moschata])

HSP 1 Score: 193 bits (490), Expect = 1.68e-59
Identity = 146/163 (89.57%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60
           MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF
Sbjct: 42  MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 101

Query: 61  GGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLSGGIGGLGGGGGL 120
           GGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGL             
Sbjct: 102 GGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGL------------- 161

Query: 121 GGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP 163
              GGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGG FVKIP
Sbjct: 162 ---GGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGRFVKIP 188

[Close]

BLAST of Csor.00g013640 vs. NCBI nr
Match: XP_011652144.1 (glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypothetical protein Csa_000879 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 2.87e-17
Identity = 87/129 (67.44%), Postives = 96/129 (74.42%), Query Frame = 0


Query: 1   MAN-ELILVMAMAMVMVAFAGCVTARTAPND-GAKSVSDQKNFVNYGGVGGFSGIGDSGL 60
           MAN +L L++ MAM M AFA  VTART PND  AK ++DQKNF+NYGGVGGFSGIGDSGL
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61  PFGGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGG------GGGLGG-LSGGI 120
           PFGG           GIGGG  GLGGGGGLGGLGGGIGG GG      GGG+GG + GGI
Sbjct: 61  PFGG-----------GIGGG--GLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGI 116

[Close]

BLAST of Csor.00g013640 vs. ExPASy TrEMBL
Match: A0A6J1K6J1 (glycine-rich protein 23-like OS=Cucurbita maxima OX=3661 GN=LOC111491611 PE=4 SV=1)

HSP 1 Score: 211 bits (536), Expect = 4.34e-67
Identity = 161/168 (95.83%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60
           MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF
Sbjct: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60

Query: 61  GGAGGVVGFGGGSGIGG-----GIGGLGGGGGLGGLGGGIGGHGGGGGLGGLSGGIGGLG 120
           GGAGGVVGFGGGSGIGG     GIGGLGGGGGLGGLGGGIGGHGGGGGLGGL GG GGLG
Sbjct: 61  GGAGGVVGFGGGSGIGGLGGGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLGGGTGGLG 120

Query: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP 163
           GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP
Sbjct: 121 GGGGLGGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP 168

[Close]

BLAST of Csor.00g013640 vs. ExPASy TrEMBL
Match: A0A6J1ETH1 (acanthoscurrin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437404 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 8.16e-60
Identity = 146/163 (89.57%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 1   MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 60
           MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF
Sbjct: 42  MANELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPF 101

Query: 61  GGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGLSGGIGGLGGGGGL 120
           GGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGL             
Sbjct: 102 GGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGGGGGLGGL------------- 161

Query: 121 GGLGGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGGFVKIP 163
              GGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGG FVKIP
Sbjct: 162 ---GGGIGGYGGGGGLGGLGGGIGGYGGGGIGIGVGGRFVKIP 188

[Close]

BLAST of Csor.00g013640 vs. ExPASy TrEMBL
Match: A0A0A0LEM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.39e-17
Identity = 87/129 (67.44%), Postives = 96/129 (74.42%), Query Frame = 0


Query: 1   MAN-ELILVMAMAMVMVAFAGCVTARTAPND-GAKSVSDQKNFVNYGGVGGFSGIGDSGL 60
           MAN +L L++ MAM M AFA  VTART PND  AK ++DQKNF+NYGGVGGFSGIGDSGL
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61  PFGGAGGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGG------GGGLGG-LSGGI 120
           PFGG           GIGGG  GLGGGGGLGGLGGGIGG GG      GGG+GG + GGI
Sbjct: 61  PFGG-----------GIGGG--GLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGI 116

[Close]

BLAST of Csor.00g013640 vs. ExPASy TrEMBL
Match: A0A5A7UCJ9 (Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00690 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.60e-15
Identity = 81/124 (65.32%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 4   ELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPFGGA 63
            L+LVMAMA    A A  V ARTAPN+ AK ++DQKNF+NYGGVGGFSGIGD GLPFGG 
Sbjct: 7   NLMLVMAMA----ALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLPFGG- 66

Query: 64  GGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGG------GGGLGG-LSGGIGGLGG 120
               GFGGG        GLGGGGGLGGLGGG+GG GG      GGG+GG + GGIGG+GG
Sbjct: 67  ----GFGGG--------GLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGG 113

[Close]

BLAST of Csor.00g013640 vs. ExPASy TrEMBL
Match: A0A1S3BI24 (acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.60e-15
Identity = 81/124 (65.32%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 4   ELILVMAMAMVMVAFAGCVTARTAPNDGAKSVSDQKNFVNYGGVGGFSGIGDSGLPFGGA 63
            L+LVMAMA    A A  V ARTAPN+ AK ++DQKNF+NYGGVGGFSGIGD GLPFGG 
Sbjct: 7   NLMLVMAMA----ALALHVAARTAPNEAAKGLNDQKNFLNYGGVGGFSGIGDGGLPFGG- 66

Query: 64  GGVVGFGGGSGIGGGIGGLGGGGGLGGLGGGIGGHGG------GGGLGG-LSGGIGGLGG 120
               GFGGG        GLGGGGGLGGLGGG+GG GG      GGG+GG + GGIGG+GG
Sbjct: 67  ----GFGGG--------GLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGG 113

The following BLAST results are available for this feature:

BLAST of Csor.00g013640 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g013640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606332.1	1.19e-70	100.00	hypothetical protein SDJN03_03649, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022996355.1	8.96e-67	95.83	glycine-rich protein 23-like [Cucurbita maxima]	[more]
XP_023532938.1	2.56e-66	95.24	acanthoscurrin-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022931134.1	1.68e-59	89.57	acanthoscurrin-2-like [Cucurbita moschata]	[more]
XP_011652144.1	2.87e-17	67.44	glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypoth...	[more]

BLAST of Csor.00g013640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K6J1	4.34e-67	95.83	glycine-rich protein 23-like OS=Cucurbita maxima OX=3661 GN=LOC111491611 PE=4 SV...	[more]
A0A6J1ETH1	8.16e-60	89.57	acanthoscurrin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437404 PE=4 SV=1	[more]
A0A0A0LEM4	1.39e-17	67.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1	[more]
A0A5A7UCJ9	1.60e-15	65.32	Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A1S3BI24	1.60e-15	65.32	acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1	[more]

BLAST of Csor.00g013640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..116
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g013640.m01	Csor.00g013640.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane