Csor.00g013220 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g013220
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionLOW QUALITY PROTEIN: protein MOS2-like
LocationCsor_Chr02: 9749493 .. 9750168 (+)
RNA-Seq ExpressionCsor.00g013220
SyntenyCsor.00g013220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTTGTTGTCTTGAGCTGCATTCCCATAATCTGCTTCCATTCTCCACTTCTCGGAGCTCCTCACATGGCTTCGGTTATAGAGTTTCTGTTCTGGTTACCTGTGTTCAAAAGCTTGTCTGTAATTTGTGATCTAAGGATGAACACGAAAGAGGTATCATAGGAGCTTCTTAACGTATGCCTAAATTTATACTGTTTGCCTAAATTTTCTATTGTTTGAATTGCGAGTTGCAGTCTTTGTTAGAACTCTGCAAGGAGACGGAAGATTTCATCAGCCAGGGCAAAAGCACTTGGACATATTGTGCAATCCTACTAGAGGTGAGCATTTTCTGTATAGTTTCTTGGTTAGTTCAGTCACCTATAGGAGCTTGAGTGAGCTTGATTTCATTTTTGTACTTCGCAAATAATTAGAACCTGTCTGCATTATTTATTTGATTGTTCTTATATTGAAGAACGCCTTGATTTTTTCACTATTATTCAAGTCTATGAATGTTTATCAGTCAATGAGCTCAGGACAATATATTTGGATTGGTCTGCAAATGAGCTTGATTTTTTCTCTATTATTCAAATCTATTGGTTTCAATAAGAACATCCTTTCATAAGCCAAACCATATCTTTTGATCAAGCACACCTTTTTTCAGGTTATGGGTTTGGATGCTTTAAAAAGTACCTGA

mRNA sequence

ATGGTTGTTGTTGTCTTGAGCTGCATTCCCATAATCTGCTTCCATTCTCCACTTCTCGGAGCTCCTCACATGGCTTCGGTTATAGAGTTTCTGTTCTGGTTACCTGTGTTCAAAAGCTTGTCTGTAATTTGTGATCTAAGGATGAACACGAAAGAGTCTTTGTTAGAACTCTGCAAGGAGACGGAAGATTTCATCAGCCAGGGCAAAAGCACTTGGACATATTGTGCAATCCTACTAGAGGTTATGGGTTTGGATGCTTTAAAAAGTACCTGA

Coding sequence (CDS)

ATGGTTGTTGTTGTCTTGAGCTGCATTCCCATAATCTGCTTCCATTCTCCACTTCTCGGAGCTCCTCACATGGCTTCGGTTATAGAGTTTCTGTTCTGGTTACCTGTGTTCAAAAGCTTGTCTGTAATTTGTGATCTAAGGATGAACACGAAAGAGTCTTTGTTAGAACTCTGCAAGGAGACGGAAGATTTCATCAGCCAGGGCAAAAGCACTTGGACATATTGTGCAATCCTACTAGAGGTTATGGGTTTGGATGCTTTAAAAAGTACCTGA

Protein sequence

MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLSVICDLRMNTKESLLELCKETEDFISQGKSTWTYCAILLEVMGLDALKST
Homology
[Close]
BLAST of Csor.00g013220 vs. NCBI nr
Match: KAG6606292.1 (hypothetical protein SDJN03_03609, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181 bits (458), Expect = 2.96e-57
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLSVICDLRMNTKESLLELCKE 60
          MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLSVICDLRMNTKESLLELCKE
Sbjct: 1  MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLSVICDLRMNTKESLLELCKE 60

Query: 61 TEDFISQGKSTWTYCAILLEVMGLDALKST 90
          TEDFISQGKSTWTYCAILLEVMGLDALKST
Sbjct: 61 TEDFISQGKSTWTYCAILLEVMGLDALKST 90

[Close]
BLAST of Csor.00g013220 vs. NCBI nr
Match: KAG7036234.1 (Protein MOS2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164 bits (414), Expect = 2.32e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLSVICDLRMNTKESLLELCKE 60
          MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLSVICDLRMNTKESLLELCKE
Sbjct: 1  MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLSVICDLRMNTKESLLELCKE 60

Query: 61 TEDFISQGKSTWTYCAILLEV 81
          TEDFISQGKSTWTYCAILLEV
Sbjct: 61 TEDFISQGKSTWTYCAILLEV 81

[Close]
BLAST of Csor.00g013220 vs. NCBI nr
Match: XP_022931004.1 (LOW QUALITY PROTEIN: protein MOS2-like [Cucurbita moschata])

HSP 1 Score: 131 bits (329), Expect = 2.12e-33
Identity = 69/80 (86.25%), Postives = 69/80 (86.25%), Query Frame = 0 

Query: 1  MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLSVICDLRMNTKESLLELCKE 60
          MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLS           SLLELCKE
Sbjct: 1  MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLS-----------SLLELCKE 60

Query: 61 TEDFISQGKSTWTYCAILLE 80
          TEDFISQGKSTWTYCAILLE
Sbjct: 61 TEDFISQGKSTWTYCAILLE 69

[Close]
BLAST of Csor.00g013220 vs. ExPASy TrEMBL
Match: A0A6J1ET34 (LOW QUALITY PROTEIN: protein MOS2-like OS=Cucurbita moschata OX=3662 GN=LOC111437330 PE=3 SV=1)

HSP 1 Score: 131 bits (329), Expect = 1.02e-33
Identity = 69/80 (86.25%), Postives = 69/80 (86.25%), Query Frame = 0 

Query: 1  MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLSVICDLRMNTKESLLELCKE 60
          MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLS           SLLELCKE
Sbjct: 1  MVVVVLSCIPIICFHSPLLGAPHMASVIEFLFWLPVFKSLS-----------SLLELCKE 60

Query: 61 TEDFISQGKSTWTYCAILLE 80
          TEDFISQGKSTWTYCAILLE
Sbjct: 61 TEDFISQGKSTWTYCAILLE 69

The following BLAST results are available for this feature:
BLAST of Csor.00g013220 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g013220 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6606292.12.96e-57100.00hypothetical protein SDJN03_03609, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7036234.12.32e-45100.00Protein MOS2 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022931004.12.12e-3386.25LOW QUALITY PROTEIN: protein MOS2-like [Cucurbita moschata][more]
BLAST of Csor.00g013220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ET341.02e-3386.25LOW QUALITY PROTEIN: protein MOS2-like OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
BLAST of Csor.00g013220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g013220.m01Csor.00g013220.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding