Csor.00g013000 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g013000
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr02: 9590851 .. 9592565 (+)
RNA-Seq ExpressionCsor.00g013000
SyntenyCsor.00g013000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTGGATGAAGGTGTAGGTTTGTTGTGGAAGTCAAGAACGCACCAGATAAAATCCTTGATCTCTGACAATACTGTCAGAAAGTGGGGCCCTGTCCAGTCAGCAAGGTTTGTGGTTCGGGCATTGACTTCTTCTGCTTAATGCCGTGTCTGTCAGACGGCGTCGTTTCGCTTGCTTTTCAATTCTTATTTTTGTTAAGATGAATCATTATGACTCTAAATTTAATGCTTTTCGTCAATTTCCTTTTCTACCCTTCTTCAATTTTATCCATAATATTTTAGAATTTGATTTTTTTTCTTTCAATTTTAACTTTAATATTTCCATTTTTTTTTGTTATATAAAAAAAAAAAATCAAAATCAATTTTGAGTTCCTATCCTATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATATCAATTCCATGGTTTATGGTATTAATGTGATGTATTTAATTTATGAAAAATACTTTTTGATAAAGTTTGAACCATATTCTTAAATAATTATGGTAAAGTATATTTTTTTAGACATTACTTAAAATGTTGAAACATGTCATTTGAAATGGTGTGCATTATTTATACTTTAATCAAATAGCAGAGATGGATAATAATGTATAGTTAGGTACATTATATTAATGATATATTGGTTCATAAATTCTTATCGATTTAAAATTTTACAAAAAAAATTAGTGATACATCTTTTTACATTAAGCTCGTACGAATTTTGTTAAAAAGAATATTCATACACATTTTATTTATAACCATTTAAATTTTACAATTTGCAAACTCAAAACCTCACAACTAAAAAATCACATATTACGCTTCTCTTTTTTACTCCCGATCCTTCCCGCCAGAAACTCGCCTTTCCCGCCGGGAAACCGCTTCAACCTCCGGGTACGTATTCGTCTCTTCCGAATACCGCTTATCATTCTCATTTTCCATACTCTTTTTGCTCTGATTGATTTAAGAATGGCTTTCGATCTCCAAGTAACTAGTCTGAGAATTCGGTTTTGTATCGTTTGTGATCAGCCTGCTGCTCGTCGAAGGCTTGGTTCTGTGTGTTCGTGATCATGACTATGACCTGAGTTTATTTTTCCGGATTTTGGATTTCCTTCGTGGTTCTGCTATTTTTCGGCGAAGTGATCACATACGGAGGCGTGTACGGAGTGATTTCGGCATGAGATGGTACTGATTCCGACTCTTTGTTTTTTTTGCTCGGAGTATGAACTTTCTTGTAGCCACACAAGATTGTTATTCGCTTCTTTTCAAGCTGATCGCTCTCTTTCCTCATGTTCGCTGAGATCTTGTACATTGTTTGGTTTCAGAAAAGTATCAGAAACGACAAACAATTTTTGTTTGCGTTTTTCACTAAAAAATTCTTGCCTCTTTTATGCAGCTTTCTGACTCGCAGAAAGTCTAAAGAGGAAATGGTTGAGTGGATGAACTTCTCTCTGGCTCGAAACTTTAGAAACTCTTTGTTTTTATCCATCTATTAATCTAATTTTGAATTTAATTTTCAGTTGTGTTTTTCCTCTAAAACTAGGACGCTGGACTTCCGTTTGAACTGTGAAGAATTTAATTGTATTTTAAAACAGATTTATCATAATATTATGTTGAGGTCGAACGCTTGAATTTTAGCAATATCTTATTGAACTGTTGTTTTCATTTTTATAATTCTGTCTCGTGCGGTACAAGTTCAGGTGCACTTACTGGTGA

mRNA sequence

ATGGATGTGGATGAAGGTGTAGAAACTCGCCTTTCCCGCCGGGAAACCGCTTCAACCTCCGGCCTGCTGCTCGTCGAAGGCTTGGTTCTGTGTGTTCGTGATCATGACTATGACCTGAGTTTATTTTTCCGGATTTTGGATTTCCTTCGTGGTTCTGCTATTTTTCGGCGAAGTGATCACATACGGAGGCGTGTACGGAGTGATTTCGGCATGAGATGGTGCACTTACTGGTGA

Coding sequence (CDS)

ATGGATGTGGATGAAGGTGTAGAAACTCGCCTTTCCCGCCGGGAAACCGCTTCAACCTCCGGCCTGCTGCTCGTCGAAGGCTTGGTTCTGTGTGTTCGTGATCATGACTATGACCTGAGTTTATTTTTCCGGATTTTGGATTTCCTTCGTGGTTCTGCTATTTTTCGGCGAAGTGATCACATACGGAGGCGTGTACGGAGTGATTTCGGCATGAGATGGTGCACTTACTGGTGA

Protein sequence

MDVDEGVETRLSRRETASTSGLLLVEGLVLCVRDHDYDLSLFFRILDFLRGSAIFRRSDHIRRRVRSDFGMRWCTYW
Homology
[Close]
BLAST of Csor.00g013000 vs. NCBI nr
Match: KAG6606270.1 (hypothetical protein SDJN03_03587, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (405), Expect = 1.43e-49
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MDVDEGVETRLSRRETASTSGLLLVEGLVLCVRDHDYDLSLFFRILDFLRGSAIFRRSDH 60
          MDVDEGVETRLSRRETASTSGLLLVEGLVLCVRDHDYDLSLFFRILDFLRGSAIFRRSDH
Sbjct: 1  MDVDEGVETRLSRRETASTSGLLLVEGLVLCVRDHDYDLSLFFRILDFLRGSAIFRRSDH 60

Query: 61 IRRRVRSDFGMRWCTYW 77
          IRRRVRSDFGMRWCTYW
Sbjct: 61 IRRRVRSDFGMRWCTYW 77

[Close]
BLAST of Csor.00g013000 vs. NCBI nr
Match: TYK31186.1 (uncharacterized protein E5676_scaffold455G004700 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 4.22e-15
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 0 

Query: 22  LLLVEGLVLCVRDHDYDLSLFFRILDFLRGSA--------IFRRSDHIRRRVRSDFGMRW 73
           LLLVEGL+L VR H+YDLSLFF ILDF+RGS         + RRSDH R+R+R+DF MRW
Sbjct: 76  LLLVEGLILTVRGHNYDLSLFFWILDFVRGSVLSFLLRLFVVRRSDHRRKRIRNDFAMRW 135

[Close]
BLAST of Csor.00g013000 vs. NCBI nr
Match: XP_016903492.1 (PREDICTED: uncharacterized protein LOC107992217 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 2.51e-14
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 22  LLLVEGLVLCVRDHDYDLSLFFRILDFLRGSA--------IFRRSDHIRRRVRSDFGMRW 77
           LLLVEGL+L VR H+YDLSLFF ILDF+RGS         + RRSDH R+R+R+DF MR 
Sbjct: 76  LLLVEGLILTVRGHNYDLSLFFWILDFVRGSVLSFLLRLFVVRRSDHRRKRIRNDFAMRC 135

[Close]
BLAST of Csor.00g013000 vs. ExPASy TrEMBL
Match: A0A5D3E6C4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004700 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.04e-15
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 0 

Query: 22  LLLVEGLVLCVRDHDYDLSLFFRILDFLRGSA--------IFRRSDHIRRRVRSDFGMRW 73
           LLLVEGL+L VR H+YDLSLFF ILDF+RGS         + RRSDH R+R+R+DF MRW
Sbjct: 76  LLLVEGLILTVRGHNYDLSLFFWILDFVRGSVLSFLLRLFVVRRSDHRRKRIRNDFAMRW 135

[Close]
BLAST of Csor.00g013000 vs. ExPASy TrEMBL
Match: A0A1S4E5J6 (uncharacterized protein LOC107992217 OS=Cucumis melo OX=3656 GN=LOC107992217 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.21e-14
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 22  LLLVEGLVLCVRDHDYDLSLFFRILDFLRGSA--------IFRRSDHIRRRVRSDFGMRW 77
           LLLVEGL+L VR H+YDLSLFF ILDF+RGS         + RRSDH R+R+R+DF MR 
Sbjct: 76  LLLVEGLILTVRGHNYDLSLFFWILDFVRGSVLSFLLRLFVVRRSDHRRKRIRNDFAMRC 135

The following BLAST results are available for this feature:
BLAST of Csor.00g013000 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g013000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6606270.11.43e-49100.00hypothetical protein SDJN03_03587, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK31186.14.22e-1563.33uncharacterized protein E5676_scaffold455G004700 [Cucumis melo var. makuwa][more]
XP_016903492.12.51e-1459.38PREDICTED: uncharacterized protein LOC107992217 [Cucumis melo][more]
BLAST of Csor.00g013000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E6C42.04e-1563.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4E5J61.21e-1459.38uncharacterized protein LOC107992217 OS=Cucumis melo OX=3656 GN=LOC107992217 PE=... [more]
BLAST of Csor.00g013000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g013000.m02Csor.00g013000.m02mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane