Csor.00g012730 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g012730
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionAcetyl-CoA carboxylase subunit beta
LocationCsor_Chr02: 9501617 .. 9501949 (+)
RNA-Seq ExpressionCsor.00g012730
SyntenyCsor.00g012730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTAGAAGCTGGGCGTGGGCGTTGGGAGGTTGAGGCGGTAGGAGCATGGAGCTGGCGGGCCTATCTGAATGGACCATAA

mRNA sequence

ATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTAGAAGCTGGGCGTGGGCGTTGGGAGGTTGAGGCGGTAGGAGCATGGAGCTGGCGGGCCTATCTGAATGGACCATAA

Coding sequence (CDS)

ATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTGGAAGCTGGGCGATGGCGTTGGGAGGTTGAGGCGGATATGTTAGAAGCTGGGCGTGGGCGTTGGGAGGTTGAGGCGGTAGGAGCATGGAGCTGGCGGGCCTATCTGAATGGACCATAA

Protein sequence

MLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRGRWEVEAVGAWSWRAYLNGP
Homology
BLAST of Csor.00g012730 vs. NCBI nr
Match: KAG6606244.1 (hypothetical protein SDJN03_03561, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243 bits (620), Expect = 2.44e-81
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEA 60
           MLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEA
Sbjct: 1   MLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEA 60

Query: 61  GRWRWEVEADMLEAGRWRWEVEADMLEAGRGRWEVEAVGAWSWRAYLNGP 110
           GRWRWEVEADMLEAGRWRWEVEADMLEAGRGRWEVEAVGAWSWRAYLNGP
Sbjct: 61  GRWRWEVEADMLEAGRWRWEVEADMLEAGRGRWEVEAVGAWSWRAYLNGP 110

BLAST of Csor.00g012730 vs. NCBI nr
Match: MBN2778671.1 (hypothetical protein [Bacteroidales bacterium])

HSP 1 Score: 85.9 bits (211), Expect = 4.07e-19
Identity = 44/101 (43.56%), Postives = 56/101 (55.45%), Query Frame = 0

Query: 3   EAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGR 62
           E G  +WEV +  LE G W+ EV +  LE G W+WEV       G W+WEV +  LE G 
Sbjct: 3   EVGSGKWEVGSGKLEVGSWKLEVGSWKLEVGSWKWEV-------GSWKWEVGSWKLEVGS 62

Query: 63  WRWEVEADMLEAGRWRWEVEADMLEAGRGRWEVEAVGAWSW 103
            +WEV       G W+WEV +  LE G G+WEV   G+W W
Sbjct: 63  GKWEV-------GSWKWEVGSWKLEVGSGKWEV---GSWKW 86

BLAST of Csor.00g012730 vs. NCBI nr
Match: MBN2778231.1 (hypothetical protein [Bacteroidales bacterium])

HSP 1 Score: 79.7 bits (195), Expect = 8.70e-17
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 0

Query: 2  LEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAG 61
          LE G W+WEV       G W+WEV +  LE G  +WEV       G W+WEV +  LE G
Sbjct: 22 LEVGSWKWEV-------GSWKWEVGSGKLEVGSGKWEV-------GSWKWEVGSWKLEVG 81

Query: 62 RWRWEVEADMLEAGRWRWEVEADMLEAG 89
           W+WEV +   E G W+WEV +  LE G
Sbjct: 82 SWKWEVGSWKWEVGSWKWEVGSWKLEVG 95

BLAST of Csor.00g012730 vs. NCBI nr
Match: KAF3840463.1 (hypothetical protein F7725_006325 [Dissostichus mawsoni])

HSP 1 Score: 85.1 bits (209), Expect = 1.66e-16
Identity = 55/110 (50.00%), Postives = 56/110 (50.91%), Query Frame = 0

Query: 2   LEAGRWRWEVEAD--MLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLE 61
           LEAG WR E  A    LEAG WR E     LEAG WR E     LEAG WR E     LE
Sbjct: 230 LEAGGWRLEAGAGGWRLEAGGWRLEAGGWRLEAGGWRLEAGGWRLEAGGWRLEAGGWRLE 289

Query: 62  AGRWRWEVEADMLEAGRWRWEVEADMLEAGRGRWEVEAVGAWSWRAYLNG 109
           AG WR E     LEAG WR E     LEAG G W +EA G   WR    G
Sbjct: 290 AGGWRLEAGGWRLEAGGWRLEAGGWRLEAGGGGWRLEAGG---WRLEAGG 336

BLAST of Csor.00g012730 vs. NCBI nr
Match: RUS90342.1 (hypothetical protein EGW08_001940, partial [Elysia chlorotica])

HSP 1 Score: 79.0 bits (193), Expect = 3.73e-16
Identity = 55/113 (48.67%), Postives = 60/113 (53.10%), Query Frame = 0

Query: 2   LEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAG 61
           LE G WR E+ A  LE G WR EV A  LE G WR EV    LE G WR  + A   E G
Sbjct: 2   LEVGGWRLELGAWRLEVGGWRLEVGAWSLELGGWRLEVGGWRLEVGAWRLRLGA-WREVG 61

Query: 62  RWRWEVEADMLEAGRWRWEVEADMLEAGRGRWEVEAVGAWS-----WRAYLNG 109
            WR EV A  LE G WR EV A  LE G   W +E +GAWS     WR  + G
Sbjct: 62  GWRLEVGAWRLELGGWRLEVGAWSLELGG--WSLE-LGAWSLEVGGWRLEVGG 110

BLAST of Csor.00g012730 vs. ExPASy TrEMBL
Match: A0A7J5XUK2 (Uncharacterized protein OS=Dissostichus mawsoni OX=36200 GN=F7725_006325 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.05e-17
Identity = 55/110 (50.00%), Postives = 56/110 (50.91%), Query Frame = 0

Query: 2   LEAGRWRWEVEAD--MLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLE 61
           LEAG WR E  A    LEAG WR E     LEAG WR E     LEAG WR E     LE
Sbjct: 230 LEAGGWRLEAGAGGWRLEAGGWRLEAGGWRLEAGGWRLEAGGWRLEAGGWRLEAGGWRLE 289

Query: 62  AGRWRWEVEADMLEAGRWRWEVEADMLEAGRGRWEVEAVGAWSWRAYLNG 109
           AG WR E     LEAG WR E     LEAG G W +EA G   WR    G
Sbjct: 290 AGGWRLEAGGWRLEAGGWRLEAGGWRLEAGGGGWRLEAGG---WRLEAGG 336

BLAST of Csor.00g012730 vs. ExPASy TrEMBL
Match: A0A433U945 (Uncharacterized protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_001940 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.81e-16
Identity = 55/113 (48.67%), Postives = 60/113 (53.10%), Query Frame = 0

Query: 2   LEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAG 61
           LE G WR E+ A  LE G WR EV A  LE G WR EV    LE G WR  + A   E G
Sbjct: 2   LEVGGWRLELGAWRLEVGGWRLEVGAWSLELGGWRLEVGGWRLEVGAWRLRLGA-WREVG 61

Query: 62  RWRWEVEADMLEAGRWRWEVEADMLEAGRGRWEVEAVGAWS-----WRAYLNG 109
            WR EV A  LE G WR EV A  LE G   W +E +GAWS     WR  + G
Sbjct: 62  GWRLEVGAWRLELGGWRLEVGAWSLELGG--WSLE-LGAWSLEVGGWRLEVGG 110

BLAST of Csor.00g012730 vs. ExPASy TrEMBL
Match: A0A7L5FKX0 (Uncharacterized protein OS=Nonlabens sp. Ci31 OX=2608253 GN=F0365_10290 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.53e-15
Identity = 46/105 (43.81%), Postives = 57/105 (54.29%), Query Frame = 0

Query: 1   MLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEA 60
           MLEAG W+ +    MLE G WR E+   MLE G W+ EV    LEAG W+ EV    LEA
Sbjct: 8   MLEAGSWKLDAGGWMLEIGCWRLEIGNWMLEVGSWKLEVGGWKLEAGGWKLEVGGWKLEA 67

Query: 61  GRWRWEVEADMLEAGRWRWEVEADMLEAGRGRWEVEAVGAWSWRA 105
           G W+ E  +  LEAG W+ E          GRW+++A G W   A
Sbjct: 68  GSWKAEAGSWKLEAGGWKLED---------GRWKMDA-GGWKLEA 102

BLAST of Csor.00g012730 vs. ExPASy TrEMBL
Match: A0A4Z2IJG2 (Uncharacterized protein OS=Liparis tanakae OX=230148 GN=EYF80_011720 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.21e-12
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 0

Query: 6   RWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRW 65
           RW+ EV +  LEAG W+ E  +  LEAGRW+ E     LEAGRW+ EV +  LEAG W+ 
Sbjct: 112 RWKLEVGSRKLEAGSWKLEAGSWKLEAGRWKLEAGRWKLEAGRWKPEVGSRKLEAGSWKP 171

Query: 66  EVEADMLEAGRWR 78
           EV +  LEAG W+
Sbjct: 172 EVGSWKLEAGSWK 184

BLAST of Csor.00g012730 vs. ExPASy TrEMBL
Match: A0A3D9KIX7 (Uncharacterized protein OS=Cohnella phaseoli OX=456490 GN=DFP98_103194 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.77e-11
Identity = 41/95 (43.16%), Postives = 52/95 (54.74%), Query Frame = 0

Query: 2   LEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAGRWRWEVEADMLEAG 61
           LE G+ + E     LEAG+ R E     LEAG+ + E     LEAG+ R E E   LEAG
Sbjct: 23  LEVGQQKLETSQQKLEAGQLRLEASQQNLEAGQQKLEASQQKLEAGQLRLETEQQKLEAG 82

Query: 62  RWRWEVEADMLEAGRWRWEVEADMLEAGRGRWEVE 96
           + R E     L+AG+ R E E   LEAG+ R E+E
Sbjct: 83  QLRLEASQQNLDAGQLRLETEQQKLEAGQQRLEIE 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6606244.12.44e-81100.00hypothetical protein SDJN03_03561, partial [Cucurbita argyrosperma subsp. sorori... [more]
MBN2778671.14.07e-1943.56hypothetical protein [Bacteroidales bacterium][more]
MBN2778231.18.70e-1744.32hypothetical protein [Bacteroidales bacterium][more]
KAF3840463.11.66e-1650.00hypothetical protein F7725_006325 [Dissostichus mawsoni][more]
RUS90342.13.73e-1648.67hypothetical protein EGW08_001940, partial [Elysia chlorotica][more]
Match NameE-valueIdentityDescription
A0A7J5XUK28.05e-1750.00Uncharacterized protein OS=Dissostichus mawsoni OX=36200 GN=F7725_006325 PE=4 SV... [more]
A0A433U9451.81e-1648.67Uncharacterized protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_00194... [more]
A0A7L5FKX02.53e-1543.81Uncharacterized protein OS=Nonlabens sp. Ci31 OX=2608253 GN=F0365_10290 PE=4 SV=... [more]
A0A4Z2IJG23.21e-1250.68Uncharacterized protein OS=Liparis tanakae OX=230148 GN=EYF80_011720 PE=4 SV=1[more]
A0A3D9KIX71.77e-1143.16Uncharacterized protein OS=Cohnella phaseoli OX=456490 GN=DFP98_103194 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g012730.m01Csor.00g012730.m01mRNA