Csor.00g011320 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g011320
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Histone H2A
Location	Csor_Chr02: 4986804 .. 4987339 (+)
RNA-Seq Expression	Csor.00g011320
Synteny	Csor.00g011320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTAGCGCAAAGGCAAAGAAAGGCGCCGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGTCGGTTTCTCGATCCGTCAAGGCCGGTCTTCAGTTCCCCGTCGGCCGTATCGCTCGGTATCTGAAGAAAGGGCGCTACTCTCAACGTGTCGGCACTGGCGCTCCAGTCTACTTGGCAGCCGTGATGGAGTATCTAGCCGCTGAAGTAAACGAGTCGTTCATTTCTGATTCCTCTTCATCCTAATCAATAGAATCGCCATTGTACTGATCTTATATTTCTCCGATTTACAGGTTCTTGAATTGGCTGGAAACGCTGCTAGAGACAACAAGAAGAACAGGATCATTCCTAGGCATGTGCTATTGGCGATCAGGAACGACGAGGAACTCGGAAAATTGCTCGCCGGCGTAACTATTGCTAGTGGTGGAGTTCTTCCAAATATTAACCCGATTCTGTTGCCGAAGAAGACAGATAAGGCTGTTAAAGAGCCGAAATCTCCATCAAAGGGCGGAAAGTCGCCGAGCAAGTCGTCTTAA

mRNA sequence

ATGGAGGTTAGCGCAAAGGCAAAGAAAGGCGCCGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGTCGGTTTCTCGATCCGTCAAGGCCGGTCTTCAGTTCCCCGTCGGCCGTATCGCTCGGTATCTGAAGAAAGGGCGCTACTCTCAACGTGTCGGCACTGGCGCTCCAGTCTACTTGGCAGCCGTGATGGAGTATCTAGCCGCTGAAGTTCTTGAATTGGCTGGAAACGCTGCTAGAGACAACAAGAAGAACAGGATCATTCCTAGGCATGTGCTATTGGCGATCAGGAACGACGAGGAACTCGGAAAATTGCTCGCCGGCGTAACTATTGCTAGTGGTGGAGTTCTTCCAAATATTAACCCGATTCTGTTGCCGAAGAAGACAGATAAGGCTGTTAAAGAGCCGAAATCTCCATCAAAGGGCGGAAAGTCGCCGAGCAAGTCGTCTTAA

Coding sequence (CDS)

ATGGAGGTTAGCGCAAAGGCAAAGAAAGGCGCCGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGTCGGTTTCTCGATCCGTCAAGGCCGGTCTTCAGTTCCCCGTCGGCCGTATCGCTCGGTATCTGAAGAAAGGGCGCTACTCTCAACGTGTCGGCACTGGCGCTCCAGTCTACTTGGCAGCCGTGATGGAGTATCTAGCCGCTGAAGTTCTTGAATTGGCTGGAAACGCTGCTAGAGACAACAAGAAGAACAGGATCATTCCTAGGCATGTGCTATTGGCGATCAGGAACGACGAGGAACTCGGAAAATTGCTCGCCGGCGTAACTATTGCTAGTGGTGGAGTTCTTCCAAATATTAACCCGATTCTGTTGCCGAAGAAGACAGATAAGGCTGTTAAAGAGCCGAAATCTCCATCAAAGGGCGGAAAGTCGCCGAGCAAGTCGTCTTAA

Protein sequence

MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPILLPKKTDKAVKEPKSPSKGGKSPSKSS

Homology

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BLAST of Csor.00g011320 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.3e-62
Identity = 126/149 (84.56%), Postives = 137/149 (91.95%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           ME + KAKKG GGR+GG +KKSV+RSVKAGLQFPVGRI RYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   METAGKAKKGFGGRKGGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKK RIIPRH+LLA+RNDEELGKLLAGVT A GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNIN 120

Query: 121 PILLPKKT-DKAVKEPKSPSKGGKSPSKS 149
           P+LLPKKT +KA KEPKSPSK GKSP K+
Sbjct: 121 PVLLPKKTAEKAAKEPKSPSKAGKSPKKA 149

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BLAST of Csor.00g011320 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.7e-61
Identity = 123/148 (83.11%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           M+ S K KKGAGGR+GG +KKSV+RS +AGLQFPVGRI RYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MDASTKTKKGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNIN 120

Query: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKS 149
           PILLPKK +KA    KSPSK  KSP K+
Sbjct: 121 PILLPKKNEKAATTTKSPSKATKSPKKA 148

[Close]

BLAST of Csor.00g011320 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.1e-59
Identity = 124/153 (81.05%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRR-GGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYL 60
           M+ S K KKGAGGR+ GG +KKSV+RS++AGLQFPVGRI RYLKKGRY+QRVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKTDKA---VKEPKSPS-KGGKSPSKS 149
           NP+LLPKKT+++    KEPKSP  K GKSP K+
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

[Close]

BLAST of Csor.00g011320 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.2e-58
Identity = 124/153 (81.05%), Postives = 135/153 (88.24%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRR-GGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYL 60
           M+  AK KKGAG R+ GG KKK VSRSVKAGLQFPVGRI R+LKKGRY+QRVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPILLPKKTDK----AVKEPKSPSKGGKSPSKS 149
           NP+LLPKK +K    A KEPKSP+K  KSP K+
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

[Close]

BLAST of Csor.00g011320 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.5e-58
Identity = 125/153 (81.70%), Postives = 132/153 (86.27%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRR--GGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVY 60
           M+   K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLKKGRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           LAAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIA GGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPILLPKKTDKA---VKEPKSPSKGGKSPSKS 149
           INPILLPKK++KA    K PKSPSK  KSP KS
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of Csor.00g011320 vs. NCBI nr
Match: XP_022947502.1 (histone H2A-like [Cucurbita moschata] >KAG6605479.1 hypothetical protein SDJN03_02796, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035421.1 hypothetical protein SDJN02_02217 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276 bits (707), Expect = 2.41e-93
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA
Sbjct: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149
           PILLPKKTDKAVKEPKSPSKGGKSPSKSS
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

[Close]

BLAST of Csor.00g011320 vs. NCBI nr
Match: XP_023532320.1 (histone H2A-like [Cucurbita pepo subsp. pepo] >XP_023532321.1 histone H2A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275 bits (704), Expect = 6.90e-93
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA
Sbjct: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKS 148
           PILLPKKTDKAVKEPKSPSKGGKSPSKS
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKS 148

[Close]

BLAST of Csor.00g011320 vs. NCBI nr
Match: XP_023006960.1 (histone H2A-like [Cucurbita maxima])

HSP 1 Score: 275 bits (703), Expect = 9.80e-93
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           ME SAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA
Sbjct: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149
           PILLPKKTDKAVKEPKSPSKGGKSPSKSS
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

[Close]

BLAST of Csor.00g011320 vs. NCBI nr
Match: XP_022986957.1 (histone H2A [Cucurbita maxima])

HSP 1 Score: 267 bits (683), Expect = 1.10e-89
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           ME S KAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PILLPKKTDKAVKEPKSPSKGGKSPSK 147
           P+LLPKKTDKA+KEPKSPSK GKSPSK
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSK 147

[Close]

BLAST of Csor.00g011320 vs. NCBI nr
Match: XP_022943937.1 (histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267 bits (683), Expect = 1.10e-89
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           ME S KAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PILLPKKTDKAVKEPKSPSKGGKSPSK 147
           P+LLPKKTDKA+KEPKSPSK GKSPSK
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSK 147

[Close]

BLAST of Csor.00g011320 vs. ExPASy TrEMBL
Match: A0A6J1G6M6 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111451351 PE=3 SV=1)

HSP 1 Score: 276 bits (707), Expect = 1.16e-93
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA
Sbjct: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149
           PILLPKKTDKAVKEPKSPSKGGKSPSKSS
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

[Close]

BLAST of Csor.00g011320 vs. ExPASy TrEMBL
Match: A0A6J1L1N2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111499596 PE=3 SV=1)

HSP 1 Score: 275 bits (703), Expect = 4.74e-93
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           ME SAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA
Sbjct: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149
           PILLPKKTDKAVKEPKSPSKGGKSPSKSS
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

[Close]

BLAST of Csor.00g011320 vs. ExPASy TrEMBL
Match: A0A6J1J904 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111484538 PE=3 SV=1)

HSP 1 Score: 267 bits (683), Expect = 5.32e-90
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           ME S KAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PILLPKKTDKAVKEPKSPSKGGKSPSK 147
           P+LLPKKTDKA+KEPKSPSK GKSPSK
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSK 147

[Close]

BLAST of Csor.00g011320 vs. ExPASy TrEMBL
Match: A0A6J1FUE6 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111448508 PE=3 SV=1)

HSP 1 Score: 267 bits (683), Expect = 5.32e-90
Identity = 142/147 (96.60%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           ME S KAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PILLPKKTDKAVKEPKSPSKGGKSPSK 147
           P+LLPKKTDKA+KEPKSPSK GKSPSK
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSK 147

[Close]

BLAST of Csor.00g011320 vs. ExPASy TrEMBL
Match: A0A1S3BK65 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490586 PE=3 SV=1)

HSP 1 Score: 261 bits (668), Expect = 1.03e-87
Identity = 138/147 (93.88%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PILLPKKTDKAVKEPKSPSKGGKSPSK 147
           P+LLPKKTDK  KEPKSPSK GKSPSK
Sbjct: 121 PVLLPKKTDKGTKEPKSPSKAGKSPSK 147

[Close]

BLAST of Csor.00g011320 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 225.3 bits (573), Expect = 3.2e-59
Identity = 125/153 (81.70%), Postives = 132/153 (86.27%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRR--GGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVY 60
           M+   K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLKKGRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           LAAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIA GGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPILLPKKTDKA---VKEPKSPSKGGKSPSKS 149
           INPILLPKK++KA    K PKSPSK  KSP KS
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of Csor.00g011320 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 211.8 bits (538), Expect = 3.6e-55
Identity = 125/177 (70.62%), Postives = 132/177 (74.58%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRR--GGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVY 60
           M+   K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLKKGRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAV+EYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 IRNDEELGKLLAGVTIASGGVLPNINPILLPKKTDKA---VKEPKSPSKGGKSPSKS 149
           +RNDEELG LL GVTIA GGVLPNINPILLPKK++KA    K PKSPSK  KSP KS
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of Csor.00g011320 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 203.8 bits (517), Expect = 9.9e-53
Identity = 109/147 (74.15%), Postives = 127/147 (86.39%), Query Frame = 0


Query: 2   EVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLAA 61
           + + K  +GAGGR+GG++KKSVS+SVKAGLQFPVGRIARYLKKGRY+ R G+GAPVYLAA
Sbjct: 5   QATTKPTRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAA 64

Query: 62  VMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINP 121
           V+EYLAAEVLELAGNAARDNKKNRI PRH+ LAIRNDEELG+LL GVTIASGGVLPNINP
Sbjct: 65  VLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINP 124

Query: 122 ILLPKKTDKAVKEPKSPSKGGKSPSKS 149
           +LLPKK+  +  + +  S   KSP K+
Sbjct: 125 VLLPKKSTASSSQAEKAS-ATKSPKKA 150

[Close]

BLAST of Csor.00g011320 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-50
Identity = 108/150 (72.00%), Postives = 124/150 (82.67%), Query Frame = 0


Query: 1   MEVSAKAKKGAGGRR--GGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVY 60
           ME + K KK  GGR+  G  K KSVS+S+KAGLQFPVGRI R+LKKGRY+QR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           +AAV+EYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDEELGKLL+GVTIA GGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPILLPKKTDKAVKEPKSPSKGGKSPSKS 149
           IN +LLPKK+     E K+     KSP K+
Sbjct: 121 INSVLLPKKSATKPAEEKATKSPVKSPKKA 150

[Close]

BLAST of Csor.00g011320 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-44
Identity = 87/112 (77.68%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 17  GEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLAAVMEYLAAEVLELAGN 76
           G  KK+ +RS KAGLQFPVGRIAR+LKKG+Y++RVG GAPVYLAAV+EYLAAEVLELAGN
Sbjct: 11  GSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 77  AARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPILLPKKT 129
           AARDNKK RI+PRH+ LA+RNDEEL KLL  VTIA+GGV+PNI+ +LLPKKT
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

The following BLAST results are available for this feature:

BLAST of Csor.00g011320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19177	2.3e-62	84.56	Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1	[more]
Q2HU68	5.7e-61	83.11	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]
Q2HU65	3.1e-59	81.05	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
Q9M531	1.2e-58	81.05	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
Q9LZ46	4.5e-58	81.70	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]

BLAST of Csor.00g011320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947502.1	2.41e-93	100.00	histone H2A-like [Cucurbita moschata] >KAG6605479.1 hypothetical protein SDJN03_...	[more]
XP_023532320.1	6.90e-93	100.00	histone H2A-like [Cucurbita pepo subsp. pepo] >XP_023532321.1 histone H2A-like [...	[more]
XP_023006960.1	9.80e-93	99.33	histone H2A-like [Cucurbita maxima]	[more]
XP_022986957.1	1.10e-89	96.60	histone H2A [Cucurbita maxima]	[more]
XP_022943937.1	1.10e-89	96.60	histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo sub...	[more]

BLAST of Csor.00g011320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G6M6	1.16e-93	100.00	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111451351 PE=3 SV=1	[more]
A0A6J1L1N2	4.74e-93	99.33	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111499596 PE=3 SV=1	[more]
A0A6J1J904	5.32e-90	96.60	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111484538 PE=3 SV=1	[more]
A0A6J1FUE6	5.32e-90	96.60	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111448508 PE=3 SV=1	[more]
A0A1S3BK65	1.03e-87	93.88	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490586 PE=3 SV=1	[more]

BLAST of Csor.00g011320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	3.2e-59	81.70	histone H2A 12	[more]
AT5G02560.2	3.6e-55	70.62	histone H2A 12	[more]
AT5G27670.1	9.9e-53	74.15	histone H2A 7	[more]
AT5G59870.1	1.6e-50	72.00	histone H2A 6	[more]
AT1G51060.1	1.3e-44	77.68	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 50..65 score: 81.37 coord: 65..78 score: 89.46 coord: 21..43 score: 69.98 coord: 79..93 score: 73.78 coord: 107..125 score: 72.98
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 10..130 e-value: 4.9E-79 score: 278.5
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 19..127 e-value: 2.01907E-67 score: 197.943
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 15..96 e-value: 2.0E-14 score: 54.1
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 8..137 e-value: 1.3E-63 score: 214.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..127
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 99..132 e-value: 2.7E-18 score: 65.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..149
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 8..143
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 8..143
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 29..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g011320.m01	Csor.00g011320.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity