Csor.00g011290 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g011290
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr02: 4996958 .. 4997474 (+)
RNA-Seq ExpressionCsor.00g011290
SyntenyCsor.00g011290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAACCAGTATACATTATTTTTGAGGAAGAAGACGAATTATGGCAGCACCTTCAATTCCAATGGGCATGGTTTCAACGTATGTTCGCTCTAGAGTTGCTGGAGGAGCAGCAATTGCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCTCAAGAGTTTGAAATAGATTATAATGGTCTCACGTCGTTTCTCGAAGTGGATCGTTCGTTCTTTTCGCCGTGGAATTGGAACCCTAATTCACCACAAGATAGTGAGAATGCAAGAGGAAACGATCGCATGGTTTTTCAATCACCAGATTCATTCTTTAGCGAGGATCAGGTGATTTCTAATTCTTTCTATTTTTTTCATCCTCAAATTTGATCATTAAAATGTATTTTTAAAATTTTTGTTTTGTTTTAAACAGGATTTGTACAGAAGGATGAGCGGCAAGGATTCCGAGAGTTGA

mRNA sequence

ATGTCTCAACCAGTATACATTATTTTTGAGGAAGAAGACGAATTATGGCAGCACCTTCAATTCCAATGGGCATGGTTTCAACGTATGTTCGCTCTAGAGTTGCTGGAGGAGCAGCAATTGCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCTCAAGAGTTTGAAATAGATTATAATGGTCTCACGTCGTTTCTCGAAGTGGATCGTTCGTTCTTTTCGCCGTGGAATTGGAACCCTAATTCACCACAAGATAGTGAGAATGCAAGAGGAAACGATCGCATGGTTTTTCAATCACCAGATTCATTCTTTAGCGAGGATCAGGATTTGTACAGAAGGATGAGCGGCAAGGATTCCGAGAGTTGA

Coding sequence (CDS)

ATGTCTCAACCAGTATACATTATTTTTGAGGAAGAAGACGAATTATGGCAGCACCTTCAATTCCAATGGGCATGGTTTCAACGTATGTTCGCTCTAGAGTTGCTGGAGGAGCAGCAATTGCCGCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCTCAAGAGTTTGAAATAGATTATAATGGTCTCACGTCGTTTCTCGAAGTGGATCGTTCGTTCTTTTCGCCGTGGAATTGGAACCCTAATTCACCACAAGATAGTGAGAATGCAAGAGGAAACGATCGCATGGTTTTTCAATCACCAGATTCATTCTTTAGCGAGGATCAGGATTTGTACAGAAGGATGAGCGGCAAGGATTCCGAGAGTTGA

Protein sequence

MSQPVYIIFEEEDELWQHLQFQWAWFQRMFALELLEEQQLPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPQEFEIDYNGLTSFLEVDRSFFSPWNWNPNSPQDSENARGNDRMVFQSPDSFFSEDQDLYRRMSGKDSES
Homology
BLAST of Csor.00g011290 vs. NCBI nr
Match: KAG6605482.1 (hypothetical protein SDJN03_02799, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245 bits (625), Expect = 4.90e-81
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0

Query: 1   MSQPVYIIFEEEDELWQHLQFQWAWFQRMFALELLEEQQLPPPPPPPPPPPPPPPPPPPP 60
           MSQPVYIIFEEEDELWQHLQFQWAWFQRMFALELLEEQQLPPPPPPPPPPPPPPPPPPPP
Sbjct: 1   MSQPVYIIFEEEDELWQHLQFQWAWFQRMFALELLEEQQLPPPPPPPPPPPPPPPPPPPP 60

Query: 61  PPPPPPPPPPPPPPQEFEIDYNGLTSFLEVDRSFFSPWNWNPNSPQDSENARGNDRMVFQ 120
           PPPPPPPPPPPPPPQEFEIDYNGLTSFLEVDRSFFSPWNWNPNSPQDSENARGNDRMVFQ
Sbjct: 61  PPPPPPPPPPPPPPQEFEIDYNGLTSFLEVDRSFFSPWNWNPNSPQDSENARGNDRMVFQ 120

Query: 121 SPDSFFSEDQDLYRRMSGKDSES 143
           SPDSFFSEDQDLYRRMSGKDSES
Sbjct: 121 SPDSFFSEDQDLYRRMSGKDSES 143

BLAST of Csor.00g011290 vs. NCBI nr
Match: XP_022148435.1 (uncharacterized protein LOC111017083 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 3.13e-07
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 75  QEFEIDYNGLTSFLEVDRSFFSPWNWNPN-SPQDSENAR-------GNDRMVFQSPDSFF 129
           +  E+DY+ LT+FLE DRSFFSPWNW+PN +P     A        GN RM+F    SFF
Sbjct: 45  EALELDYSRLTAFLEADRSFFSPWNWSPNYAPLQDHRADTFTNFAGGNQRMMFLLG-SFF 104

BLAST of Csor.00g011290 vs. NCBI nr
Match: TQD84532.1 (hypothetical protein C1H46_029920 [Malus baccata])

HSP 1 Score: 53.9 bits (128), Expect = 7.59e-06
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 79  IDYNGLTSFLEVDRSFFSPWNWNPNSPQDSEN-----ARGNDRMVFQSPDSFF 126
           IDY  LTSFLE D SF +PWNWNP++P  S++         D ++FQ P SFF
Sbjct: 60  IDYKRLTSFLEFDNSFLTPWNWNPSAPSTSDSKSSLETTNQDYIMFQ-PGSFF 111

BLAST of Csor.00g011290 vs. NCBI nr
Match: RXH84505.1 (hypothetical protein DVH24_032789 [Malus domestica])

HSP 1 Score: 53.9 bits (128), Expect = 7.59e-06
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 79  IDYNGLTSFLEVDRSFFSPWNWNPNSPQDSEN-----ARGNDRMVFQSPDSFF 126
           IDY  LTSFLE D SF +PWNWNP++P  S++         D ++FQ P SFF
Sbjct: 60  IDYKRLTSFLEFDNSFLTPWNWNPSAPSTSDSKSSLETTNQDYIMFQ-PGSFF 111

BLAST of Csor.00g011290 vs. NCBI nr
Match: RXI04438.1 (hypothetical protein DVH24_038712 [Malus domestica])

HSP 1 Score: 51.2 bits (121), Expect = 4.02e-05
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 79  IDYNGLTSFLEVDRSFFSPWNWNPNSPQDSEN-----ARGNDRMVFQSPDSFFSE 128
           IDY  LTSFLE D SF +PWN NP++P  S++      R  D ++FQ P SFF++
Sbjct: 24  IDYKRLTSFLEFDNSFLTPWNCNPSAPATSDSKSSLETRNQDYIMFQ-PGSFFTD 77

BLAST of Csor.00g011290 vs. ExPASy TrEMBL
Match: A0A6J1D2W9 (uncharacterized protein LOC111017083 OS=Momordica charantia OX=3673 GN=LOC111017083 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.51e-07
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 75  QEFEIDYNGLTSFLEVDRSFFSPWNWNPN-SPQDSENAR-------GNDRMVFQSPDSFF 129
           +  E+DY+ LT+FLE DRSFFSPWNW+PN +P     A        GN RM+F    SFF
Sbjct: 45  EALELDYSRLTAFLEADRSFFSPWNWSPNYAPLQDHRADTFTNFAGGNQRMMFLLG-SFF 104

BLAST of Csor.00g011290 vs. ExPASy TrEMBL
Match: A0A660KUE7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_011451 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.71e-07
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 0

Query: 78  EIDYNGLTSFLEVDRSFFSPWNWNPNSPQ-----DSENARGNDRMVFQSPDSFFS 127
           E+DY  LTSFLEVD SF SPW W P+        D E  RG +RM FQ P SFFS
Sbjct: 109 EVDYPQLTSFLEVDDSFLSPWRWKPDDDDYEDDDDHEEVRGQERMNFQ-PGSFFS 162

BLAST of Csor.00g011290 vs. ExPASy TrEMBL
Match: A0A498IQS9 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032789 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.67e-06
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 79  IDYNGLTSFLEVDRSFFSPWNWNPNSPQDSEN-----ARGNDRMVFQSPDSFF 126
           IDY  LTSFLE D SF +PWNWNP++P  S++         D ++FQ P SFF
Sbjct: 60  IDYKRLTSFLEFDNSFLTPWNWNPSAPSTSDSKSSLETTNQDYIMFQ-PGSFF 111

BLAST of Csor.00g011290 vs. ExPASy TrEMBL
Match: A0A540LE23 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_029920 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.67e-06
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 79  IDYNGLTSFLEVDRSFFSPWNWNPNSPQDSEN-----ARGNDRMVFQSPDSFF 126
           IDY  LTSFLE D SF +PWNWNP++P  S++         D ++FQ P SFF
Sbjct: 60  IDYKRLTSFLEFDNSFLTPWNWNPSAPSTSDSKSSLETTNQDYIMFQ-PGSFF 111

BLAST of Csor.00g011290 vs. ExPASy TrEMBL
Match: A0A498KAD3 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_038712 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.94e-05
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 79  IDYNGLTSFLEVDRSFFSPWNWNPNSPQDSEN-----ARGNDRMVFQSPDSFFSE 128
           IDY  LTSFLE D SF +PWN NP++P  S++      R  D ++FQ P SFF++
Sbjct: 24  IDYKRLTSFLEFDNSFLTPWNCNPSAPATSDSKSSLETRNQDYIMFQ-PGSFFTD 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6605482.14.90e-81100.00hypothetical protein SDJN03_02799, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022148435.13.13e-0750.79uncharacterized protein LOC111017083 [Momordica charantia][more]
TQD84532.17.59e-0650.94hypothetical protein C1H46_029920 [Malus baccata][more]
RXH84505.17.59e-0650.94hypothetical protein DVH24_032789 [Malus domestica][more]
RXI04438.14.02e-0549.09hypothetical protein DVH24_038712 [Malus domestica][more]
Match NameE-valueIdentityDescription
A0A6J1D2W91.51e-0750.79uncharacterized protein LOC111017083 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A660KUE72.71e-0756.36Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_011451 PE=4 SV=1[more]
A0A498IQS93.67e-0650.94Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032789 PE=4 SV=1[more]
A0A540LE233.67e-0650.94Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_029920 PE=4 SV=1[more]
A0A498KAD31.94e-0549.09Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_038712 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g011290.m01Csor.00g011290.m01mRNA