Csor.00g010780 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g010780
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionPentatricopeptide repeat-containing protein mitochondrial
LocationCsor_Chr15: 7934322 .. 7934582 (-)
RNA-Seq ExpressionCsor.00g010780
SyntenyCsor.00g010780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATCAGAGCACCTGCTTGTCCTATGAGAAGCTCAACGGAGTGGCGACCTGGGTAGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGAGTTGTTCCTGCATCAATCTCTCTACCTCCGACGACCACGAAGATCCCGACGAGGCTCACGATCGCCCTCTAATGTACTGCACCTCCACTTCTTCCTCCATCATCCGCAGCTTTGAACCGCTTCCCCCGCCGGTCAACGACGTCGCCAATCTTCCTGTCTGA

mRNA sequence

ATGGAGAATCAGAGCACCTGCTTGTCCTATGAGAAGCTCAACGGAGTGGCGACCTGGGTAGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGAGTTGTTCCTGCATCAATCTCTCTACCTCCGACGACCACGAAGATCCCGACGAGGCTCACGATCGCCCTCTAATGTACTGCACCTCCACTTCTTCCTCCATCATCCGCAGCTTTGAACCGCTTCCCCCGCCGGTCAACGACGTCGCCAATCTTCCTGTCTGA

Coding sequence (CDS)

ATGGAGAATCAGAGCACCTGCTTGTCCTATGAGAAGCTCAACGGAGTGGCGACCTGGGTAGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGAGTTGTTCCTGCATCAATCTCTCTACCTCCGACGACCACGAAGATCCCGACGAGGCTCACGATCGCCCTCTAATGTACTGCACCTCCACTTCTTCCTCCATCATCCGCAGCTTTGAACCGCTTCCCCCGCCGGTCAACGACGTCGCCAATCTTCCTGTCTGA

Protein sequence

MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYCTSTSSSIIRSFEPLPPPVNDVANLPV
Homology
BLAST of Csor.00g010780 vs. NCBI nr
Match: XP_023551548.1 (uncharacterized protein LOC111809337 [Cucurbita pepo subsp. pepo] >XP_023551549.1 uncharacterized protein LOC111809337 [Cucurbita pepo subsp. pepo] >KAG6579314.1 hypothetical protein SDJN03_23762, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175 bits (443), Expect = 4.31e-55
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60
          MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 61 TSTSSSIIRSFEPLPPPVNDVANLPV 86
          TSTSSSIIRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSSIIRSFEPLPPPVNDVANLPV 86

BLAST of Csor.00g010780 vs. NCBI nr
Match: XP_022922222.1 (uncharacterized protein LOC111430272 [Cucurbita moschata] >XP_022922223.1 uncharacterized protein LOC111430272 [Cucurbita moschata])

HSP 1 Score: 174 bits (442), Expect = 6.13e-55
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60
          MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 61 TSTSSSIIRSFEPLPPPVNDVANLPV 86
          TSTSSS+IRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSSVIRSFEPLPPPVNDVANLPV 86

BLAST of Csor.00g010780 vs. NCBI nr
Match: KAG7016815.1 (hypothetical protein SDJN02_21926, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175 bits (443), Expect = 6.63e-55
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1   MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60
           MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC
Sbjct: 15  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 74

Query: 61  TSTSSSIIRSFEPLPPPVNDVANLPV 86
           TSTSSSIIRSFEPLPPPVNDVANLPV
Sbjct: 75  TSTSSSIIRSFEPLPPPVNDVANLPV 100

BLAST of Csor.00g010780 vs. NCBI nr
Match: XP_022972977.1 (uncharacterized protein LOC111471501 [Cucurbita maxima] >XP_022972979.1 uncharacterized protein LOC111471501 [Cucurbita maxima])

HSP 1 Score: 174 bits (440), Expect = 1.24e-54
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60
          MENQSTCL+YEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC
Sbjct: 1  MENQSTCLTYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 61 TSTSSSIIRSFEPLPPPVNDVANLPV 86
          TSTSSSIIRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSSIIRSFEPLPPPVNDVANLPV 86

BLAST of Csor.00g010780 vs. NCBI nr
Match: XP_031742148.1 (uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus])

HSP 1 Score: 170 bits (430), Expect = 1.36e-52
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 1   MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60
           MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYC
Sbjct: 39  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 98

Query: 61  TSTSSSIIRSFEPLPPPVNDVANLPV 86
           TSTSSS+IRSFEPLPPPVNDVANLPV
Sbjct: 99  TSTSSSVIRSFEPLPPPVNDVANLPV 124

BLAST of Csor.00g010780 vs. ExPASy TrEMBL
Match: A0A6J1E5Z9 (uncharacterized protein LOC111430272 OS=Cucurbita moschata OX=3662 GN=LOC111430272 PE=4 SV=1)

HSP 1 Score: 174 bits (442), Expect = 2.97e-55
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60
          MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 61 TSTSSSIIRSFEPLPPPVNDVANLPV 86
          TSTSSS+IRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSSVIRSFEPLPPPVNDVANLPV 86

BLAST of Csor.00g010780 vs. ExPASy TrEMBL
Match: A0A6J1ID63 (uncharacterized protein LOC111471501 OS=Cucurbita maxima OX=3661 GN=LOC111471501 PE=4 SV=1)

HSP 1 Score: 174 bits (440), Expect = 5.99e-55
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60
          MENQSTCL+YEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC
Sbjct: 1  MENQSTCLTYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 61 TSTSSSIIRSFEPLPPPVNDVANLPV 86
          TSTSSSIIRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSSIIRSFEPLPPPVNDVANLPV 86

BLAST of Csor.00g010780 vs. ExPASy TrEMBL
Match: A0A0A0KLU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139175 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 2.01e-53
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 0

Query: 1  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60
          MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60

Query: 61 TSTSSSIIRSFEPLPPPVNDVANLPV 86
          TSTSSS+IRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSSVIRSFEPLPPPVNDVANLPV 86

BLAST of Csor.00g010780 vs. ExPASy TrEMBL
Match: A0A6J1H0Y4 (uncharacterized protein LOC111459420 OS=Cucurbita moschata OX=3662 GN=LOC111459420 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 1.41e-51
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 0

Query: 1  MENQST-CLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMY 60
          MENQS+ CLSYEKLNGVATW+GTSVASAFFASLE CSCINLSTSDDHEDPDEAHDRPLMY
Sbjct: 1  MENQSSACLSYEKLNGVATWLGTSVASAFFASLERCSCINLSTSDDHEDPDEAHDRPLMY 60

Query: 61 CTSTSSSIIRSFEPLPPPVNDVANLPV 86
          CTSTSSS+IRSFEPLPPPVNDVANLPV
Sbjct: 61 CTSTSSSVIRSFEPLPPPVNDVANLPV 87

BLAST of Csor.00g010780 vs. ExPASy TrEMBL
Match: A0A1S3AU63 (uncharacterized protein LOC103482984 OS=Cucumis melo OX=3656 GN=LOC103482984 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 3.91e-51
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 0

Query: 1   MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60
           MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYC
Sbjct: 34  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 93

Query: 61  TSTSSSI-IRSFEPLPPPVNDVANLPV 86
           TSTSSS+ IRSFEPLPPPVNDVANLPV
Sbjct: 94  TSTSSSVVIRSFEPLPPPVNDVANLPV 120

BLAST of Csor.00g010780 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-12
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 3  NQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPL 58
          N ST  S EKL+  A+WV T+V SAFFASLE CSC+NLSTSDD ++ +E+H+RPL
Sbjct: 16 NLSTA-SLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGEESHNRPL 69

BLAST of Csor.00g010780 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 3  NQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTS--DDHEDPDEAHDRPL 58
          N ST  S EK++  A+W+  +V SAFF SLE C+C+NLSTS  DD +D DE+H RPL
Sbjct: 10 NVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDDESHHRPL 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023551548.14.31e-55100.00uncharacterized protein LOC111809337 [Cucurbita pepo subsp. pepo] >XP_023551549.... [more]
XP_022922222.16.13e-5598.84uncharacterized protein LOC111430272 [Cucurbita moschata] >XP_022922223.1 unchar... [more]
KAG7016815.16.63e-55100.00hypothetical protein SDJN02_21926, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022972977.11.24e-5498.84uncharacterized protein LOC111471501 [Cucurbita maxima] >XP_022972979.1 uncharac... [more]
XP_031742148.11.36e-5295.35uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1E5Z92.97e-5598.84uncharacterized protein LOC111430272 OS=Cucurbita moschata OX=3662 GN=LOC1114302... [more]
A0A6J1ID635.99e-5598.84uncharacterized protein LOC111471501 OS=Cucurbita maxima OX=3661 GN=LOC111471501... [more]
A0A0A0KLU32.01e-5395.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139175 PE=4 SV=1[more]
A0A6J1H0Y41.41e-5194.25uncharacterized protein LOC111459420 OS=Cucurbita moschata OX=3662 GN=LOC1114594... [more]
A0A1S3AU633.91e-5194.25uncharacterized protein LOC103482984 OS=Cucumis melo OX=3656 GN=LOC103482984 PE=... [more]
Match NameE-valueIdentityDescription
AT4G10810.11.3e-1263.64unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G24026.11.9e-1156.14unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34061:SF19OS10G0502100 PROTEINcoord: 2..63
NoneNo IPR availablePANTHERPTHR34061PROTEIN, PUTATIVE-RELATEDcoord: 2..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g010780.m01Csor.00g010780.m01mRNA