Csor.00g010310 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g010310
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionTrafficking protein particle complex subunit
LocationCsor_Chr15: 8533400 .. 8536579 (-)
RNA-Seq ExpressionCsor.00g010310
SyntenyCsor.00g010310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTTCTTTGGTGGCTCAGAGATTAGCCCTTCGCCTACTGTCCCGACAGCAACTGGAAACAATGTGAATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCGCTCAAATCCTTTACTGCTAAGATGGACCCAACCAGGTTTATCTTTCTTCCTTAACTGGGAAACTACATTGGCTTGTGGCATGCCTGGTTAAAGTAATTGATCCAGCAAGATAGGAGATAATGCGAACTATATTTTTATGTCTTAATAACTTGACAAATGCATTGCTATTTATGGTCGGTGGCATAACCAATAATGTCTAATTTGATTGTAGATTTTGGTTTTGAATTTTCAAAGTCTTATCTTATTGGGAAGTGATGAGCTGCTTTTGGGAGTTTATTTTGAATTTTTCCTTTTTTTGGTACAGTGCTGATAAAGGCAATCTTGGTGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACGAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGGTTTCTATCTCCTTCCCTCTTTTGTTCTTTTATATATTTGACATTTTAGTTTCATGCATGTCTACTTGAATCGCTAAGTTAAGTTTCTTGATATATGGCATGAGCAGAGAAGACTGCAAATGGATTATTGAGATTTAATGAAACCAATATTTGGGTCATTGATTTGCCTATTTATTGCTATTATCATTGTTATTTGACAAGGTAGATGGGGGTTTTAAAGGTTTGGACTCTTTCTTCTTTGAACTTGTTGTGTCACATGGATTAATTAAGTTCTGATTCATAGCCTCATGAAATGTTTTTGTTTTCTTTCTTGTTCTTATGAAGTTACAGTTTTCTTGGTGATGATTAGTACTTCCAATGAATCTCTTTTTTTGCTTCTTGTTTTATATCTTGAAGAGTTAAGGATGGACTTTTGGAAGAAGCCCTTTGAAGCTGCTGTTTTAAAATTGTTTCTGTTTTGAAAAATAATTAACTGGAGGTGCAAAAGGGGGATTCTTGGCATTCACTGTAGGGTCACTATGCTTGAGATTGATAGATTAGCTTGAAGTTCGGTTTTGTGAGCATTGATGGATTATTTCCTTGTTTCAGATTATCCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACTCGTTGAAGTACATTTACAACTTGTATGTTGAATACGTTGTGAAAAATCCTCTCTACAGTCCAGGAACCCCAATCAGGTAAAGTGAAAGCTTTGGTCGATGCATATGTCCTATATACCAACTGTAGTAATTTAATCAAAGAAACACAGTTCAAAGCCTAATAGAATAAAATCTACATCTTTGATGAATTTGAATTTGTAATGCATGCATCCAGTGGTTTCAGTTTAATTAAGATCAAATGATGTCTGGCATAAGGGAATTTATTATTGGTTCTTAACCTTAACTATAACTACTTTAAGTCTATCTGAGAGGCCTTTTCAGGGATCTTTTAGGCTTTACTAGGTTCTCCCTTTAGACTAAATTACAACTTTAGTTCCTGGGGTTCAGCTTGGTTTTAATTTGGTTGCTGTGATCTAAAAGTTTCACTGTAGTCCCTGTGATTTGGTTAAATCTCTCAAAAAGTCTGTGTGATTACCATATGTTAGTAGTTTTCTGACTTCCCATGCTTCTTTATTTTTCATTTTTTTGAAATTTAATATTTTTTTCCTTTTTCTTTTTAACGTGGATAAGGGAGACAATAAGTTTACTTTAAGCATAAGGCATGGTTAAATATTCCATTGGCTAACCATATTAAAGTTTGAATTGGGTGAAAAAATATAAGAAATTGGGTGAGTGTTCAGCTAAAGACAACAATATTGTGTATCAAAGGGGTCGATTTTGGACTTGGGTTTCTTTAAAAGTGGGTGATTTATGTCGAAAGTTCGGCTGCAAAACTTGCTTTCCTCTATTTCTGAACTCACTCAACTCAAACCATAATTCAATCAACAATTTAACCTTTAGATATTCCTTACATTGAATGGTAGCACATAGCCCTTGTTTTTCACTTCCGATGAAAAATAGTTTTGTTAGAAAATTATTAGCACCCAATTAGAGTAGATACATTTAAAGGAGGTTGAACTGAGCTATGGGGACTAAAATGTTAATTTAACCCTTCTTTACCAAAAAGTTGTACATTAGAGAATATTCCTGAAGTTTTCCTGTTTACTCTTTTTAGCAAAAGATTTGAAATGTTTTTATATCTTATTTACGGACTTAACCCACCCTCTCAATCAGTGCATACTTGCTATGATATAGTTTTTATGATGAAAATAAAGTTATTACTGTTTGTCCAGGCAACGCAGTATCGACTCTCCCTCGAGGCCTTGATTAATCATTTGATTTTGCTTTATGCAGGTGTGAGCTATTCAGTACAAGTCTTGACCAATATGTAAGGACTATATTATAGAAATCAAAGGTAGTGACTGCTTTGCCGTTTTAGTTTCATTTACGTCGTATGCTTTGTCTCTTGTTGATGATTGAATACATTTCACTGAACAATGGTGCAGTTTCAGGCGATTAAAATGCTTACCTGGGATTTTCTCTGTGTATTCCATCGCTTGGAATGAGAGTGTACCGGTATAAATTCTTCTAATGTACTTTTTTCCATTATTCTATGTCCCTGCACTTTGTGGTAACTTCTCTGTGATAGTGGTGGAAGAAAAAAAGACTCTAGTACAAACGTTTGCTGCCCATGTATGATTTGTAGTAATGCATTTGTAGTTCTTTTTTCGTATACATTCGTACCATACATTAGGTACAAAAAAATGTGAAAGGTCTTAAACAGGAAAGTATTATGTTCAATTACCTTCTTAACCTCTCCCACCCTTTCATTGTCTCTTCATCAATTTCTTTGGTATTTGTTTCAACCCTAGGATGCACTACCCTTGAAAATGTAGGAAGATTGTCGTACTATAACTCTTCCTCGGACCCCAATGAACCCAAATTGTTGGGAATGGATCTTGGTACTTTTAAGGTTGATAGCCCTCGCTTTGGTTCCTGATGTCGAGGCAATTAAGTTCTTGTTGCTTGGCACGAGCGATTGTGCGCTCGGCATAATCACGTGA

mRNA sequence

ATGCAGTTCTTTGGTGGCTCAGAGATTAGCCCTTCGCCTACTGTCCCGACAGCAACTGGAAACAATGTGAATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCGCTCAAATCCTTTACTGCTAAGATGGACCCAACCAGTGCTGATAAAGGCAATCTTGGTGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACGAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATCCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACTCGTTGAAGTACATTTACAACTTGTATGTTGAATACGTTGTGAAAAATCCTCTCTACAGTCCAGGAACCCCAATCAGGTGTGAGCTATTCAGTACAAGTCTTGACCAATATGAAGATTGTCGTACTATAACTCTTCCTCGGACCCCAATGAACCCAAATTGTTGGGAATGGATCTTGGTACTTTTAAGGTTGATAGCCCTCGCTTTGGTTCCTGATGTCGAGGCAATTAAGTTCTTGTTGCTTGGCACGAGCGATTGTGCGCTCGGCATAATCACGTGA

Coding sequence (CDS)

ATGCAGTTCTTTGGTGGCTCAGAGATTAGCCCTTCGCCTACTGTCCCGACAGCAACTGGAAACAATGTGAATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCGCTCAAATCCTTTACTGCTAAGATGGACCCAACCAGTGCTGATAAAGGCAATCTTGGTGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACGAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATCCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACTCGTTGAAGTACATTTACAACTTGTATGTTGAATACGTTGTGAAAAATCCTCTCTACAGTCCAGGAACCCCAATCAGGTGTGAGCTATTCAGTACAAGTCTTGACCAATATGAAGATTGTCGTACTATAACTCTTCCTCGGACCCCAATGAACCCAAATTGTTGGGAATGGATCTTGGTACTTTTAAGGTTGATAGCCCTCGCTTTGGTTCCTGATGTCGAGGCAATTAAGTTCTTGTTGCTTGGCACGAGCGATTGTGCGCTCGGCATAATCACGTGA

Protein sequence

MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYEDCRTITLPRTPMNPNCWEWILVLLRLIALALVPDVEAIKFLLLGTSDCALGIIT
Homology
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BLAST of Csor.00g010310 vs. ExPASy Swiss-Prot
Match: Q557G3 (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=trappc1-1 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.9e-29
Identity = 58/140 (41.43%), Postives = 88/140 (62.86%), Query Frame = 0 

Query: 26  MYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLGVPQ 85
           +YIFN++G C++Y +WN+  ++ N  +D KL+FG+L+SLK+F     P   D        
Sbjct: 5   IYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID-------- 64

Query: 86  LPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYVVKNP 145
                  FH ++T+TYKL + ET S IK I+++ P   DLRD LK IY+ ++VEYV+KNP
Sbjct: 65  ---DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNP 124

Query: 146 LYSPGTPIRCELFSTSLDQY 165
           +Y  GT ++C+ F   L+ Y
Sbjct: 125 IYKHGTTVKCDTFINQLNLY 133

[Close]
BLAST of Csor.00g010310 vs. ExPASy Swiss-Prot
Match: Q5NCF2 (Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.1e-28
Identity = 64/144 (44.44%), Postives = 93/144 (64.58%), Query Frame = 0 

Query: 23  VNMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           V+ +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPLYSPGTPIRCELFSTSLDQY 165
           VKNPL   G  ++ ELF + LD Y
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSY 133

[Close]
BLAST of Csor.00g010310 vs. ExPASy Swiss-Prot
Match: Q2KMM2 (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.1e-28
Identity = 64/144 (44.44%), Postives = 93/144 (64.58%), Query Frame = 0 

Query: 23  VNMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           V+ +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPLYSPGTPIRCELFSTSLDQY 165
           VKNPL   G  ++ ELF + LD Y
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSY 133

[Close]
BLAST of Csor.00g010310 vs. ExPASy Swiss-Prot
Match: Q17QI1 (Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.6e-27
Identity = 63/144 (43.75%), Postives = 92/144 (63.89%), Query Frame = 0 

Query: 23  VNMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           V+ +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPLYSPGTPIRCELFSTSLDQY 165
           VKNPL   G  ++ ELF + LD Y
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSY 133

[Close]
BLAST of Csor.00g010310 vs. ExPASy Swiss-Prot
Match: Q9Y5R8 (Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.6e-27
Identity = 63/144 (43.75%), Postives = 92/144 (63.89%), Query Frame = 0 

Query: 23  VNMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           V+ +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPLYSPGTPIRCELFSTSLDQY 165
           VKNPL   G  ++ ELF + LD Y
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSY 133

[Close]
BLAST of Csor.00g010310 vs. NCBI nr
Match: KAG6579361.1 (Trafficking protein particle complex subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 457 bits (1175), Expect = 2.13e-162
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYEDCRTITLPRTPMNPN 180
           RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYEDCRTITLPRTPMNPN
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYEDCRTITLPRTPMNPN 180

Query: 181 CWEWILVLLRLIALALVPDVEAIKFLLLGTSDCALGIIT 219
           CWEWILVLLRLIALALVPDVEAIKFLLLGTSDCALGIIT
Sbjct: 181 CWEWILVLLRLIALALVPDVEAIKFLLLGTSDCALGIIT 219

[Close]
BLAST of Csor.00g010310 vs. NCBI nr
Match: XP_022922155.1 (trafficking protein particle complex subunit 1-like [Cucurbita moschata] >XP_022922156.1 trafficking protein particle complex subunit 1-like [Cucurbita moschata] >XP_022922157.1 trafficking protein particle complex subunit 1-like [Cucurbita moschata] >XP_022973065.1 trafficking protein particle complex subunit 1-like [Cucurbita maxima] >XP_022973067.1 trafficking protein particle complex subunit 1-like [Cucurbita maxima] >XP_022973068.1 trafficking protein particle complex subunit 1-like [Cucurbita maxima] >XP_023549605.1 trafficking protein particle complex subunit 1-like [Cucurbita pepo subsp. pepo] >XP_023549606.1 trafficking protein particle complex subunit 1-like [Cucurbita pepo subsp. pepo] >XP_023549607.1 trafficking protein particle complex subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348 bits (892), Expect = 5.02e-120
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY 164
           RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY 164

[Close]
BLAST of Csor.00g010310 vs. NCBI nr
Match: KAA0042588.1 (trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa] >TYK05991.1 trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 348 bits (894), Expect = 5.88e-119
Identity = 179/246 (72.76%), Postives = 186/246 (75.61%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYE--------------- 180
           RTGDLRD LKYIYNLYVEYVVKNPLYSPGTPIRCELF+TSLDQY                
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYLQAIKMPTWEFLFVFY 180

Query: 181 --DCRTI------------TLPRTPMNPNCWEWILVLLRLIALALVPDVEAIKFLLLGTS 217
             DCR              T  RT ++  C  +          AL+PDV  +KFLL G  
Sbjct: 181 WFDCRQCNGELTEEFFAMTTYIRTRLDKFCASF----------ALIPDVYQLKFLLPGMC 236

[Close]
BLAST of Csor.00g010310 vs. NCBI nr
Match: XP_038906999.1 (trafficking protein particle complex subunit 1 [Benincasa hispida] >XP_038907000.1 trafficking protein particle complex subunit 1 [Benincasa hispida])

HSP 1 Score: 340 bits (872), Expect = 5.42e-117
Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPT TGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTTTGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY 164
           RTGDLRDSLKYIYNLYVEYVVKNP+YSPGTPIRCELF+TSLDQY
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQY 164

[Close]
BLAST of Csor.00g010310 vs. NCBI nr
Match: XP_004145907.1 (trafficking protein particle complex subunit 1 [Cucumis sativus] >XP_031741655.1 trafficking protein particle complex subunit 1 [Cucumis sativus] >KGN49914.1 hypothetical protein Csa_000153 [Cucumis sativus])

HSP 1 Score: 340 bits (871), Expect = 7.97e-117
Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY 164
           RTGDLRD LKYIYNLYVEYVVKNP+YSPGTPIRCELF+TSLDQY
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQY 164

[Close]
BLAST of Csor.00g010310 vs. ExPASy TrEMBL
Match: A0A6J1IAE9 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111471566 PE=3 SV=1)

HSP 1 Score: 348 bits (892), Expect = 2.43e-120
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY 164
           RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY 164

[Close]
BLAST of Csor.00g010310 vs. ExPASy TrEMBL
Match: A0A6J1E2F4 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111430218 PE=3 SV=1)

HSP 1 Score: 348 bits (892), Expect = 2.43e-120
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY 164
           RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY 164

[Close]
BLAST of Csor.00g010310 vs. ExPASy TrEMBL
Match: A0A5D3C227 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00870 PE=3 SV=1)

HSP 1 Score: 348 bits (894), Expect = 2.85e-119
Identity = 179/246 (72.76%), Postives = 186/246 (75.61%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYE--------------- 180
           RTGDLRD LKYIYNLYVEYVVKNPLYSPGTPIRCELF+TSLDQY                
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYLQAIKMPTWEFLFVFY 180

Query: 181 --DCRTI------------TLPRTPMNPNCWEWILVLLRLIALALVPDVEAIKFLLLGTS 217
             DCR              T  RT ++  C  +          AL+PDV  +KFLL G  
Sbjct: 181 WFDCRQCNGELTEEFFAMTTYIRTRLDKFCASF----------ALIPDVYQLKFLLPGMC 236

[Close]
BLAST of Csor.00g010310 vs. ExPASy TrEMBL
Match: A0A0A0KM26 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_5G139910 PE=3 SV=1)

HSP 1 Score: 340 bits (871), Expect = 3.86e-117
Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY 164
           RTGDLRD LKYIYNLYVEYVVKNP+YSPGTPIRCELF+TSLDQY
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQY 164

[Close]
BLAST of Csor.00g010310 vs. ExPASy TrEMBL
Match: A0A1S3AUA1 (Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC103482924 PE=3 SV=1)

HSP 1 Score: 339 bits (869), Expect = 7.79e-117
Identity = 159/164 (96.95%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY 164
           RTGDLRD LKYIYNLYVEYVVKNPLYSPGTPIRCELF+TSLDQY
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQY 164

[Close]
BLAST of Csor.00g010310 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 314.7 bits (805), Expect = 5.9e-86
Identity = 143/164 (87.20%), Postives = 156/164 (95.12%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTA+GNN +MMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY 165
           +TGDLR+SLKYIY+LYVEYVVKNP+YSPG+PI+ ELF+T+LDQY
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQY 164

[Close]
BLAST of Csor.00g010310 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 314.7 bits (805), Expect = 5.9e-86
Identity = 143/164 (87.20%), Postives = 156/164 (95.12%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTA+GNN +MMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQY 165
           +TGDLR+SLKYIY+LYVEYVVKNP+YSPG+PI+ ELF+T+LDQY
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQY 164

[Close]
BLAST of Csor.00g010310 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-13
Identity = 42/139 (30.22%), Postives = 65/139 (46.76%), Query Frame = 0 

Query: 26  MYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLGVPQ 85
           +YI N++G  +FY++     R      D   +  L  S+ + + ++ P +          
Sbjct: 7   LYIINKSGGLIFYKDCGTKGRM--DTNDSLRVASLWHSMHAISQQLSPVN---------- 66

Query: 86  LPGQGCS-FHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNP 145
               GCS       +T+ L   ++  G K  +V  P T  +   L+YIY LY +YV+KNP
Sbjct: 67  ----GCSGIELLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNP 126

Query: 146 LYSPGTPIRCELFSTSLDQ 164
            Y    PIRCELF  +L Q
Sbjct: 127 FYEIEMPIRCELFDINLTQ 129

The following BLAST results are available for this feature:
BLAST of Csor.00g010310 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q557G32.9e-2941.43Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44... [more]
Q5NCF27.1e-2844.44Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trapp... [more]
Q2KMM27.1e-2844.44Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=... [more]
Q17QI14.6e-2743.75Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 ... [more]
Q9Y5R84.6e-2743.75Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC... [more]
BLAST of Csor.00g010310 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579361.12.13e-162100.00Trafficking protein particle complex subunit 1, partial [Cucurbita argyrosperma ... [more]
XP_022922155.15.02e-120100.00trafficking protein particle complex subunit 1-like [Cucurbita moschata] >XP_022... [more]
KAA0042588.15.88e-11972.76trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa] >TYK05... [more]
XP_038906999.15.42e-11796.95trafficking protein particle complex subunit 1 [Benincasa hispida] >XP_038907000... [more]
XP_004145907.17.97e-11796.95trafficking protein particle complex subunit 1 [Cucumis sativus] >XP_031741655.1... [more]
BLAST of Csor.00g010310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IAE92.43e-120100.00Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1E2F42.43e-120100.00Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A5D3C2272.85e-11972.76Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194... [more]
A0A0A0KM263.86e-11796.95Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_5... [more]
A0A1S3AUA17.79e-11796.95Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC10348... [more]
BLAST of Csor.00g010310 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G51160.15.9e-8687.20SNARE-like superfamily protein [more]
AT1G51160.25.9e-8687.20SNARE-like superfamily protein [more]
AT5G02280.15.1e-1330.22SNARE-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 23..168
e-value: 1.9E-59
score: 213.5
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 24..164
e-value: 1.1E-46
score: 158.3
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNITcoord: 1..164
NoneNo IPR availableGENE3D3.30.450.70coord: 22..170
e-value: 2.6E-46
score: 159.2
NoneNo IPR availablePANTHERPTHR23249:SF18TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1-LIKEcoord: 1..164
NoneNo IPR availableCDDcd14855TRAPPC1_MUM2coord: 26..164
e-value: 1.53682E-70
score: 209.325
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 23..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g010310.m01Csor.00g010310.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016020 membrane
cellular_component GO:0030008 TRAPP complex