Csor.00g009850 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g009850
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr08: 54822 .. 55121 (+)
RNA-Seq Expression	Csor.00g009850
Synteny	Csor.00g009850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCCATTAACCCTACACATGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAAAGGCAAGCATGGTGGAGGAGACTGTAGAAAGAGAGACTGAGAATGAAGGAAAAGTTAAAATAACTGAAAAGGTGAGGGTTGGGTTGTTTGATTTGCTTATGTCCTGTATGATCAACTCTGCAGAGTACAACCAAAAGGGATACACAAAACTATTTGAATCAGCCAATTTTGGTACACTCTCTTCTCATAATGGGGGATGTGATGGGTGA

mRNA sequence

ATGAATTCCATTAACCCTACACATGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAAAGGCAAGCATGGTGGAGGAGACTGTAGAAAGAGAGACTGAGAATGAAGGAAAAGTTAAAATAACTGAAAAGGTGAGGGTTGGGTTGTTTGATTTGCTTATGTCCTGTATGATCAACTCTGCAGAGTACAACCAAAAGGGATACACAAAACTATTTGAATCAGCCAATTTTGGTACACTCTCTTCTCATAATGGGGGATGTGATGGGTGA

Coding sequence (CDS)

ATGAATTCCATTAACCCTACACATGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAAAGGCAAGCATGGTGGAGGAGACTGTAGAAAGAGAGACTGAGAATGAAGGAAAAGTTAAAATAACTGAAAAGGTGAGGGTTGGGTTGTTTGATTTGCTTATGTCCTGTATGATCAACTCTGCAGAGTACAACCAAAAGGGATACACAAAACTATTTGAATCAGCCAATTTTGGTACACTCTCTTCTCATAATGGGGGATGTGATGGGTGA

Protein sequence

MNSINPTHEEEEEEEEEEEEEEEEEEEEEAKASMVEETVERETENEGKVKITEKVRVGLFDLLMSCMINSAEYNQKGYTKLFESANFGTLSSHNGGCDG

Homology

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BLAST of Csor.00g009850 vs. NCBI nr
Match: KAG6592810.1 (hypothetical protein SDJN03_12286, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166 bits (421), Expect = 2.50e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MNSINPTHEEEEEEEEEEEEEEEEEEEEEAKASMVEETVERETENEGKVKITEKVRVGLF 60
          MNSINPTHEEEEEEEEEEEEEEEEEEEEEAKASMVEETVERETENEGKVKITEKVRVGLF
Sbjct: 1  MNSINPTHEEEEEEEEEEEEEEEEEEEEEAKASMVEETVERETENEGKVKITEKVRVGLF 60

Query: 61 DLLMSCMINSAEYNQKGYTKLFESANFGTLSSHNGGCDG 99
          DLLMSCMINSAEYNQKGYTKLFESANFGTLSSHNGGCDG
Sbjct: 61 DLLMSCMINSAEYNQKGYTKLFESANFGTLSSHNGGCDG 99

The following BLAST results are available for this feature:

BLAST of Csor.00g009850 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g009850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592810.1	2.50e-51	100.00	hypothetical protein SDJN03_12286, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g009850 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g009850 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g009850.m01	Csor.00g009850.m01	mRNA