Csor.00g009780 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g009780
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	LITAF domain-containing protein
Location	Csor_Chr08: 89989 .. 90370 (-)
RNA-Seq Expression	Csor.00g009780
Synteny	Csor.00g009780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTTCTTCATCTGGTTATCATACTTCGTGACCTCTACAGATCAAAGGTAAGTTCAGCTGCTGTGGTTGGTTGTATGACTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCACTGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTATGACTATTTCCGGTCATCTTTCATTCTGTCAGTTGCTTCTTGTAATCTACATGTTGATTATTTGACACTTCGCTCTGTTATAGACAATTGGAGTAATTAACTATGCTATCTATCTTTTGTTTAGGTGGGTGATTTTGAGAAATTTGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCTTTGCGTTGCCTGCTTGA

mRNA sequence

ATGTTTGTTCTTCATCTGGTTATCATACTTCGTGACCTCTACAGATCAAAGGTAAGTTCAGCTGCTGTGGTTGGTTGTATGACTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCACTGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTGGGTGATTTTGAGAAATTTGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCTTTGCGTTGCCTGCTTGA

Coding sequence (CDS)

ATGTTTGTTCTTCATCTGGTTATCATACTTCGTGACCTCTACAGATCAAAGGTAAGTTCAGCTGCTGTGGTTGGTTGTATGACTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCACTGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTGGGTGATTTTGAGAAATTTGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCTTTGCGTTGCCTGCTTGA

Protein sequence

MFVLHLVIILRDLYRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSNWTQQSFALPA

Homology

[Close]

BLAST of Csor.00g009780 vs. ExPASy Swiss-Prot
Match: Q94CD4 (GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.1e-24
Identity = 48/70 (68.57%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 15  RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 74
           RSK   AAVV CM P MLG CFLCPS+DCLW+K H+CP C  KV DFEK D C VMDP  
Sbjct: 65  RSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVMDPPQ 124

Query: 75  WTQQSFALPA 85
           W Q SFALPA
Sbjct: 125 WKQPSFALPA 134

[Close]

BLAST of Csor.00g009780 vs. NCBI nr
Match: KAG6592817.1 (GSH-induced LITAF domain protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183 bits (465), Expect = 1.64e-58
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MFVLHLVIILRDLYRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGD 60
          MFVLHLVIILRDLYRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGD
Sbjct: 1  MFVLHLVIILRDLYRSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGD 60

Query: 61 FEKFDKCAVMDPSNWTQQSFALPA 84
          FEKFDKCAVMDPSNWTQQSFALPA
Sbjct: 61 FEKFDKCAVMDPSNWTQQSFALPA 84

[Close]

BLAST of Csor.00g009780 vs. NCBI nr
Match: KAG7025225.1 (GSH-induced LITAF domain protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159 bits (402), Expect = 2.04e-48
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 15  RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 74
           RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN
Sbjct: 51  RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 110

Query: 75  WTQQSFALPA 84
           WTQQSFALPA
Sbjct: 111 WTQQSFALPA 120

[Close]

BLAST of Csor.00g009780 vs. NCBI nr
Match: XP_023514783.1 (GSH-induced LITAF domain protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155 bits (393), Expect = 4.81e-47
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 15  RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 74
           RSK+SSAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN
Sbjct: 51  RSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 110

Query: 75  WTQQSFALPA 84
           WTQQSFALPA
Sbjct: 111 WTQQSFALPA 120

[Close]

BLAST of Csor.00g009780 vs. NCBI nr
Match: XP_022960171.1 (GSH-induced LITAF domain protein-like [Cucurbita moschata])

HSP 1 Score: 154 bits (388), Expect = 2.78e-46
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 15  RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 74
           RSKVSSAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK DKCAVMDPSN
Sbjct: 51  RSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDPSN 110

Query: 75  WTQQSFALPA 84
           WTQQSFALPA
Sbjct: 111 WTQQSFALPA 120

[Close]

BLAST of Csor.00g009780 vs. NCBI nr
Match: XP_023004350.1 (GSH-induced LITAF domain protein-like [Cucurbita maxima])

HSP 1 Score: 151 bits (381), Expect = 3.79e-45
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 15  RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 74
           RSK+SSAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK DKCAVMDPSN
Sbjct: 56  RSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDPSN 115

Query: 75  WTQQSFALPA 84
           WTQQS ALPA
Sbjct: 116 WTQQSLALPA 125

[Close]

BLAST of Csor.00g009780 vs. ExPASy TrEMBL
Match: A0A6J1H6W0 (GSH-induced LITAF domain protein-like OS=Cucurbita moschata OX=3662 GN=LOC111460990 PE=3 SV=1)

HSP 1 Score: 154 bits (388), Expect = 1.35e-46
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 15  RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 74
           RSKVSSAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK DKCAVMDPSN
Sbjct: 51  RSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDPSN 110

Query: 75  WTQQSFALPA 84
           WTQQSFALPA
Sbjct: 111 WTQQSFALPA 120

[Close]

BLAST of Csor.00g009780 vs. ExPASy TrEMBL
Match: A0A6J1KUC0 (GSH-induced LITAF domain protein-like OS=Cucurbita maxima OX=3661 GN=LOC111497692 PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 1.84e-45
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 15  RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 74
           RSK+SSAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK DKCAVMDPSN
Sbjct: 56  RSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDPSN 115

Query: 75  WTQQSFALPA 84
           WTQQS ALPA
Sbjct: 116 WTQQSLALPA 125

[Close]

BLAST of Csor.00g009780 vs. ExPASy TrEMBL
Match: A0A0A0KDG7 (LITAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=3 SV=1)

HSP 1 Score: 142 bits (357), Expect = 1.10e-41
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 15  RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 74
           RSK+SSAAVVGCM P MLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK D+CAVMDP +
Sbjct: 65  RSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVMDPPH 124

Query: 75  WTQQSFALP 83
           WTQ S+ALP
Sbjct: 125 WTQPSYALP 133

[Close]

BLAST of Csor.00g009780 vs. ExPASy TrEMBL
Match: A0A6J1JVN9 (GSH-induced LITAF domain protein OS=Cucurbita maxima OX=3661 GN=LOC111488277 PE=3 SV=1)

HSP 1 Score: 140 bits (353), Expect = 4.45e-41
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 15  RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 74
           RSK+S AAVVGCM P MLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK D CAVMDP +
Sbjct: 65  RSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDACAVMDPPH 124

Query: 75  WTQQSFALPA 84
           WTQ SFALPA
Sbjct: 125 WTQPSFALPA 134

[Close]

BLAST of Csor.00g009780 vs. ExPASy TrEMBL
Match: A0A6J1GS01 (GSH-induced LITAF domain protein OS=Cucurbita moschata OX=3662 GN=LOC111456579 PE=3 SV=1)

HSP 1 Score: 140 bits (352), Expect = 6.32e-41
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 15  RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 74
           RSK+S AAVVGCM P MLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK D CAVMDP +
Sbjct: 65  RSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPH 124

Query: 75  WTQQSFALPA 84
           WTQ SFALPA
Sbjct: 125 WTQPSFALPA 134

[Close]

BLAST of Csor.00g009780 vs. TAIR 10
Match: AT5G13190.1 (CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 6.5e-25
Identity = 48/70 (68.57%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 15  RSKVSSAAVVGCMTPLMLGVCFLCPSLDCLWHKYHYCPSCKEKVGDFEKFDKCAVMDPSN 74
           RSK   AAVV CM P MLG CFLCPS+DCLW+K H+CP C  KV DFEK D C VMDP  
Sbjct: 65  RSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVMDPPQ 124

Query: 75  WTQQSFALPA 85
           W Q SFALPA
Sbjct: 125 WKQPSFALPA 134

The following BLAST results are available for this feature:

BLAST of Csor.00g009780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CD4	9.1e-24	68.57	GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV...	[more]

BLAST of Csor.00g009780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592817.1	1.64e-58	100.00	GSH-induced LITAF domain protein, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7025225.1	2.04e-48	100.00	GSH-induced LITAF domain protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023514783.1	4.81e-47	95.71	GSH-induced LITAF domain protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960171.1	2.78e-46	95.71	GSH-induced LITAF domain protein-like [Cucurbita moschata]	[more]
XP_023004350.1	3.79e-45	92.86	GSH-induced LITAF domain protein-like [Cucurbita maxima]	[more]

BLAST of Csor.00g009780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6W0	1.35e-46	95.71	GSH-induced LITAF domain protein-like OS=Cucurbita moschata OX=3662 GN=LOC111460...	[more]
A0A6J1KUC0	1.84e-45	92.86	GSH-induced LITAF domain protein-like OS=Cucurbita maxima OX=3661 GN=LOC11149769...	[more]
A0A0A0KDG7	1.10e-41	85.51	LITAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=3 ...	[more]
A0A6J1JVN9	4.45e-41	85.71	GSH-induced LITAF domain protein OS=Cucurbita maxima OX=3661 GN=LOC111488277 PE=...	[more]
A0A6J1GS01	6.32e-41	85.71	GSH-induced LITAF domain protein OS=Cucurbita moschata OX=3662 GN=LOC111456579 P...	[more]

BLAST of Csor.00g009780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13190.1	6.5e-25	68.57	CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (Inte...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 11..63 e-value: 0.0034 score: 21.1
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 20..60 e-value: 1.3E-5 score: 25.4
None	No IPR available	PANTHER	PTHR23292:SF37	BNAC09G43880D PROTEIN	coord: 15..76
IPR037519	LITAF domain containing protein	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	coord: 15..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g009780.m01	Csor.00g009780.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding