Csor.00g009730 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g009730
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Csor_Chr08: 116629 .. 117607 (-)
RNA-Seq Expression	Csor.00g009730
Synteny	Csor.00g009730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTCAAGTGTGGTTGGTTAGAAGCAGCTGAGCTCGTCTTTGATATGATGACTGAAAAGAAAAACAAGGTGGCTTGGATTGGACTGATGGTAGGATACTCTTCACGAAGTAACGAACTGCAGGACGTTCTATCACTCTTTGGGAAAATGGTCAGAGATGGTGTCGAACTTGACGCGTTTGTGTTTTTGATTGTCCTCAAGGTATGTGCTGCTTTAGAAGATTTGAATTTGGAGATGAAAATTCATGGTTACTGAGCTAAAGTTGGGTTGGACATTGCAGTTTCTTTAGGAATTCCTCTTGTGGATTTCTATGTGAAATGTGCAAGTTTTGAATCTGCTTTTAAAACTTTTTGAGAAAATACAAGAGCCCAATGATTCTACTTGGAGTGTTAACAGATTGGTAACTTCAGTGATGCTTTAAAGACATTTAAAACCATCAGGAATAAAGGTGTGGCATTGAATTCTTACACCCATTCCTGCATTTTTCAAGCTTGTTCTGCTCTTACATGTTTCGATTTTGGAACTCAAGTTCATGGCGATGGATTTCCTTACCTATTTGGAGAGAGTGCAATGGTGAGACAATGTACTCCAAATGTGGCAGATTAAATTATGCCTTCCAAACCTGCAAATCATCAGACAAACCTTGATACTGCTGCTTGGATTGCTGTAATATTTGGTTATGGAAATCATGGGTATGCTTCTGAATCTTTGAGGCTTTTTATTAAAATGCAGGCGTTCAGTGTTCGGCCAAATGCTGTTACCTTTATTCTTGCAGCCATTCAGGCTTGGTACCGTACTCATAGAATCTACAATTCTTCGCTATGATTGTATGATTGATGTATACTCTTGTGGTGGCGTCCTAGATGATGGCCTTGCGTTGATAAAGAGTATGCCAATCAATGACGATGAAATGAGCTGGAAATGCTTGTTGGGTGGTTGCTGGATCCACAAGAACCGTCGGGAAGACTGCAGCTGA

mRNA sequence

ATGTATGTCAAGTGTGGTTGGTTAGAAGCAGCTGAGCTCGTCTTTGATATGATGACTGAAAAGAAAAACAAGGTGGCTTGGATTGGACTGATGGTAGGATACTCTTCACGAAGTAACGAACTGCAGGACGTTCTATCACTCTTTGGGAAAATGGTCAGAGATGGTGTCGAACTTGACGCGTTTGTGTTTTTGATTGTCCTCAAGATTGGTAACTTCAGTGATGCTTTAAAGACATTTAAAACCATCAGGAATAAAGGTGTGGCATTGAATTCTTACACCCATTCCTGCATTTTTCAAGCTTGTTCTGCTCTTACATGTTTCGATTTTGGAACTCAAGTTCATGGCGATGGATTTCCTTACCTATTTGGAGAGAGTGCAATGCCATTCAGGCTTGGTACCGTACTCATAGAATCTACAATTCTTCGCTATGATTGTATGATTGATGTATACTCTTGTGGTGGCGTCCTAGATGATGGCCTTGCGTTGATAAAGAGTATGCCAATCAATGACGATGAAATGAGCTGGAAATGCTTGTTGGGTGGTTGCTGGATCCACAAGAACCGTCGGGAAGACTGCAGCTGA

Coding sequence (CDS)

ATGTATGTCAAGTGTGGTTGGTTAGAAGCAGCTGAGCTCGTCTTTGATATGATGACTGAAAAGAAAAACAAGGTGGCTTGGATTGGACTGATGGTAGGATACTCTTCACGAAGTAACGAACTGCAGGACGTTCTATCACTCTTTGGGAAAATGGTCAGAGATGGTGTCGAACTTGACGCGTTTGTGTTTTTGATTGTCCTCAAGATTGGTAACTTCAGTGATGCTTTAAAGACATTTAAAACCATCAGGAATAAAGGTGTGGCATTGAATTCTTACACCCATTCCTGCATTTTTCAAGCTTGTTCTGCTCTTACATGTTTCGATTTTGGAACTCAAGTTCATGGCGATGGATTTCCTTACCTATTTGGAGAGAGTGCAATGCCATTCAGGCTTGGTACCGTACTCATAGAATCTACAATTCTTCGCTATGATTGTATGATTGATGTATACTCTTGTGGTGGCGTCCTAGATGATGGCCTTGCGTTGATAAAGAGTATGCCAATCAATGACGATGAAATGAGCTGGAAATGCTTGTTGGGTGGTTGCTGGATCCACAAGAACCGTCGGGAAGACTGCAGCTGA

Protein sequence

MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDAFVFLIVLKIGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFGTQVHGDGFPYLFGESAMPFRLGTVLIESTILRYDCMIDVYSCGGVLDDGLALIKSMPINDDEMSWKCLLGGCWIHKNRREDCS

Homology

[Close]

BLAST of Csor.00g009730 vs. ExPASy Swiss-Prot
Match: Q9LYU9 (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-26
Identity = 98/346 (28.32%), Postives = 128/346 (36.99%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCGWL  A+ VFD M  KK  VA  GLMVGY +++   +D L LF  +V +GVE D+
Sbjct: 228 MYVKCGWLVGAKRVFDQMAVKK-PVACTGLMVGY-TQAGRARDALKLFVDLVTEGVEWDS 287

Query: 61  FVFLIVLK---------------------------------------------------- 120
           FVF +VLK                                                    
Sbjct: 288 FVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQE 347

Query: 121 ------------------IGNFSDALKTFKTIRNKGVA-LNSYTHSCIFQACSALTCFDF 180
                             +  F +A+KTFK++R+K  + LNS+T++ IFQACS L   + 
Sbjct: 348 IREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNI 407

Query: 181 GTQVHGDGFP-----YLFGESAM------------------------------------- 188
           G QVH D          +GESA+                                     
Sbjct: 408 GGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAY 467

[Close]

BLAST of Csor.00g009730 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-12
Identity = 51/187 (27.27%), Postives = 73/187 (39.04%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MY KCG +  A  +FD+MT KKN+V W  ++ GY                          
Sbjct: 464 MYAKCGSIAEARRLFDLMT-KKNEVTWNTMISGYGLH----------------------- 523

Query: 61  FVFLIVLKIGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFGTQVHGDGFPY 120
                    G   +AL  F  + N G+     T  C+  ACS       G ++       
Sbjct: 524 ---------GQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIF------ 583

Query: 121 LFGESAMPFRLGTVLIESTILRYDCMIDVYSCGGVLDDGLALIKSMPINDDEMSWKCLLG 180
               ++M  R G    E ++  Y CM+D+    G L   L  I++M I      W+ LLG
Sbjct: 584 ----NSMIHRYG---FEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLG 604

Query: 181 GCWIHKN 188
            C IHK+
Sbjct: 644 ACRIHKD 604

[Close]

BLAST of Csor.00g009730 vs. ExPASy Swiss-Prot
Match: Q3ECB8 (Pentatricopeptide repeat-containing protein At1g77170, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E21 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.0e-11
Identity = 50/186 (26.88%), Postives = 78/186 (41.94%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MY KCG ++ A  +F+ M  ++N V+W  ++VGY++  N L                   
Sbjct: 264 MYGKCGRMDLASHIFEEM-RQRNVVSWSSMIVGYAANGNTL------------------- 323

Query: 61  FVFLIVLKIGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFGTQVHG----D 120
                        +AL+ F+ +R  GV  N  T   +  AC           VHG    +
Sbjct: 324 -------------EALECFRQMREFGVRPNKITFVGVLSAC-----------VHGGLVEE 383

Query: 121 GFPYLFGESAMPFRLGTVLIESTILRYDCMIDVYSCGGVLDDGLALIKSMPINDDEMSWK 180
           G  Y F      F L     E  +  Y C++D+ S  G L +   +++ MP+  + M W 
Sbjct: 384 GKTY-FAMMKSEFEL-----EPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWG 399

Query: 181 CLLGGC 183
           CL+GGC
Sbjct: 444 CLMGGC 399

[Close]

BLAST of Csor.00g009730 vs. ExPASy Swiss-Prot
Match: Q9MA95 (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-10
Identity = 61/246 (24.80%), Postives = 93/246 (37.80%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MY KCG L  A  +FD M E +  V+W  ++ GY S++ + ++ L +F  M+  G+  D 
Sbjct: 260 MYAKCGDLRTARYLFDGMPE-RTLVSWNSIITGY-SQNGDAEEALCMFLDMLDLGIAPDK 319

Query: 61  FVFLIVL---------------------------------------KIGNFSDALKTFKT 120
             FL V+                                       K G+   A K F+ 
Sbjct: 320 VTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFED 379

Query: 121 IRNKG------VALNSYTHSCIFQACSALTCFDFGTQVHGDGFPYLFGESAMPFRLGTVL 180
           +  K       V +   +H    +A S             DG  YL G       +G V 
Sbjct: 380 LEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYL-GVLYACSHIGLVE 439

Query: 181 --------------IESTILRYDCMIDVYSCGGVLDDGLALIKSMPINDDEMSWKCLLGG 188
                         +E T+  Y CM+D+ S  G  ++   L+K+MP+  +   W  LL G
Sbjct: 440 EGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNG 499

[Close]

BLAST of Csor.00g009730 vs. ExPASy Swiss-Prot
Match: Q9C6T2 (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-10
Identity = 46/187 (24.60%), Postives = 81/187 (43.32%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCG L+ A  +F  M EK+N + +  ++ G +    E +  L +F KM+++G+E D 
Sbjct: 278 MYVKCGCLDKALHIFQKM-EKRNNLTYSAMISGLALH-GEGESALRMFSKMIKEGLEPDH 337

Query: 61  FVFLIVLKIGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFGTQVHGDGFPY 120
            V++ V                      LN+ +HS + +                     
Sbjct: 338 VVYVSV----------------------LNACSHSGLVKE-------------------- 397

Query: 121 LFGESAMPFRLGTVLIESTILRYDCMIDVYSCGGVLDDGLALIKSMPINDDEMSWKCLLG 180
             G       L    +E T   Y C++D+    G+L++ L  I+S+PI  +++ W+  L 
Sbjct: 398 --GRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLS 418

Query: 181 GCWIHKN 188
            C + +N
Sbjct: 458 QCRVRQN 418

[Close]

BLAST of Csor.00g009730 vs. NCBI nr
Match: KAG6592821.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 400 bits (1028), Expect = 7.56e-141
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA
Sbjct: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60

Query: 61  FVFLIVLKIGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFGTQVHGDGFPY 120
           FVFLIVLKIGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFGTQVHGDGFPY
Sbjct: 61  FVFLIVLKIGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFGTQVHGDGFPY 120

Query: 121 LFGESAMPFRLGTVLIESTILRYDCMIDVYSCGGVLDDGLALIKSMPINDDEMSWKCLLG 180
           LFGESAMPFRLGTVLIESTILRYDCMIDVYSCGGVLDDGLALIKSMPINDDEMSWKCLLG
Sbjct: 121 LFGESAMPFRLGTVLIESTILRYDCMIDVYSCGGVLDDGLALIKSMPINDDEMSWKCLLG 180

Query: 181 GCWIHKNRREDCS 193
           GCWIHKNRREDCS
Sbjct: 181 GCWIHKNRREDCS 193

[Close]

BLAST of Csor.00g009730 vs. NCBI nr
Match: XP_022148899.1 (pentatricopeptide repeat-containing protein At5g13270, chloroplastic [Momordica charantia])

HSP 1 Score: 191 bits (485), Expect = 5.58e-53
Identity = 132/345 (38.26%), Postives = 150/345 (43.48%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCGWLE A LVFD MT K NKVAW GLMVGYSS+S++LQ  L+LF KMV +GVELD 
Sbjct: 234 MYVKCGWLEGAALVFDKMTAK-NKVAWTGLMVGYSSKSDKLQVALALFEKMVWEGVELDE 293

Query: 61  FVFLIVLK---------------------------------------------------- 120
           FVF IVLK                                                    
Sbjct: 294 FVFSIVLKVCAALEDLSLGMQIHGWSAKLGLDSAVSVGTPLVDFYVKCASFESAFKTFGR 353

Query: 121 ------------------IGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFG 180
                             IG F DAL+TFKT+R++GV LNSY ++ IFQACSA TCFD G
Sbjct: 354 IQEPNDVSWSTIITAYCQIGKFDDALQTFKTLRSQGVVLNSYIYTSIFQACSAHTCFDIG 413

Query: 181 TQVHGDGFP-----YLFGESAM-------------------------------------- 187
           TQVH D        YL+GESAM                                      
Sbjct: 414 TQVHADAIKGGMISYLYGESAMVTMYSKCGRLDYAFQAFKSLDKPDTTAWTAIICGYAYH 473

[Close]

BLAST of Csor.00g009730 vs. NCBI nr
Match: KAG7025229.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160 bits (406), Expect = 4.00e-44
Identity = 91/146 (62.33%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGV    
Sbjct: 139 MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGV---- 198

Query: 61  FVFLIVLKIGNFSDALKTFKTIRNKGVALNSYTHSCIF---QACSALTCFDFGTQVHGDG 120
                                              C+F   QACSALTCFDFGTQVHGDG
Sbjct: 199 -----------------------------------CVFDCPQACSALTCFDFGTQVHGDG 244

Query: 121 FPYLFGESAMPFRLGTVLIESTILRY 143
           FPYLFGESAM   L T    + I  Y
Sbjct: 259 FPYLFGESAMT-NLDTAAWIAVIFGY 244

[Close]

BLAST of Csor.00g009730 vs. NCBI nr
Match: XP_015895926.1 (pentatricopeptide repeat-containing protein At5g13270, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 149 bits (377), Expect = 6.17e-38
Identity = 110/345 (31.88%), Postives = 141/345 (40.87%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCGWLE A LVFD M +K N V W GL+VGY+  + +L+DVL+LF +MVR+GVELD 
Sbjct: 238 MYVKCGWLEGAVLVFDSMADK-NVVGWTGLLVGYTE-AGKLKDVLALFAEMVREGVELDE 297

Query: 61  FVFLIVLK---------------------------------------------------- 120
           FVF IVLK                                                    
Sbjct: 298 FVFSIVLKACGGLEDLNTGRQIHGYGIKLGMESEVSVGTPLVDFYVKCANLSFALKAFKR 357

Query: 121 ------------------IGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFG 180
                             IG F ++LK F++IR+K + LNS+ ++ IFQACSAL   + G
Sbjct: 358 IREPNDVSWSAIISGYCQIGEFEESLKIFQSIRHKDIVLNSFIYTSIFQACSALADINLG 417

Query: 181 TQVHGDGFP-----YLFGESAM------------PFRL---------------------- 187
            Q H D        YL+G+SAM             +R+                      
Sbjct: 418 AQAHADAIKKGLVAYLYGKSAMVTMYAKCGRLDYAYRVFKSIDNPDTVAWTAIICGYAYH 477

[Close]

BLAST of Csor.00g009730 vs. NCBI nr
Match: XP_023876293.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g13270, chloroplastic-like [Quercus suber])

HSP 1 Score: 148 bits (373), Expect = 2.78e-37
Identity = 106/327 (32.42%), Postives = 137/327 (41.90%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCGWLE AELVF+ MTEK N V W GLMVGY+ ++ +L+  L LF KMV++GV++D 
Sbjct: 205 MYVKCGWLEGAELVFNQMTEK-NAVVWTGLMVGYT-QAGKLEAALELFTKMVKEGVQMDE 264

Query: 61  FVFLIVLK---------------------------------------------------- 120
           FVF I+LK                                                    
Sbjct: 265 FVFSIILKVKLGLDSDVSVGTPLVDFYVKCGSFESARLAFERISEPNDVSWSCVISGYCQ 324

Query: 121 IGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFGTQVHGDGFP-----YLFG 180
           IG F +++K FK +++KGV LNS+ ++ IFQAC+AL   + G QVH D        YL+G
Sbjct: 325 IGEFEESVKIFKLLKSKGVVLNSFIYTSIFQACAALADLNLGAQVHADAIKTELVAYLYG 384

Query: 181 ESAM----------------------PFRL------------GTVL-------------- 187
           ESAM                      P  +            G V+              
Sbjct: 385 ESAMISMYSRCGRSDCAYQVFESLENPDTVAWTAIICGYAYHGNVIKALSLFNRMQDCGV 444

[Close]

BLAST of Csor.00g009730 vs. ExPASy TrEMBL
Match: A0A6J1D5E7 (pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017456 PE=3 SV=1)

HSP 1 Score: 191 bits (485), Expect = 2.70e-53
Identity = 132/345 (38.26%), Postives = 150/345 (43.48%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCGWLE A LVFD MT K NKVAW GLMVGYSS+S++LQ  L+LF KMV +GVELD 
Sbjct: 234 MYVKCGWLEGAALVFDKMTAK-NKVAWTGLMVGYSSKSDKLQVALALFEKMVWEGVELDE 293

Query: 61  FVFLIVLK---------------------------------------------------- 120
           FVF IVLK                                                    
Sbjct: 294 FVFSIVLKVCAALEDLSLGMQIHGWSAKLGLDSAVSVGTPLVDFYVKCASFESAFKTFGR 353

Query: 121 ------------------IGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFG 180
                             IG F DAL+TFKT+R++GV LNSY ++ IFQACSA TCFD G
Sbjct: 354 IQEPNDVSWSTIITAYCQIGKFDDALQTFKTLRSQGVVLNSYIYTSIFQACSAHTCFDIG 413

Query: 181 TQVHGDGFP-----YLFGESAM-------------------------------------- 187
           TQVH D        YL+GESAM                                      
Sbjct: 414 TQVHADAIKGGMISYLYGESAMVTMYSKCGRLDYAFQAFKSLDKPDTTAWTAIICGYAYH 473

[Close]

BLAST of Csor.00g009730 vs. ExPASy TrEMBL
Match: A0A6P4ALF1 (pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Ziziphus jujuba OX=326968 GN=LOC107429703 PE=3 SV=1)

HSP 1 Score: 149 bits (377), Expect = 2.99e-38
Identity = 110/345 (31.88%), Postives = 141/345 (40.87%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCGWLE A LVFD M +K N V W GL+VGY+  + +L+DVL+LF +MVR+GVELD 
Sbjct: 238 MYVKCGWLEGAVLVFDSMADK-NVVGWTGLLVGYTE-AGKLKDVLALFAEMVREGVELDE 297

Query: 61  FVFLIVLK---------------------------------------------------- 120
           FVF IVLK                                                    
Sbjct: 298 FVFSIVLKACGGLEDLNTGRQIHGYGIKLGMESEVSVGTPLVDFYVKCANLSFALKAFKR 357

Query: 121 ------------------IGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFG 180
                             IG F ++LK F++IR+K + LNS+ ++ IFQACSAL   + G
Sbjct: 358 IREPNDVSWSAIISGYCQIGEFEESLKIFQSIRHKDIVLNSFIYTSIFQACSALADINLG 417

Query: 181 TQVHGDGFP-----YLFGESAM------------PFRL---------------------- 187
            Q H D        YL+G+SAM             +R+                      
Sbjct: 418 AQAHADAIKKGLVAYLYGKSAMVTMYAKCGRLDYAYRVFKSIDNPDTVAWTAIICGYAYH 477

[Close]

BLAST of Csor.00g009730 vs. ExPASy TrEMBL
Match: A0A2K2BTF2 (DYW_deaminase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G066100 PE=3 SV=1)

HSP 1 Score: 147 bits (371), Expect = 1.98e-37
Identity = 109/345 (31.59%), Postives = 139/345 (40.29%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCGWLE AELVF+ M+EK N VAW G+MVGY+    ++ D L+LF KMV +GVELD 
Sbjct: 239 MYVKCGWLEGAELVFEKMSEK-NAVAWTGIMVGYTQAERQM-DALALFAKMVNEGVELDE 298

Query: 61  FVFLIVLK---------------------------------------------------- 120
           +VF IVLK                                                    
Sbjct: 299 YVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEW 358

Query: 121 ------------------IGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFG 180
                             +G F +ALKTF+++R + V +NS+T++ IFQACSAL  F+ G
Sbjct: 359 ISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSG 418

Query: 181 TQVHGDGFP-----YLFGESAM-------------------------------------- 187
            Q H D        Y  GESAM                                      
Sbjct: 419 AQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQ 478

[Close]

BLAST of Csor.00g009730 vs. ExPASy TrEMBL
Match: A0A5N6R4U8 (DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_009438 PE=3 SV=1)

HSP 1 Score: 146 bits (369), Expect = 3.74e-37
Identity = 105/345 (30.43%), Postives = 138/345 (40.00%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCGWLE AEL FD M EK N VAW GLMVGY+ ++ +L+D L+LF KMV++GV +D 
Sbjct: 241 MYVKCGWLEGAELAFDRMVEK-NAVAWTGLMVGYT-QAEKLEDALALFAKMVKEGVPMDE 300

Query: 61  FVFLIVLK---------------------------------------------------- 120
           FVF I+LK                                                    
Sbjct: 301 FVFSIILKVCGVLEYLNMGRQIHGYSVKLGMDSNFSVGTPLVDLYVKCGSFESACRAFER 360

Query: 121 ------------------IGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFG 180
                             IG F +++K FK+++++GV LNS+ ++ IFQAC+AL   + G
Sbjct: 361 ITEPNDVSWSCIIAGYCQIGEFEESVKIFKSLKSRGVVLNSFVYTSIFQACAALADLNLG 420

Query: 181 TQVHGDGFP-----YLFGESAM-------------------------------------- 187
            Q H D        YL+GESAM                                      
Sbjct: 421 AQAHADAIKRGLVSYLYGESAMITMYSRCGRLDYAYRSFESLDKPDTVAWTAIICGYAYH 480

[Close]

BLAST of Csor.00g009730 vs. ExPASy TrEMBL
Match: A0A7N2L9A7 (DYW_deaminase domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 145 bits (367), Expect = 6.88e-37
Identity = 105/345 (30.43%), Postives = 135/345 (39.13%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCGWLE AELVF+ MTEK N V W GLMVGY+ ++ +L+  L LF KMV++GV++D 
Sbjct: 235 MYVKCGWLEGAELVFNQMTEK-NAVVWTGLMVGYT-QAGKLEAALELFTKMVKEGVQMDE 294

Query: 61  FVFLIVLK---------------------------------------------------- 120
           FVF I+LK                                                    
Sbjct: 295 FVFSIILKVCGGVKDLNMGRQIHGCSVKLGLDSDVSVGTPLVDFYVKCGSFESAHLAFER 354

Query: 121 ------------------IGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFG 180
                             IG F +++K FK +++KGV LNS+ ++ IFQAC+AL   + G
Sbjct: 355 ISEPNDVSWSCVISGYCQIGEFEESVKIFKLLKSKGVVLNSFIYTSIFQACAALADLNLG 414

Query: 181 TQVHGDGFP-----YLFGESAM-------------------------------------- 187
            QVH D        YL+GESAM                                      
Sbjct: 415 AQVHADAIKTGLVAYLYGESAMISMYSRCGRSDYAYQVFESLENPDTVAWTAIICGYAYH 474

[Close]

BLAST of Csor.00g009730 vs. TAIR 10
Match: AT5G13270.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-27
Identity = 98/346 (28.32%), Postives = 128/346 (36.99%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCGWL  A+ VFD M  KK  VA  GLMVGY +++   +D L LF  +V +GVE D+
Sbjct: 228 MYVKCGWLVGAKRVFDQMAVKK-PVACTGLMVGY-TQAGRARDALKLFVDLVTEGVEWDS 287

Query: 61  FVFLIVLK---------------------------------------------------- 120
           FVF +VLK                                                    
Sbjct: 288 FVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQE 347

Query: 121 ------------------IGNFSDALKTFKTIRNKGVA-LNSYTHSCIFQACSALTCFDF 180
                             +  F +A+KTFK++R+K  + LNS+T++ IFQACS L   + 
Sbjct: 348 IREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNI 407

Query: 181 GTQVHGDGFP-----YLFGESAM------------------------------------- 188
           G QVH D          +GESA+                                     
Sbjct: 408 GGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAY 467

[Close]

BLAST of Csor.00g009730 vs. TAIR 10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-13
Identity = 51/187 (27.27%), Postives = 73/187 (39.04%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MY KCG +  A  +FD+MT KKN+V W  ++ GY                          
Sbjct: 464 MYAKCGSIAEARRLFDLMT-KKNEVTWNTMISGYGLH----------------------- 523

Query: 61  FVFLIVLKIGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFGTQVHGDGFPY 120
                    G   +AL  F  + N G+     T  C+  ACS       G ++       
Sbjct: 524 ---------GQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIF------ 583

Query: 121 LFGESAMPFRLGTVLIESTILRYDCMIDVYSCGGVLDDGLALIKSMPINDDEMSWKCLLG 180
               ++M  R G    E ++  Y CM+D+    G L   L  I++M I      W+ LLG
Sbjct: 584 ----NSMIHRYG---FEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLG 604

Query: 181 GCWIHKN 188
            C IHK+
Sbjct: 644 ACRIHKD 604

[Close]

BLAST of Csor.00g009730 vs. TAIR 10
Match: AT1G77170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-12
Identity = 50/186 (26.88%), Postives = 78/186 (41.94%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MY KCG ++ A  +F+ M  ++N V+W  ++VGY++  N L                   
Sbjct: 264 MYGKCGRMDLASHIFEEM-RQRNVVSWSSMIVGYAANGNTL------------------- 323

Query: 61  FVFLIVLKIGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFGTQVHG----D 120
                        +AL+ F+ +R  GV  N  T   +  AC           VHG    +
Sbjct: 324 -------------EALECFRQMREFGVRPNKITFVGVLSAC-----------VHGGLVEE 383

Query: 121 GFPYLFGESAMPFRLGTVLIESTILRYDCMIDVYSCGGVLDDGLALIKSMPINDDEMSWK 180
           G  Y F      F L     E  +  Y C++D+ S  G L +   +++ MP+  + M W 
Sbjct: 384 GKTY-FAMMKSEFEL-----EPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWG 399

Query: 181 CLLGGC 183
           CL+GGC
Sbjct: 444 CLMGGC 399

[Close]

BLAST of Csor.00g009730 vs. TAIR 10
Match: AT3G05240.1 (mitochondrial editing factor 19 )

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11
Identity = 61/246 (24.80%), Postives = 93/246 (37.80%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MY KCG L  A  +FD M E +  V+W  ++ GY S++ + ++ L +F  M+  G+  D 
Sbjct: 260 MYAKCGDLRTARYLFDGMPE-RTLVSWNSIITGY-SQNGDAEEALCMFLDMLDLGIAPDK 319

Query: 61  FVFLIVL---------------------------------------KIGNFSDALKTFKT 120
             FL V+                                       K G+   A K F+ 
Sbjct: 320 VTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFED 379

Query: 121 IRNKG------VALNSYTHSCIFQACSALTCFDFGTQVHGDGFPYLFGESAMPFRLGTVL 180
           +  K       V +   +H    +A S             DG  YL G       +G V 
Sbjct: 380 LEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYL-GVLYACSHIGLVE 439

Query: 181 --------------IESTILRYDCMIDVYSCGGVLDDGLALIKSMPINDDEMSWKCLLGG 188
                         +E T+  Y CM+D+ S  G  ++   L+K+MP+  +   W  LL G
Sbjct: 440 EGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNG 499

[Close]

BLAST of Csor.00g009730 vs. TAIR 10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-11
Identity = 46/187 (24.60%), Postives = 81/187 (43.32%), Query Frame = 0


Query: 1   MYVKCGWLEAAELVFDMMTEKKNKVAWIGLMVGYSSRSNELQDVLSLFGKMVRDGVELDA 60
           MYVKCG L+ A  +F  M EK+N + +  ++ G +    E +  L +F KM+++G+E D 
Sbjct: 278 MYVKCGCLDKALHIFQKM-EKRNNLTYSAMISGLALH-GEGESALRMFSKMIKEGLEPDH 337

Query: 61  FVFLIVLKIGNFSDALKTFKTIRNKGVALNSYTHSCIFQACSALTCFDFGTQVHGDGFPY 120
            V++ V                      LN+ +HS + +                     
Sbjct: 338 VVYVSV----------------------LNACSHSGLVKE-------------------- 397

Query: 121 LFGESAMPFRLGTVLIESTILRYDCMIDVYSCGGVLDDGLALIKSMPINDDEMSWKCLLG 180
             G       L    +E T   Y C++D+    G+L++ L  I+S+PI  +++ W+  L 
Sbjct: 398 --GRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLS 418

Query: 181 GCWIHKN 188
            C + +N
Sbjct: 458 QCRVRQN 418

The following BLAST results are available for this feature:

BLAST of Csor.00g009730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYU9	2.0e-26	28.32	Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidop...	[more]
Q9SUH6	2.8e-12	27.27	Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX...	[more]
Q3ECB8	7.0e-11	26.88	Pentatricopeptide repeat-containing protein At1g77170, mitochondrial OS=Arabidop...	[more]
Q9MA95	1.6e-10	24.80	Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th...	[more]
Q9C6T2	4.5e-10	24.60	Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX...	[more]

BLAST of Csor.00g009730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592821.1	7.56e-141	100.00	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_022148899.1	5.58e-53	38.26	pentatricopeptide repeat-containing protein At5g13270, chloroplastic [Momordica ...	[more]
KAG7025229.1	4.00e-44	62.33	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_015895926.1	6.17e-38	31.88	pentatricopeptide repeat-containing protein At5g13270, chloroplastic [Ziziphus j...	[more]
XP_023876293.1	2.78e-37	32.42	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g13270, chlo...	[more]

BLAST of Csor.00g009730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5E7	2.70e-53	38.26	pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Momordic...	[more]
A0A6P4ALF1	2.99e-38	31.88	pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Ziziphus...	[more]
A0A2K2BTF2	1.98e-37	31.59	DYW_deaminase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_...	[more]
A0A5N6R4U8	3.74e-37	30.43	DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_...	[more]
A0A7N2L9A7	6.88e-37	30.43	DYW_deaminase domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]

BLAST of Csor.00g009730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13270.1	1.4e-27	28.32	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G30700.1	2.0e-13	27.27	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G77170.1	4.9e-12	26.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G05240.1	1.1e-11	24.80	mitochondrial editing factor 19	[more]
AT1G31920.1	3.2e-11	24.60	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 68..192 e-value: 1.2E-7 score: 33.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..67 e-value: 2.4E-10 score: 42.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 143..166 e-value: 0.88 score: 10.0 coord: 2..21 e-value: 0.1 score: 12.9 coord: 36..56 e-value: 0.41 score: 11.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 23..58 score: 8.878711
None	No IPR available	PANTHER	PTHR47926:SF55	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..72 coord: 134..186
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 1..72 coord: 134..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g009730.m01	Csor.00g009730.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding