Csor.00g009710 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g009710
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	light-regulated protein-like
Location	Csor_Chr08: 120623 .. 121159 (-)
RNA-Seq Expression	Csor.00g009710
Synteny	Csor.00g009710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCTCTTCCCACCAACCACCAAATCAAAGGCCTTCTCAATGCCTACGAGGTCCCTACGAAGGCACCCCACTTCTCAAACTCAACGTCAACGTCCCACCCTACAAATAAAGGCAAGTGCGGTTGGACAAGACCTTTCACCAGTTGACTACAATATGTCCGATTCAATACCCCTTTTCGTTTGCTGCTCTTCTGTGTCTGTTTCTACAGAGCTTTTCCAGCTGAGGCTTGTGACACTGTTGGAGGGGAAGCTTGTGATGTTGAAATGTATCCGGAAGTAAAGCTAAAACCAGAGGCCAAGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGTGTTGATAGAGAGTATCGACAGTATGACCGTCCCAAGACGTAAGATCTCAACAAAACAACCCATTTGCACCCACTCATTTCTTGTGAAGCAACACCACTTTTAAACATCTATAGGCAATATGATACATTATTCTTGAGATTTAACGATTGTTGCAGAGTCTTTCCAGCGGAGGCTTGTGATGATCTGGGGTGGTGA

mRNA sequence

ATGCTCTCTCTTCCCACCAACCACCAAATCAAAGGCCTTCTCAATGCCTACGAGGTCCCTACGAAGGCACCCCACTTCTCAAACTCAACGTCAACGTCCCACCCTACAAATAAAGGCAAAGCTTTTCCAGCTGAGGCTTGTGACACTGTTGGAGGGGAAGCTTGTGATGTTGAAATGTATCCGGAAGTAAAGCTAAAACCAGAGGCCAAGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGTGTTGATAGAGAGTATCGACAGTATGACCGTCCCAAGACAGTCTTTCCAGCGGAGGCTTGTGATGATCTGGGGTGGTGA

Coding sequence (CDS)

ATGCTCTCTCTTCCCACCAACCACCAAATCAAAGGCCTTCTCAATGCCTACGAGGTCCCTACGAAGGCACCCCACTTCTCAAACTCAACGTCAACGTCCCACCCTACAAATAAAGGCAAAGCTTTTCCAGCTGAGGCTTGTGACACTGTTGGAGGGGAAGCTTGTGATGTTGAAATGTATCCGGAAGTAAAGCTAAAACCAGAGGCCAAGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGTGTTGATAGAGAGTATCGACAGTATGACCGTCCCAAGACAGTCTTTCCAGCGGAGGCTTGTGATGATCTGGGGTGGTGA

Protein sequence

MLSLPTNHQIKGLLNAYEVPTKAPHFSNSTSTSHPTNKGKAFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGGGGGGGGGGSVDREYRQYDRPKTVFPAEACDDLGW

Homology

[Close]

BLAST of Csor.00g009710 vs. ExPASy Swiss-Prot
Match: Q03200 (Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-13
Identity = 37/66 (56.06%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 42  FPAEACDTVGGEACDVEMYPEVKLKPEAKKGGGGGGGGGGGSVDREYRQYDRPKTVFPAE 101
           FP EACD +GGEAC+V+MYPE KL   A              VDR+Y  YD P TVFP E
Sbjct: 59  FPMEACDLIGGEACNVQMYPEAKLSSSA---AVAVSRAAAEEVDRDYLSYDEPTTVFPEE 118

Query: 102 ACDDLG 108
           ACDDLG
Sbjct: 119 ACDDLG 121

[Close]

BLAST of Csor.00g009710 vs. ExPASy Swiss-Prot
Match: Q96500 (Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-11
Identity = 40/89 (44.94%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 27  SNSTSTSHPTNKG------KAFPAEACDTVGGEACDVEMYPEVKL--KPEAKKGGGGGGG 86
           S+S+ TS P            FPAEAC+ + G AC  ++YPEVKL  KP ++        
Sbjct: 47  SSSSLTSDPNTVDYNSSILSVFPAEACEVISGYACSADIYPEVKLDTKPVSRP------- 106

Query: 87  GGGGSVDREYRQYDRPKTVFPAEACDDLG 108
                VDREY +Y+ PKTVF  EACDDLG
Sbjct: 107 VASEPVDREYEEYNSPKTVFREEACDDLG 128

[Close]

BLAST of Csor.00g009710 vs. NCBI nr
Match: KAG6592823.1 (Light-regulated protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233 bits (594), Expect = 1.95e-77
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLSLPTNHQIKGLLNAYEVPTKAPHFSNSTSTSHPTNKGKAFPAEACDTVGGEACDVEMY 60
           MLSLPTNHQIKGLLNAYEVPTKAPHFSNSTSTSHPTNKGKAFPAEACDTVGGEACDVEMY
Sbjct: 1   MLSLPTNHQIKGLLNAYEVPTKAPHFSNSTSTSHPTNKGKAFPAEACDTVGGEACDVEMY 60

Query: 61  PEVKLKPEAKKGGGGGGGGGGGSVDREYRQYDRPKTVFPAEACDDLGW 108
           PEVKLKPEAKKGGGGGGGGGGGSVDREYRQYDRPKTVFPAEACDDLGW
Sbjct: 61  PEVKLKPEAKKGGGGGGGGGGGSVDREYRQYDRPKTVFPAEACDDLGW 108

[Close]

BLAST of Csor.00g009710 vs. NCBI nr
Match: XP_023004893.1 (uncharacterized protein LOC111498071 [Cucurbita maxima])

HSP 1 Score: 122 bits (305), Expect = 2.72e-32
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 35  PTNKGKAFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGGGGGGGGGGSVDREYRQYDRP 94
           P  K +AFPAEACDTVGGEACDV+MYPEVKLKPEAK+GGG         VDRE+ QYDRP
Sbjct: 127 PPYKHRAFPAEACDTVGGEACDVDMYPEVKLKPEAKRGGGVSE-----PVDREHLQYDRP 186

Query: 95  KTVFPAEACDDLGW 108
           KTVFPAEACDDLGW
Sbjct: 187 KTVFPAEACDDLGW 195

[Close]

BLAST of Csor.00g009710 vs. NCBI nr
Match: XP_022953556.1 (light-regulated protein-like [Cucurbita moschata] >KAG7014620.1 Light-regulated protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115 bits (288), Expect = 2.38e-30
Identity = 61/103 (59.22%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 5   PTNHQIKGLLNAYEVPTKAPHFSNSTSTSHPTNKGKAFPAEACDTVGGEACDVEMYPEVK 64
           PT+   + +L A     KA       ST   ++    FPAEAC+TVGGEACDVEMYPEVK
Sbjct: 38  PTSQTHRPILKA-----KASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVK 97

Query: 65  LKPEAKKGGGGGGGGGGGSVDREYRQYDRPKTVFPAEACDDLG 107
           LKPEAKKGG         +VDREY QYD PKTVFPAEACDDLG
Sbjct: 98  LKPEAKKGGSVSE-----AVDREYLQYDSPKTVFPAEACDDLG 130

[Close]

BLAST of Csor.00g009710 vs. NCBI nr
Match: XP_022991991.1 (light-regulated protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 115 bits (287), Expect = 3.38e-30
Identity = 62/112 (55.36%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 14  LNAYEVPTKAPHFSNSTSTSHPTNKGKA------------------FPAEACDTVGGEAC 73
           L A+ VP+++     ++ T  P  K KA                  FPAEAC+TVGGEAC
Sbjct: 24  LMAFSVPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSVSSVFPAEACETVGGEAC 83

Query: 74  DVEMYPEVKLKPEAKKGGGGGGGGGGGSVDREYRQYDRPKTVFPAEACDDLG 107
           DVEMYPEVKLKPEAKKGG         +VDREY QYD PKTVFPAEACDDLG
Sbjct: 84  DVEMYPEVKLKPEAKKGGSVSE-----AVDREYLQYDSPKTVFPAEACDDLG 130

[Close]

BLAST of Csor.00g009710 vs. NCBI nr
Match: XP_023547464.1 (light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115 bits (287), Expect = 3.38e-30
Identity = 61/112 (54.46%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 14  LNAYEVPTKAPHFSNSTSTSHPTNKGKA------------------FPAEACDTVGGEAC 73
           L A+ +P+++     ++ T  P  K KA                  FPAEAC+TVGGEAC
Sbjct: 24  LMAFSIPSRSKRRHPTSQTHRPILKAKASAVGQDPSTVDYSSVSSVFPAEACETVGGEAC 83

Query: 74  DVEMYPEVKLKPEAKKGGGGGGGGGGGSVDREYRQYDRPKTVFPAEACDDLG 107
           DVEMYPEVKLKPEAKKGG         +VDREY QYD PKTVFPAEACDDLG
Sbjct: 84  DVEMYPEVKLKPEAKKGGSVSE-----AVDREYLQYDSPKTVFPAEACDDLG 130

[Close]

BLAST of Csor.00g009710 vs. ExPASy TrEMBL
Match: A0A6J1L0S6 (uncharacterized protein LOC111498071 OS=Cucurbita maxima OX=3661 GN=LOC111498071 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 1.32e-32
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 35  PTNKGKAFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGGGGGGGGGGSVDREYRQYDRP 94
           P  K +AFPAEACDTVGGEACDV+MYPEVKLKPEAK+GGG         VDRE+ QYDRP
Sbjct: 127 PPYKHRAFPAEACDTVGGEACDVDMYPEVKLKPEAKRGGGVSE-----PVDREHLQYDRP 186

Query: 95  KTVFPAEACDDLGW 108
           KTVFPAEACDDLGW
Sbjct: 187 KTVFPAEACDDLGW 195

[Close]

BLAST of Csor.00g009710 vs. ExPASy TrEMBL
Match: A0A6J1GNA5 (light-regulated protein-like OS=Cucurbita moschata OX=3662 GN=LOC111456061 PE=4 SV=1)

HSP 1 Score: 115 bits (288), Expect = 1.15e-30
Identity = 61/103 (59.22%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 5   PTNHQIKGLLNAYEVPTKAPHFSNSTSTSHPTNKGKAFPAEACDTVGGEACDVEMYPEVK 64
           PT+   + +L A     KA       ST   ++    FPAEAC+TVGGEACDVEMYPEVK
Sbjct: 38  PTSQTHRPILKA-----KASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVK 97

Query: 65  LKPEAKKGGGGGGGGGGGSVDREYRQYDRPKTVFPAEACDDLG 107
           LKPEAKKGG         +VDREY QYD PKTVFPAEACDDLG
Sbjct: 98  LKPEAKKGGSVSE-----AVDREYLQYDSPKTVFPAEACDDLG 130

[Close]

BLAST of Csor.00g009710 vs. ExPASy TrEMBL
Match: A0A6J1JSC1 (light-regulated protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488476 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 1.64e-30
Identity = 62/112 (55.36%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 14  LNAYEVPTKAPHFSNSTSTSHPTNKGKA------------------FPAEACDTVGGEAC 73
           L A+ VP+++     ++ T  P  K KA                  FPAEAC+TVGGEAC
Sbjct: 24  LMAFSVPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSVSSVFPAEACETVGGEAC 83

Query: 74  DVEMYPEVKLKPEAKKGGGGGGGGGGGSVDREYRQYDRPKTVFPAEACDDLG 107
           DVEMYPEVKLKPEAKKGG         +VDREY QYD PKTVFPAEACDDLG
Sbjct: 84  DVEMYPEVKLKPEAKKGGSVSE-----AVDREYLQYDSPKTVFPAEACDDLG 130

[Close]

BLAST of Csor.00g009710 vs. ExPASy TrEMBL
Match: Q39636 (CR9 protein OS=Cucumis sativus OX=3659 GN=CR9 PE=2 SV=1)

HSP 1 Score: 114 bits (284), Expect = 3.93e-30
Identity = 64/108 (59.26%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 3   SLPTN---HQIKGLLNAYEVPTKAPHFSNSTSTSHPTNKGKAFPAEACDTVGGEACDVEM 62
           S+PT     Q KG L A     KA       ST   ++    FPAEACDTVGGEACDVEM
Sbjct: 27  SIPTRSMPRQSKGTLKA-----KASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEM 86

Query: 63  YPEVKLKPEAKKGGGGGGGGGGGSVDREYRQYDRPKTVFPAEACDDLG 107
           YPEVKLKPEAKKG           V+REY QYD PKTVFPAEACDDLG
Sbjct: 87  YPEVKLKPEAKKGNSVTE-----PVEREYLQYDSPKTVFPAEACDDLG 124

[Close]

BLAST of Csor.00g009710 vs. ExPASy TrEMBL
Match: A0A5D3DLY7 (Light-regulated protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001960 PE=4 SV=1)

HSP 1 Score: 113 bits (282), Expect = 7.90e-30
Identity = 64/105 (60.95%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 3   SLPTNHQIKGLLNAYEVPTKAPHFSNSTSTSHPTNKGKAFPAEACDTVGGEACDVEMYPE 62
           SLP   Q KG L A     KA       ST   ++    FPAEACDTVGGEACDVEMYPE
Sbjct: 32  SLP--RQSKGTLKA-----KASAVGQEPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPE 91

Query: 63  VKLKPEAKKGGGGGGGGGGGSVDREYRQYDRPKTVFPAEACDDLG 107
           VKLKPEAKKG           V+REY QYD PKTVFPAEACDDLG
Sbjct: 92  VKLKPEAKKGSSVTE-----PVEREYLQYDSPKTVFPAEACDDLG 124

[Close]

BLAST of Csor.00g009710 vs. TAIR 10
Match: AT3G26740.1 (CCR-like )

HSP 1 Score: 70.5 bits (171), Expect = 9.5e-13
Identity = 40/89 (44.94%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 27  SNSTSTSHPTNKG------KAFPAEACDTVGGEACDVEMYPEVKL--KPEAKKGGGGGGG 86
           S+S+ TS P            FPAEAC+ + G AC  ++YPEVKL  KP ++        
Sbjct: 47  SSSSLTSDPNTVDYNSSILSVFPAEACEVISGYACSADIYPEVKLDTKPVSRP------- 106

Query: 87  GGGGSVDREYRQYDRPKTVFPAEACDDLG 108
                VDREY +Y+ PKTVF  EACDDLG
Sbjct: 107 VASEPVDREYEEYNSPKTVFREEACDDLG 128

The following BLAST results are available for this feature:

BLAST of Csor.00g009710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03200	2.4e-13	56.06	Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q96500	1.3e-11	44.94	Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1...	[more]

BLAST of Csor.00g009710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592823.1	1.95e-77	100.00	Light-regulated protein, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023004893.1	2.72e-32	77.03	uncharacterized protein LOC111498071 [Cucurbita maxima]	[more]
XP_022953556.1	2.38e-30	59.22	light-regulated protein-like [Cucurbita moschata] >KAG7014620.1 Light-regulated ...	[more]
XP_022991991.1	3.38e-30	55.36	light-regulated protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_023547464.1	3.38e-30	54.46	light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g009710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L0S6	1.32e-32	77.03	uncharacterized protein LOC111498071 OS=Cucurbita maxima OX=3661 GN=LOC111498071...	[more]
A0A6J1GNA5	1.15e-30	59.22	light-regulated protein-like OS=Cucurbita moschata OX=3662 GN=LOC111456061 PE=4 ...	[more]
A0A6J1JSC1	1.64e-30	55.36	light-regulated protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
Q39636	3.93e-30	59.26	CR9 protein OS=Cucumis sativus OX=3659 GN=CR9 PE=2 SV=1	[more]
A0A5D3DLY7	7.90e-30	60.95	Light-regulated protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Csor.00g009710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26740.1	9.5e-13	44.94	CCR-like	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009856	Light regulated Lir1	PFAM	PF07207	Lir1	coord: 27..107 e-value: 1.4E-26 score: 93.4
IPR009856	Light regulated Lir1	PANTHER	PTHR36762	LIGHT-REGULATED PROTEIN 1, CHLOROPLASTIC	coord: 20..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..94
None	No IPR available	PANTHER	PTHR36762:SF4	LIGHT-REGULATED PROTEIN-LIKE	coord: 20..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g009710.m01	Csor.00g009710.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast