Csor.00g009650 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g009650
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRibosome biogenesis NEP1-like protein
LocationCsor_Chr08: 151075 .. 151732 (+)
RNA-Seq ExpressionCsor.00g009650
SyntenyCsor.00g009650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCAGACCCTCTCTCACCGTGAGCCACGCCGCTTCAACCCCTTCTTTCGTCTCCTGCTTTTTGTAGGAGCATTATTCATTAATATCTGACTACCGCTGATAACGATATTGTGATGCATGCAGTCTGCGTGGAAATCAATGCTTAGGACCCAAGGGAAGCGTCGGTTAGCGTCGTCCAGCACCGCTTCCACCATTGAAAATGCTGCTACGACTTCTACGTTAATAAGCAAACCCACTATTATTGAATAGTTATAATATGTTGTGCTTGCTAATGAATGGTTGATTGTGGAACACAGGGGCAGTCCGAGTAGGAGCGAGTACATGAAGGGTGAGTACGCCCCAGTCTACATTGTGTTGGGGTTCGTAGGGATTGTTTTGATGATGGGAACCCACACGGCGAAGCAGCAGCTGCTGCATTCCCCGGTGGTCAATGTGAGCAAGAAGAAGAGGGAGAGCATCCCGGAGGTGGAGGAGCCCGACACCGTCATCAATTCCGCCGACAAGTTTATCAACAAATCCATTCTTAGGAAGGTGGCCCACATCCAGGACAACACCAAGACTGTGTAGTACGGGATCCCTTTTACCAGCTCACTTCAAGTTTACAATATTTATGTTGTTTAGTATAGTATGCCCTTTGGTTTCAGGCCCCCTAA

mRNA sequence

ATGGCTTTCAGACCCTCTCTCACCTCTGCGTGGAAATCAATGCTTAGGACCCAAGGGAAGCGTCGGTTAGCGTCGTCCAGCACCGCTTCCACCATTGAAAATGCTGCTACGACTTCTACGGGCAGTCCGAGTAGGAGCGAGTACATGAAGGGTGAGTACGCCCCAGTCTACATTGTGTTGGGGTTCGTAGGGATTGTTTTGATGATGGGAACCCACACGGCGAAGCAGCAGCTGCTGCATTCCCCGGTGGTCAATGAAGGTGGCCCACATCCAGGACAACACCAAGACTGTGTAGCCCCCTAA

Coding sequence (CDS)

ATGGCTTTCAGACCCTCTCTCACCTCTGCGTGGAAATCAATGCTTAGGACCCAAGGGAAGCGTCGGTTAGCGTCGTCCAGCACCGCTTCCACCATTGAAAATGCTGCTACGACTTCTACGGGCAGTCCGAGTAGGAGCGAGTACATGAAGGGTGAGTACGCCCCAGTCTACATTGTGTTGGGGTTCGTAGGGATTGTTTTGATGATGGGAACCCACACGGCGAAGCAGCAGCTGCTGCATTCCCCGGTGGTCAATGAAGGTGGCCCACATCCAGGACAACACCAAGACTGTGTAGCCCCCTAA

Protein sequence

MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVNEGGPHPGQHQDCVAP
Homology
BLAST of Csor.00g009650 vs. NCBI nr
Match: KAG6592829.1 (hypothetical protein SDJN03_12305, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196 bits (498), Expect = 4.82e-63
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVL 60
           MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVL
Sbjct: 1   MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVL 60

Query: 61  GFVGIVLMMGTHTAKQQLLHSPVVNEGGPHPGQHQDCVAP 100
           GFVGIVLMMGTHTAKQQLLHSPVVNEGGPHPGQHQDCVAP
Sbjct: 61  GFVGIVLMMGTHTAKQQLLHSPVVNEGGPHPGQHQDCVAP 100

BLAST of Csor.00g009650 vs. NCBI nr
Match: KAG7025237.1 (hypothetical protein SDJN02_11732 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161 bits (407), Expect = 9.07e-49
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 1  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVL 60
          MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVL
Sbjct: 1  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVL 60

Query: 61 GFVGIVLMMGTHTAKQQLLHSPVVN 85
          GFVGIVLMMGTHTAKQQLLHSPVVN
Sbjct: 61 GFVGIVLMMGTHTAKQQLLHSPVVN 85

BLAST of Csor.00g009650 vs. NCBI nr
Match: XP_023513989.1 (uncharacterized protein LOC111778418 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157 bits (397), Expect = 3.03e-47
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 0

Query: 1  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVL 60
          MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAAT+S GSPSRSEYMKGEYAPVYIVL
Sbjct: 1  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATSSKGSPSRSEYMKGEYAPVYIVL 60

Query: 61 GFVGIVLMMGTHTAKQQLLHSPVVN 85
          GFVGIVLMMGTHTAKQQLLHSPVVN
Sbjct: 61 GFVGIVLMMGTHTAKQQLLHSPVVN 85

BLAST of Csor.00g009650 vs. NCBI nr
Match: XP_023004241.1 (uncharacterized protein LOC111497635 [Cucurbita maxima])

HSP 1 Score: 152 bits (383), Expect = 4.11e-45
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 1  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVL 60
          MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAAT+S G PSRS YMKGEYAPVYIVL
Sbjct: 1  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATSSKGGPSRSVYMKGEYAPVYIVL 60

Query: 61 GFVGIVLMMGTHTAKQQLLHSPVVN 85
          GFVGIVL+MGTHTAKQQLLHSPVVN
Sbjct: 61 GFVGIVLLMGTHTAKQQLLHSPVVN 85

BLAST of Csor.00g009650 vs. NCBI nr
Match: XP_022960397.1 (uncharacterized protein LOC111461134 [Cucurbita moschata])

HSP 1 Score: 142 bits (359), Expect = 1.54e-41
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 0

Query: 7  LTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIV 66
          + SAWKSMLRTQGKRRLASSSTASTIENAAT+S GSPSRSEYMKGEYAPVYIVLGFVGIV
Sbjct: 1  MESAWKSMLRTQGKRRLASSSTASTIENAATSSKGSPSRSEYMKGEYAPVYIVLGFVGIV 60

Query: 67 LMMGTHTAKQQLLHSPVVN 85
          LMMGTHTAKQQLLHSPVVN
Sbjct: 61 LMMGTHTAKQQLLHSPVVN 79

BLAST of Csor.00g009650 vs. ExPASy TrEMBL
Match: A0A6J1KRK6 (uncharacterized protein LOC111497635 OS=Cucurbita maxima OX=3661 GN=LOC111497635 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 1.99e-45
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 1  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVL 60
          MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAAT+S G PSRS YMKGEYAPVYIVL
Sbjct: 1  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATSSKGGPSRSVYMKGEYAPVYIVL 60

Query: 61 GFVGIVLMMGTHTAKQQLLHSPVVN 85
          GFVGIVL+MGTHTAKQQLLHSPVVN
Sbjct: 61 GFVGIVLLMGTHTAKQQLLHSPVVN 85

BLAST of Csor.00g009650 vs. ExPASy TrEMBL
Match: A0A6J1H7A1 (uncharacterized protein LOC111461134 OS=Cucurbita moschata OX=3662 GN=LOC111461134 PE=4 SV=1)

HSP 1 Score: 142 bits (359), Expect = 7.46e-42
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 0

Query: 7  LTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVLGFVGIV 66
          + SAWKSMLRTQGKRRLASSSTASTIENAAT+S GSPSRSEYMKGEYAPVYIVLGFVGIV
Sbjct: 1  MESAWKSMLRTQGKRRLASSSTASTIENAATSSKGSPSRSEYMKGEYAPVYIVLGFVGIV 60

Query: 67 LMMGTHTAKQQLLHSPVVN 85
          LMMGTHTAKQQLLHSPVVN
Sbjct: 61 LMMGTHTAKQQLLHSPVVN 79

BLAST of Csor.00g009650 vs. ExPASy TrEMBL
Match: A0A1S3CBE5 (uncharacterized protein LOC103498899 OS=Cucumis melo OX=3656 GN=LOC103498899 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.33e-19
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 0

Query: 3  FRPSLTSA-WKSML---RTQGKRRLASSSTASTIE---NAATTSTGSPSRSEYMKGEYAP 62
          FR SL +  WKSML   R QG RR ASS+TA +     +++++S G    SEYMKGEYAP
Sbjct: 4  FRTSLANKMWKSMLVGTRIQGNRRFASSTTAPSANASSSSSSSSKGGSGGSEYMKGEYAP 63

Query: 63 VYIVLGFVGIVLMMGTHTAKQQLLHSPVVN 85
          +YIV+G V +V+ + THTAKQQLLHSP+VN
Sbjct: 64 IYIVMGMVAVVVSIATHTAKQQLLHSPMVN 93

BLAST of Csor.00g009650 vs. ExPASy TrEMBL
Match: A0A0A0KC39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091280 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.50e-19
Identity = 53/93 (56.99%), Postives = 67/93 (72.04%), Query Frame = 0

Query: 3  FRPSLTSA-WKSML---RTQGKRRLASSST---ASTIENAAT---TSTGSPSRSEYMKGE 62
          FR SL +  WKSML   R QG RR +SS+T   A+ I+NA++   +S G    SEYMKGE
Sbjct: 4  FRTSLANKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGE 63

Query: 63 YAPVYIVLGFVGIVLMMGTHTAKQQLLHSPVVN 85
          YAP+YIV+G V +V+ + THTAKQQLLHSP+VN
Sbjct: 64 YAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVN 96

BLAST of Csor.00g009650 vs. ExPASy TrEMBL
Match: A0A6J1D5L1 (uncharacterized protein LOC111017496 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017496 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.32e-18
Identity = 52/89 (58.43%), Postives = 62/89 (69.66%), Query Frame = 0

Query: 1  MAFRPSLTSAWKSML-----RTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAP 60
          MAFR +L   WKSML     R +GKR  ASS+TAS+          S S+SEYMKGEYAP
Sbjct: 1  MAFRRTL---WKSMLVGIPSRIEGKRCFASSTTASS---------SSSSKSEYMKGEYAP 60

Query: 61 VYIVLGFVGIVLMMGTHTAKQQLLHSPVV 84
          +YIV+G V + + +GTHTAKQQLLHSPVV
Sbjct: 61 IYIVMGMVVVAVTIGTHTAKQQLLHSPVV 77

BLAST of Csor.00g009650 vs. TAIR 10
Match: AT1G63060.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07330.1); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.0e-05
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 0

Query: 1  MAFRPSLTSAWKSMLRTQGKRRLASSSTASTIENAATTSTGSPSRSEYMKGEYAPVYIVL 60
          MAFR +      S LR  G +   S   A+T+ + A  +    S    + GE+APV I+ 
Sbjct: 1  MAFRIT------SQLRPVGNQFGGSRRFATTVADGAKQTYNKFS----IMGEFAPVAIIG 60

Query: 61 GFVGIVLMMGTHTAKQQLLHSPVVN 86
          GFVG+ ++M  H+ KQQL+H+P ++
Sbjct: 61 GFVGLAVLMAGHSLKQQLMHAPAIS 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6592829.14.82e-63100.00hypothetical protein SDJN03_12305, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7025237.19.07e-49100.00hypothetical protein SDJN02_11732 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023513989.13.03e-4797.65uncharacterized protein LOC111778418 [Cucurbita pepo subsp. pepo][more]
XP_023004241.14.11e-4594.12uncharacterized protein LOC111497635 [Cucurbita maxima][more]
XP_022960397.11.54e-4194.94uncharacterized protein LOC111461134 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A6J1KRK61.99e-4594.12uncharacterized protein LOC111497635 OS=Cucurbita maxima OX=3661 GN=LOC111497635... [more]
A0A6J1H7A17.46e-4294.94uncharacterized protein LOC111461134 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
A0A1S3CBE52.33e-1956.67uncharacterized protein LOC103498899 OS=Cucumis melo OX=3656 GN=LOC103498899 PE=... [more]
A0A0A0KC392.50e-1956.99Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091280 PE=4 SV=1[more]
A0A6J1D5L11.32e-1858.43uncharacterized protein LOC111017496 isoform X2 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
AT1G63060.14.0e-0536.47unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..46
NoneNo IPR availablePANTHERPTHR33919OS09G0127700 PROTEINcoord: 1..85
NoneNo IPR availablePANTHERPTHR33919:SF9RIBOSOME BIOGENESIS NEP1-LIKE PROTEINcoord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g009650.m01Csor.00g009650.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane