Csor.00g009000 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g009000
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	transcription factor IBH1
Location	Csor_Chr08: 519722 .. 520117 (+)
RNA-Seq Expression	Csor.00g009000
Synteny	Csor.00g009000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCCTCATCTTCTTCCCTCCGCCTAGCTCGAACCTTCCTCCGATCCTTCTCCAGGATCAAATCCCGAAGACCCACCACCGCTGCCTCTCGGTCCGCTTTCGAGCTTAGACGCCGGAGTCGACGGATAAAAATCGCAGCCTACTCCTCCATGGCACGCGCGGCTGGGCCACAACGAGCATGGGCTAGAGCCCTCCTCTTCAAGCTCAATACTCGAGCTAGACATAGGACTTTGATGAGACGCCGCCGTTCAACGATGCCCTCGGCCTACCCCGACGACCATGTCGGGAAGCTCCGCCGCTTACTTCCGGGCGGGACGGAATGGACGTGTGCACCTTGCTGGAGGAAACTGCCGACTACATCCATTGCCTCTCCGCGCAGGTTAAGGTCATGA

mRNA sequence

ATGAATTCCTCATCTTCTTCCCTCCGCCTAGCTCGAACCTTCCTCCGATCCTTCTCCAGGATCAAATCCCGAAGACCCACCACCGCTGCCTCTCGGTCCGCTTTCGAGCTTAGACGCCGGAGTCGACGGATAAAAATCGCAGCCTACTCCTCCATGGCACGCGCGGCTGGGCCACAACGAGCATGGGCTAGAGCCCTCCTCTTCAAGCTCAATACTCGAGCTAGACATAGGACTTTGATGAGACGCCGCCGTTCAACGATGCCCTCGGCCTACCCCGACGACCATGTCGGGAAGCTCCGCCGCTTACTTCCGGGCGGGACGGAATGGACGTGTGCACCTTGCTGGAGGAAACTGCCGACTACATCCATTGCCTCTCCGCGCAGGTTAAGGTCATGA

Coding sequence (CDS)

ATGAATTCCTCATCTTCTTCCCTCCGCCTAGCTCGAACCTTCCTCCGATCCTTCTCCAGGATCAAATCCCGAAGACCCACCACCGCTGCCTCTCGGTCCGCTTTCGAGCTTAGACGCCGGAGTCGACGGATAAAAATCGCAGCCTACTCCTCCATGGCACGCGCGGCTGGGCCACAACGAGCATGGGCTAGAGCCCTCCTCTTCAAGCTCAATACTCGAGCTAGACATAGGACTTTGATGAGACGCCGCCGTTCAACGATGCCCTCGGCCTACCCCGACGACCATGTCGGGAAGCTCCGCCGCTTACTTCCGGGCGGGACGGAATGGACGTGTGCACCTTGCTGGAGGAAACTGCCGACTACATCCATTGCCTCTCCGCGCAGGTTAAGGTCATGA

Protein sequence

MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGGTEWTCAPCWRKLPTTSIASPRRLRS

Homology

[Close]

BLAST of Csor.00g009000 vs. ExPASy Swiss-Prot
Match: Q7XR02 (Transcription factor IBH1 OS=Oryza sativa subsp. japonica OX=39947 GN=IBH1 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-07
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 10  LARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQRAWARALLFK 69
           LA  FLR+ SRI    P T          RR+R I+ AAYSSMARAA P+RAW+RALL +
Sbjct: 44  LAFHFLRALSRIHRATPVT----------RRTRTIRRAAYSSMARAASPRRAWSRALLGQ 103

Query: 70  LNTRARHRTLMRR-----RRSTMPSAYPDDHVGKLRRLLPGG 107
           +  R R RTLMRR     RR  + +  P     +  R++  G
Sbjct: 104 VRAR-RSRTLMRRAAVLVRRRVVAAPAPSPASARGVRIIAAG 134

[Close]

BLAST of Csor.00g009000 vs. ExPASy Swiss-Prot
Match: Q01I07 (Transcription factor IBH1 OS=Oryza sativa subsp. indica OX=39946 GN=IBH1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 45/102 (44.12%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 10  LARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQRAWARALLFK 69
           LA  FLR+ SRI    P T          RR+R I+ AAYSSMARAA P+RAW+RALL +
Sbjct: 44  LAFHFLRALSRIHRATPVT----------RRTRTIRRAAYSSMARAASPRRAWSRALLGQ 103

Query: 70  LNTRARHRTLMRR-----RRSTMPSAYPDDHVGKLRRLLPGG 107
              R R RTLMRR     RR  + +  P     +  R++  G
Sbjct: 104 ARAR-RSRTLMRRAAVLVRRRVVAAPAPSPASARGVRIIAAG 134

[Close]

BLAST of Csor.00g009000 vs. ExPASy Swiss-Prot
Match: Q9SKX1 (Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.5e-04
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 14  FLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAA-GPQRAWARALLFKLN- 73
           FL+S S ++ + P     +  +    R R+IK AAY SMARAA G  R W+RALL + + 
Sbjct: 22  FLQSLSNLRKQNPFDTPDQKNY----RVRKIKKAAYVSMARAAGGSSRLWSRALLRRADK 81

Query: 74  --------TRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGG 107
                   +R + +   +RRRS   +   ++   +LR L+PGG
Sbjct: 82  DDNKIVRFSRRKWKISSKRRRSNQRAPVVEEAAERLRNLVPGG 120

[Close]

BLAST of Csor.00g009000 vs. NCBI nr
Match: KAG6592893.1 (hypothetical protein SDJN03_12369, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (634), Expect = 8.52e-83
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQR 60
           MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQR
Sbjct: 1   MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQR 60

Query: 61  AWARALLFKLNTRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGGTEWTCAPCWRKLPT 120
           AWARALLFKLNTRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGGTEWTCAPCWRKLPT
Sbjct: 61  AWARALLFKLNTRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGGTEWTCAPCWRKLPT 120

Query: 121 TSIASPRRLRS 131
           TSIASPRRLRS
Sbjct: 121 TSIASPRRLRS 131

[Close]

BLAST of Csor.00g009000 vs. NCBI nr
Match: KAG7025295.1 (Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189 bits (479), Expect = 6.91e-59
Identity = 104/106 (98.11%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQR 60
           MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMAR AGPQR
Sbjct: 10  MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQR 69

Query: 61  AWARALLFKLNTRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGG 106
           AWARALLFKLNTRARH TLMRRRRSTMPSAYPDDHVGKLRRLLPGG
Sbjct: 70  AWARALLFKLNTRARHGTLMRRRRSTMPSAYPDDHVGKLRRLLPGG 115

[Close]

BLAST of Csor.00g009000 vs. NCBI nr
Match: XP_023005092.1 (transcription factor IBH1 [Cucurbita maxima])

HSP 1 Score: 183 bits (465), Expect = 9.35e-57
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQR 60
           MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMAR AGPQR
Sbjct: 10  MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQR 69

Query: 61  AWARALLFKLNTRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGG 106
            WARALLFKLNTRARHRT MRRR STMPSAYPDDHVGKLRRL+PGG
Sbjct: 70  TWARALLFKLNTRARHRTSMRRRCSTMPSAYPDDHVGKLRRLVPGG 115

[Close]

BLAST of Csor.00g009000 vs. NCBI nr
Match: XP_008464343.1 (PREDICTED: transcription factor IBH1 [Cucumis melo] >KAA0031737.1 transcription factor IBH1 [Cucumis melo var. makuwa] >TYK01643.1 transcription factor IBH1 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (325), Expect = 1.82e-35
Identity = 75/106 (70.75%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQR 60
           +NS+SS  R ARTFLR FSRIKS+R  T AS    +L+R+S+RIK+ AYSSMAR AGP+R
Sbjct: 11  LNSTSSRFRFARTFLRLFSRIKSQRSATFASAPPDQLKRQSQRIKMVAYSSMARVAGPRR 70

Query: 61  AWARALLFKLNTRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGG 106
           AWARALLFKL TR RHRTLMRR+R   PS  PDD VGKLRRLLPGG
Sbjct: 71  AWARALLFKLQTRPRHRTLMRRKRR--PSTSPDDQVGKLRRLLPGG 114

[Close]

BLAST of Csor.00g009000 vs. NCBI nr
Match: KAG6575326.1 (Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013866.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116 bits (290), Expect = 3.16e-30
Identity = 73/106 (68.87%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQR 60
           + S+SS+LRLARTFLRSF+ IKS+ P    S    ELRRRSRRIK+ AYSSMAR AGP+ 
Sbjct: 10  IRSTSSTLRLARTFLRSFANIKSQEPAILPSPP--ELRRRSRRIKMMAYSSMARTAGPRC 69

Query: 61  AWARALLFKLNTRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGG 106
           AWARALLFKL TRARHRTL+ RRR    S   DD VGKLRRL+PGG
Sbjct: 70  AWARALLFKLRTRARHRTLITRRRHHHRS---DDRVGKLRRLVPGG 110

[Close]

BLAST of Csor.00g009000 vs. ExPASy TrEMBL
Match: A0A6J1KS83 (transcription factor IBH1 OS=Cucurbita maxima OX=3661 GN=LOC111498183 PE=4 SV=1)

HSP 1 Score: 183 bits (465), Expect = 4.53e-57
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQR 60
           MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMAR AGPQR
Sbjct: 10  MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQR 69

Query: 61  AWARALLFKLNTRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGG 106
            WARALLFKLNTRARHRT MRRR STMPSAYPDDHVGKLRRL+PGG
Sbjct: 70  TWARALLFKLNTRARHRTSMRRRCSTMPSAYPDDHVGKLRRLVPGG 115

[Close]

BLAST of Csor.00g009000 vs. ExPASy TrEMBL
Match: A0A5D3BPL2 (Transcription factor IBH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold128G00050 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 8.81e-36
Identity = 75/106 (70.75%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQR 60
           +NS+SS  R ARTFLR FSRIKS+R  T AS    +L+R+S+RIK+ AYSSMAR AGP+R
Sbjct: 11  LNSTSSRFRFARTFLRLFSRIKSQRSATFASAPPDQLKRQSQRIKMVAYSSMARVAGPRR 70

Query: 61  AWARALLFKLNTRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGG 106
           AWARALLFKL TR RHRTLMRR+R   PS  PDD VGKLRRLLPGG
Sbjct: 71  AWARALLFKLQTRPRHRTLMRRKRR--PSTSPDDQVGKLRRLLPGG 114

[Close]

BLAST of Csor.00g009000 vs. ExPASy TrEMBL
Match: A0A1S3CLD3 (transcription factor IBH1 OS=Cucumis melo OX=3656 GN=LOC103502249 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 8.81e-36
Identity = 75/106 (70.75%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQR 60
           +NS+SS  R ARTFLR FSRIKS+R  T AS    +L+R+S+RIK+ AYSSMAR AGP+R
Sbjct: 11  LNSTSSRFRFARTFLRLFSRIKSQRSATFASAPPDQLKRQSQRIKMVAYSSMARVAGPRR 70

Query: 61  AWARALLFKLNTRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGG 106
           AWARALLFKL TR RHRTLMRR+R   PS  PDD VGKLRRLLPGG
Sbjct: 71  AWARALLFKLQTRPRHRTLMRRKRR--PSTSPDDQVGKLRRLLPGG 114

[Close]

BLAST of Csor.00g009000 vs. ExPASy TrEMBL
Match: A0A0A0KDQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020740 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.61e-23
Identity = 63/106 (59.43%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 1   MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQR 60
           +NS+SS L  ART              T AS    +L+R+SRRIK+AAYSSMAR AG +R
Sbjct: 11  LNSTSSRLCFART------------SATFASAPPDQLKRQSRRIKMAAYSSMARVAGRRR 70

Query: 61  AWARALLFKLNTRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGG 106
           AWARALLF+L+TR RH+TLMRR+R   PS   DD VGKLRRLLPGG
Sbjct: 71  AWARALLFRLHTRPRHKTLMRRKRR--PSTSSDDMVGKLRRLLPGG 102

[Close]

BLAST of Csor.00g009000 vs. ExPASy TrEMBL
Match: A0A2N9I4P0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46872 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.70e-17
Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 1   MNSSSSSLRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAAGPQR 60
           +N++S  ++ AR F+R+ S++K    T  +S S  E+R+RS+RIKIAAYSSMA A G ++
Sbjct: 8   LNTNSRRIKFARRFIRTLSKMKK---TAPSSSSIDEVRKRSQRIKIAAYSSMAHAVGSKK 67

Query: 61  AWARALLFKLNTRARHRTLMRRRRST---MPSAYPDDHVG------KLRRLLPGG 106
           AW+RA+LFKL  RARH+ +M RRRS       A  +D  G      KLR+L+PGG
Sbjct: 68  AWSRAILFKLRNRARHQGMMMRRRSIGFKKKRAIKNDPPGEQNQTKKLRQLVPGG 119

[Close]

BLAST of Csor.00g009000 vs. TAIR 10
Match: AT2G43060.1 (ILI1 binding bHLH 1 )

HSP 1 Score: 44.7 bits (104), Expect = 6.8e-05
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 14  FLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARAA-GPQRAWARALLFKLN- 73
           FL+S S ++ + P     +  +    R R+IK AAY SMARAA G  R W+RALL + + 
Sbjct: 22  FLQSLSNLRKQNPFDTPDQKNY----RVRKIKKAAYVSMARAAGGSSRLWSRALLRRADK 81

Query: 74  --------TRARHRTLMRRRRSTMPSAYPDDHVGKLRRLLPGG 107
                   +R + +   +RRRS   +   ++   +LR L+PGG
Sbjct: 82  DDNKIVRFSRRKWKISSKRRRSNQRAPVVEEAAERLRNLVPGG 120

The following BLAST results are available for this feature:

BLAST of Csor.00g009000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XR02	7.1e-07	44.12	Transcription factor IBH1 OS=Oryza sativa subsp. japonica OX=39947 GN=IBH1 PE=1 ...	[more]
Q01I07	1.2e-06	44.12	Transcription factor IBH1 OS=Oryza sativa subsp. indica OX=39946 GN=IBH1 PE=3 SV...	[more]
Q9SKX1	9.5e-04	34.95	Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1	[more]

BLAST of Csor.00g009000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592893.1	8.52e-83	100.00	hypothetical protein SDJN03_12369, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025295.1	6.91e-59	98.11	Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023005092.1	9.35e-57	95.28	transcription factor IBH1 [Cucurbita maxima]	[more]
XP_008464343.1	1.82e-35	70.75	PREDICTED: transcription factor IBH1 [Cucumis melo] >KAA0031737.1 transcription ...	[more]
KAG6575326.1	3.16e-30	68.87	Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]

BLAST of Csor.00g009000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KS83	4.53e-57	95.28	transcription factor IBH1 OS=Cucurbita maxima OX=3661 GN=LOC111498183 PE=4 SV=1	[more]
A0A5D3BPL2	8.81e-36	70.75	Transcription factor IBH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CLD3	8.81e-36	70.75	transcription factor IBH1 OS=Cucumis melo OX=3656 GN=LOC103502249 PE=4 SV=1	[more]
A0A0A0KDQ3	1.61e-23	59.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020740 PE=4 SV=1	[more]
A0A2N9I4P0	1.70e-17	47.83	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46872 PE=4 SV=1	[more]

BLAST of Csor.00g009000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43060.1	6.8e-05	34.95	ILI1 binding bHLH 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124:SF76	TRANSCRIPTION FACTOR IBH1-LIKE	coord: 2..107
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 2..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g009000.m01	Csor.00g009000.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding