Csor.00g008660 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCTTCATTGACCCTCCCATTGAAAAAGCCAAGAAATTCCTCAAGGCTATGGAGTGTAAAGGAGAGGAAACAAAGCCAAATTCTTCACTTGCAAAGCTACCTCTCTTTTCAATCCCACACGAAGCAATGGACTCGCCCGAGCGCTCGGGGGCGTTAACTCCGCCAATCTACTCCGCCGTCTCGGTCCCGTTTTGGTGGGAAGAAGAGCCCGGCAAGCCTAGGTTTAGTAACGTCGCCACCACCACCACCAACACCAACACCGACACCGACACTGTCACGTCTCCGTGCCTAGAGCTACCTCCAAGGCTTTTGTTAATGGAGAAAGTGGGAAGATCTGAGGGCTCTTCCTTTAGAATGATGGGGTCTGATGAGATGAGTTCTTTGTTCATGAAGAGAAGAGGTTGGTTTGGTTCATGGAGAAGAAGCAAAAGAGATGAAGTGTTTCCTTCCTTGGAATGGGAAGTGGAAGCTTCAAGGCTTAGAAGAAATGGGAGCTTTTCAAGCCTTATAAGAACACAAATTAGGCCTCATTTTTGGGTAACTCTTTGTTTCTTTGATCTCTTTAATGGGTTTTGTTTGCTTTTAATCATAGCTTTTGGTGTTATAGGTAAGTGTTTGTGAAGGTTTGAAGCATGTGGTTCCATCATGGAGAGGCAAAAGACTAAAGAAAGACGTTTAG ATGCTCTTCATTGACCCTCCCATTGAAAAAGCCAAGAAATTCCTCAAGGCTATGGAGTGTAAAGGAGAGGAAACAAAGCCAAATTCTTCACTTGCAAAGCTACCTCTCTTTTCAATCCCACACGAAGCAATGGACTCGCCCGAGCGCTCGGGGGCGTTAACTCCGCCAATCTACTCCGCCGTCTCGGTCCCGTTTTGGTGGGAAGAAGAGCCCGGCAAGCCTAGGTTTAGTAACGTCGCCACCACCACCACCAACACCAACACCGACACCGACACTGTCACGTCTCCGTGCCTAGAGCTACCTCCAAGGCTTTTGTTAATGGAGAAAGTGGGAAGATCTGAGGGCTCTTCCTTTAGAATGATGGGGTCTGATGAGATGAGTTCTTTGTTCATGAAGAGAAGAGGTTGGTTTGGTTCATGGAGAAGAAGCAAAAGAGATGAAGTGTTTCCTTCCTTGGAATGGGAAGTGGAAGCTTCAAGGCTTAGAAGAAATGGGAGCTTTTCAAGCCTTATAAGAACACAAATTAGGCCTCATTTTTGGGTAAGTGTTTGTGAAGGTTTGAAGCATGTGGTTCCATCATGGAGAGGCAAAAGACTAAAGAAAGACGTTTAG ATGCTCTTCATTGACCCTCCCATTGAAAAAGCCAAGAAATTCCTCAAGGCTATGGAGTGTAAAGGAGAGGAAACAAAGCCAAATTCTTCACTTGCAAAGCTACCTCTCTTTTCAATCCCACACGAAGCAATGGACTCGCCCGAGCGCTCGGGGGCGTTAACTCCGCCAATCTACTCCGCCGTCTCGGTCCCGTTTTGGTGGGAAGAAGAGCCCGGCAAGCCTAGGTTTAGTAACGTCGCCACCACCACCACCAACACCAACACCGACACCGACACTGTCACGTCTCCGTGCCTAGAGCTACCTCCAAGGCTTTTGTTAATGGAGAAAGTGGGAAGATCTGAGGGCTCTTCCTTTAGAATGATGGGGTCTGATGAGATGAGTTCTTTGTTCATGAAGAGAAGAGGTTGGTTTGGTTCATGGAGAAGAAGCAAAAGAGATGAAGTGTTTCCTTCCTTGGAATGGGAAGTGGAAGCTTCAAGGCTTAGAAGAAATGGGAGCTTTTCAAGCCTTATAAGAACACAAATTAGGCCTCATTTTTGGGTAAGTGTTTGTGAAGGTTTGAAGCATGTGGTTCCATCATGGAGAGGCAAAAGACTAAAGAAAGACGTTTAG MLFIDPPIEKAKKFLKAMECKGEETKPNSSLAKLPLFSIPHEAMDSPERSGALTPPIYSAVSVPFWWEEEPGKPRFSNVATTTTNTNTDTDTVTSPCLELPPRLLLMEKVGRSEGSSFRMMGSDEMSSLFMKRRGWFGSWRRSKRDEVFPSLEWEVEASRLRRNGSFSSLIRTQIRPHFWVSVCEGLKHVVPSWRGKRLKKDV Homology
BLAST of Csor.00g008660 vs. ExPASy Swiss-Prot
Match: Q9M160 (Uncharacterized protein At4g00950 OS=Arabidopsis thaliana OX=3702 GN=At4g00950 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 3.2e-06 Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 0
BLAST of Csor.00g008660 vs. NCBI nr
Match: KAG6592927.1 (hypothetical protein SDJN03_12403, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 415 bits (1067), Expect = 1.84e-146 Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
BLAST of Csor.00g008660 vs. NCBI nr
Match: KAG7025335.1 (hypothetical protein SDJN02_11830, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 408 bits (1048), Expect = 1.40e-143 Identity = 201/203 (99.01%), Postives = 202/203 (99.51%), Query Frame = 0
BLAST of Csor.00g008660 vs. NCBI nr
Match: XP_023513857.1 (uncharacterized protein LOC111778333 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 386 bits (991), Expect = 7.38e-135 Identity = 191/203 (94.09%), Postives = 193/203 (95.07%), Query Frame = 0
BLAST of Csor.00g008660 vs. NCBI nr
Match: XP_023005080.1 (uncharacterized protein LOC111498174 [Cucurbita maxima] >XP_023005081.1 uncharacterized protein LOC111498174 [Cucurbita maxima]) HSP 1 Score: 378 bits (970), Expect = 1.02e-131 Identity = 188/203 (92.61%), Postives = 193/203 (95.07%), Query Frame = 0
BLAST of Csor.00g008660 vs. NCBI nr
Match: XP_022960155.1 (uncharacterized protein At4g00950-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 360 bits (924), Expect = 5.74e-125 Identity = 177/186 (95.16%), Postives = 179/186 (96.24%), Query Frame = 0
BLAST of Csor.00g008660 vs. ExPASy TrEMBL
Match: A0A6J1KTY4 (uncharacterized protein LOC111498174 OS=Cucurbita maxima OX=3661 GN=LOC111498174 PE=4 SV=1) HSP 1 Score: 378 bits (970), Expect = 4.93e-132 Identity = 188/203 (92.61%), Postives = 193/203 (95.07%), Query Frame = 0
BLAST of Csor.00g008660 vs. ExPASy TrEMBL
Match: A0A6J1H8B1 (uncharacterized protein At4g00950-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460982 PE=4 SV=1) HSP 1 Score: 360 bits (924), Expect = 2.78e-125 Identity = 177/186 (95.16%), Postives = 179/186 (96.24%), Query Frame = 0
BLAST of Csor.00g008660 vs. ExPASy TrEMBL
Match: A0A6J1H6U8 (uncharacterized protein At4g00950-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460982 PE=4 SV=1) HSP 1 Score: 313 bits (801), Expect = 8.01e-107 Identity = 155/166 (93.37%), Postives = 158/166 (95.18%), Query Frame = 0
BLAST of Csor.00g008660 vs. ExPASy TrEMBL
Match: A0A0A0KDR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103510 PE=4 SV=1) HSP 1 Score: 217 bits (552), Expect = 1.67e-68 Identity = 125/206 (60.68%), Postives = 141/206 (68.45%), Query Frame = 0
BLAST of Csor.00g008660 vs. ExPASy TrEMBL
Match: A0A1S3CBE3 (uncharacterized protein At4g00950 OS=Cucumis melo OX=3656 GN=LOC103498800 PE=4 SV=1) HSP 1 Score: 213 bits (542), Expect = 5.89e-67 Identity = 125/206 (60.68%), Postives = 142/206 (68.93%), Query Frame = 0
BLAST of Csor.00g008660 vs. TAIR 10
Match: AT4G27810.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53030.1); Has 73 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 66.2 bits (160), Expect = 3.4e-11 Identity = 62/176 (35.23%), Postives = 80/176 (45.45%), Query Frame = 0
BLAST of Csor.00g008660 vs. TAIR 10
Match: AT2G46535.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF688) (TAIR:AT3G61840.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 55.5 bits (132), Expect = 6.0e-08 Identity = 46/162 (28.40%), Postives = 73/162 (45.06%), Query Frame = 0
BLAST of Csor.00g008660 vs. TAIR 10
Match: AT4G00950.1 (Protein of unknown function (DUF688) ) HSP 1 Score: 53.5 bits (127), Expect = 2.3e-07 Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 0
BLAST of Csor.00g008660 vs. TAIR 10
Match: AT5G53030.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06 Identity = 34/79 (43.04%), Postives = 40/79 (50.63%), Query Frame = 0
BLAST of Csor.00g008660 vs. TAIR 10
Match: AT5G53030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06 Identity = 34/79 (43.04%), Postives = 40/79 (50.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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