Csor.00g008640 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g008640
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RNA-binding KH domain-containing protein
Location	Csor_Chr08: 755788 .. 762354 (+)
RNA-Seq Expression	Csor.00g008640
Synteny	Csor.00g008640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCAGGTGATATCCCGGTGTACCCTTCCATGCCGGCCAAGGCTCCCTTGCCTCTACCCGGGACTGTGTTGGTTTCCAAGCCCGGACATGCCGTCACCGGCAAACGCCGCCGTGAGGACGATCCGATCGTCCCCTATTCGGAGGCCGTAGATGTGTCGGCACCCAAGAGACAGGCGAAGGCCCATGACGTGCTTTTTAGAATCGTTGTGCCCTCGAAGCAGATCGGGAAGGTTATTGGCAAAGTCGGTTGCCGAATTCAGAAGGTTCGTGAGGAGACCAAAGCTACAATCAAAATTGCGGATGCAGTCGCGGTATGGTTTTGTATTTGATTTTGAGTGCTTCGGTTTAGGGTTTTCGTTTTGTATTTTGTAGTTTTTTGTTGCTTTCTTTCCTTCGTTCGGCTATCGGGGAAGTGTTGAAGTCAAGCTTTATGTGTGTTTCACTATGTTGAATTTTAGTGGTTTTTTTTTTCTTCTCTTAACTCTTTTGCTGGTTGTGTTGTATGCCAAATGGTCGTCGAATGGATGAAAATTTGGGGTTCTCTGTTGTTTCAGCGGTACGAAGAACGTGTTATCATTATAAGTTCAAAGGACAAAGAGAATACGGTTACTGATGCGGAGATAGCACTCCAGCAAATTGCAGCACTGATATTAAAGGTAATTCATGGCTAATTGCTTAACTTTGCTGTAGAGATGATATATTTATTGTCCTATGTAGCTGCCCGAAGTTGGGGTCTAGGCCTTTTGCATGTGTTGATCTTATTTGCTAATCATAAAGATGGTGCATTTTGGATTATGATATGTTTCCTTTGTTCCCTGTCAATAAAGATTTTCTTCGATTATGATTCATAATCTACTTAATCACCCAAACTTAAAAAGTTGGATGTCATGACTGAACCCCTTGGATATAAGGTAGAGAATGTGAGTTTAAAAAACTTGGATCGACTTCCCTAAATACCGAAAAGGTTGAAATATATGATTACAAATATACCGCTAGTGTACTGTTTCATAAATGCTGAAAAGTTGGTTGAAGTATACGATTACAAATTCTGGTAGTATGATTGAAAGGTTAATGTTCTAGTTAATTGCACCTTGAATATGTAGGGGATCTTAATTGATTGCATGGACTTAAATGATCACTCATTTTACATTTTTGTGCAGTATTGTGTAGCCTTCTTAATGGGTTTAAGTTTTTAAGTGATCCTTACCATCATTAATAGGTGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGACTTTCATTTTCCTTAAATAAATGTTCCTCCACATATTGGTTTACCTTTTTCCTTTCCCCTTCCTTTCTTGGACATGATTGGAAAGCCAAAGTTCTTTTAATTTGACATATTCCTCACTCACTTAAGAATCGTGAGGAATTCTCAATGAGAAGGTGTTGAGGAGTGAATGGGGTCGAGATTTGGTGAGATGGGAAGTTGAATCAAGGGGTTCAAGGAGGATGGGTAAGATATAGGGAGGCAGATAGGAACTTAACTTGCTCCATTGGCATGTATAATGGGGTAGTGATAATGATTGATGGAAGTAATGGGCGGTAATGACTTAAGAAAATATTGTGTTATAGACGAAAATTCAAAATTTTTTATCAGAGAATCTAGTCCATATTGACTGCCTAAAAAATTATGATCAATAAACCACATGTTAGATGAAAATAAAAAGACAACACTCGAAGTTATTGACTTTCAAGGCAAGGCTGGGCAAGGCAAGTAACAGCTCTTCCATCATGTGATTGGTTCTTTTTTCTTTCTTTCTTTCTTTTTTAAGTAACTATGTGCTTTTGAGCTAGCTTGCGTCCACCTTGAAAAATCATACCTATCACTGTAACATTTGATGTTAGGAATTTGTAGTATATTTGACAACTCAGAACTTAGATAGGCAGCCATCAGCATTTTAACCTACAAGTATGGATTGCTAACTTTCTCAAATAACCTGTCCATATTTGATCAATTACATTAGTCTCTTTCTTGAAGTTCTGATGTTCTCGTGATAGGATTATAGCTTCTGTCATTTGTTTTAGATCATTTTTGTGAATTTTGTATTTCCTGCTTTTGTTTTTATTTATTTATTTAATTATACTTTCAGTTATATTTTTACAGGAAGATGGTACAAGCATTGAGGAGCTAAAAGTTGGAACAGGGCATGTGGCTGCCAATACTATAAGGCTCCTTATTGCTGGATCCCAAGCAGGTTCTTTGATTGGTGCCTCAGGTCAAAATATTGAGAAATTAAGGAATTCTTCTGGTGCGTCAGTTACAATCCTTGCCCCAAATCAGTTACCTCTTTGTGCGTCTGCTCATGAATCTGACCGAGTGGTGCAGGTGAACTTTTCCACATTGTTCTCAGATGTTAGAACATAGATATTTTACCATTCTTTCTGCCTTCCGATCATGTTCATCACTTTTTGTTTGTATCGTAATGAATGACCAGTGTTACAGCTATTATTGATGCTATGTGATTTTAAAATTGAGCGAGATATTTTAGTAGCTGTCAATTGAAATTAGTGAGGTGAAAACAATCTCTTCGTTTTACTCTGGGCATCAGTGATGTAATCACTCTTTAGGTATTGTCTAACTTGATTGACAGAAAACCCATAGGAAGACTTCCACTTTTTTGGGTACTCTAGCCCCCCAAATCGCTTTTAACAGAGTAACGTCAACAGTCGCTTGATGATCATAAAGTTCAGGAGCTAAGGAGTTGAGAAAACTGTTTGTCAATGTTAAGGATCCACGATTTGGATCCCTTCACATTCGATGGGCGCTTTGCTCAAGGAGGCCATGGAGCTCAATGCATTCTAAAGTTTCTTCATCAGTCCAATTCCTTCTTAGAGGAACAATCCAATCGTTGGAAGAGGAGGAACAACATTGGGTCAATAAAACTATCTTTAGACCATGCAACATTAAAAATTTGAGGAAAAGATGATTTAAGGGCCTGTTCATTCACATCCACTTATCTACCCAAAACCGGATCTTGTAGCCCTTGCCATAGTTGATTTGAGAAGCAGTTCCATTTGGGATTTTTAAGATTGGCATTAGAAGATGAAGTTACACTGTTTCTTTCTAGGTTTGGATATTCTATTGCTGCTTGCTTGGGAAGGTGAACTTAGAAGTGTTAGGGAATGGAAATTGGTCTTAGAAATGAGAATGCTGCTAGAAATTTTCCGCCAGCCTTATTCTTCAAGATACATTTCTTGTTAATAATTTTAATTTTACATACTATGAATCATTTAATTTCAAGTATTTTAATCATTCTTAAACGTGCACATAACTATTTACCGAATAGATCATCTATTGAATTTTATGCAAATGTTGTGAAATTGTCATTCTCCTTCTCTCACATTGCTAGGTTACTTTTCTTGATGTCTTGATCTCACATTACACTCATTTAATCTCACTTTTTGATGCATCCAAGATCATGTTATTAAGAGCTGGCACTGACGATCGACTTTGTTTTGTCTGGAACTTAGATATCAGGGGATGTTCTTGCAGTTTTGAAGGCTCTCGAGGAGATAGGCAATCAGCTAAGGTCTGGTATTGAATATTGTTTCAGAGTTCACCTGATTCATGTGCACTTCTGAAACTGTTACTTAAACTACACTCATTTTCTGGTCACAAGATGATTGCAGTAGACGTTTCTTGAGATAAGTCAAATCTCGGTTTTTTTTTGTTGGTAGTGATTTGGGCTTTAATTTTCAGGGTAAATCCTCCTCGGCAAGTCATTTCTGTTAGCCCAACATATAATTATAATGCAATACATCCGCCACAGTCATATATGGATCCAACCTCAGGTTATTCACTGGTTTCTGTATCAAATAAATTCTTTCTGATTCTGTCTTTTGCATCTGAAGTTTTAATATTTTTTCTTCTAACCACATCATCTTTAGGAAAATCAATCTTGCAGTTAATTATGTAACCTTTGAAATGTTGATATCGGAGACGTTGGTGGGTGGGTTGATTGGGATTGGTGGCTTCAACATATCAAGAATCAGAAATGAATCTGGCGCAACAATCAAGGTCAGCAAACCCGGCAGATTTAATTTCATTATGAAAGGTCTTGAAATTCTGTTCCTAAAACTTATATCCTTACACTATTCTTCACAGGTTTGTGGTGGAAGAGGTGAACAAAATTACAGGCAATTACAATTCGGTGGAAGTGCTGAACAGGCATGACTTTTTCTCTTACTTTTAGGTTTCATGAACTAGCACTAATTCATGCGATGGGCAGGAGGGTGATCTTATATCATTAAAACTGTCAGATTCTAAGACTTGGTATACTAATTATATTATTTTTATTGTAATATAATGTAGGCTGGGTATATATATATATTAGCTTCCATACATAGATATCCGTACTCATGTTTTTATACACCTTGCTTTTTTGTTGTTTGGGTTTTATTTCTGTAAAAGATTCAACAGCTGAAAGTAGCAATTTTAAAAACTTACACTCATGAAACATGCAAATAGAAGGAATGAATTGGACATCAAAAGAATCTACCTGTAAGTTGTTTAAGTCAAAATCATTTATACCAAAGACGTATACCTTCGAAATTTAAGATCTAAAACTCGAGTATCGAGTAATGATGTATATTTGTCACTGATTACCTGTAAGTTGTTTAAGTCAAAATCATTTATACCAAAGACGTATACCTTCGAAATTTAAGGTCTAAAACTCGAGTATCGAGTAATGATGTATATTTGTCACTGATTACCTGTAAGTTGTTTAAGTCAAAATCATTTATACCAAAGACGTATACCTTCGAAATTTAAGGTCTAAAACTCGAGTATCGAGTAATGATGTATATTTGTCACTGATTACCTGTAAGTTGTTTAAGTCAAAATCATTTATACCAAAGACGTATACCTTCGAAATTTAAGGTCTAAAACTCGAGTATCGAGTAATGATGTATATTTGTCACTGATTACCTGTAAGTTGTTTAAGTCAAAATCATTTATACCAAAGACGTATACCTTCGAAATTTAAGGTCTAAAACTCGAGTATCGAGTAATGATGTATATTTGTCACTGATTACCGAAACATATGATTTAGGAGGTGCCAGAAGTTGACTAACCTCTACTTTTGGAGATAGGTGACAGAAGTAGAGTAGCCTTATAATATCTTTCTAGTGTGTTTTTTTTAATACAATTCTTCGTTCTTATTTGTATTATTTTCTGGTGAAGGATCTTCATGTTGAATTGTTTGGACGGTTTACAGGTAGCATTGGCTAAGCAGAGGGTTGATGAATATATTTATTCTCAGTTGATGCGACAAGCTGGTGTTCAACCGACAGCGTAAGTTTTCCTTCAACTCTCTCTCTCTGAAATAACTTTCCTTTGGTGAAGCCATAGTCTAAGTTCTATGGTCTTATCCCACAAGAAAAATTAAAATTGAATTAAAAGTTTCATACAAATCGAACTTCTATGTTCCTAACAGAAAATTCAAGACGCTAAGTTGTTCTCTGTAATACTCTTTAACAGAGGCAAAAAATGACTAATACTTCAATTTCCACCAGTACTTGAAATAAACGGTAAAATGAATGATAAGACTTTGTCAAGCCATTCAATGTTTAATATTTAGAATCATGGACATGGAGGGTGAGTTCGTGATGATTTTTGGAAAGGTAAGATGTTTTTAGTCGTTTCGGATTCACAAACTTAGAAAATAGAAATGTCCTAATCACACTAAACTTAAAAGTGCTTCAAAATTTTAGGCTAAATTATCGAACTTTCGATAATAACCTTAGCTTCCATAAAAAGTTCAAAAATAAGATCGTTAGTACTTTCTTTTCTTGAACTTTCAAAAGTTTTATTAATATCTTGACTTTTTATGGTTAGTATAGGAATGAAAACTCTTTCATCTTCGCGTTCTTCATTTTTTTTTTCCTAAATATCAAAATTTGGAGAGGTTCTCTAATTTTTTAGCCTTCTCAATTATAAATATAGAAAGGTATTAAATTTCTATGACATCAGAACTCTATTTCTTGTTGCAATTTGAGGCTATTCTTGAATGTATTGTTTCATCTGCTATATTTTATGAACTTCAACGCATTCTGTGGAAGAAAAATTATCTTCTTTTTACGTTTAAGGTGAGTTCCTCTCAAATGTTTCTGTTATTTCAACCATGACAGTCACAAGTGTTTCACAAATTGAATGAGAAATTGTCTTATAAATATGATTGTGCTTTGTTTCAAACTGAACTAGATAGTTTCAAATGTTTCAACTTAGTAACCCTACAATTTGGAACAATCTTGGCATCTTTGCATTCATCAAATATTTGACCATTTTCATCTGTCATGATTCCTTTTGATATCAGTTCATTTCCTCTATTAGTAGTTTCGAAAGAAAGCACGACAAATATGCCAGTTTAGGGATTAAATTGAAACTTTTAGAACCATCAGAACTAACAACGTATTATATGAGTTAAAACGATAATTAAGCCAAATATTATCGGGTTCTTCTACTGCTAACGAACAAGAAATTTGAGTGTGTTAGCTCATATGGTACATCATTGTTGTTCAGTCTGCAGATGTGGTAA

mRNA sequence

ATGCAGTCAGGTGATATCCCGGTGTACCCTTCCATGCCGGCCAAGGCTCCCTTGCCTCTACCCGGGACTGTGTTGGTTTCCAAGCCCGGACATGCCGTCACCGGCAAACGCCGCCGTGAGGACGATCCGATCGTCCCCTATTCGGAGGCCGTAGATGTGTCGGCACCCAAGAGACAGGCGAAGGCCCATGACGTGCTTTTTAGAATCGTTGTGCCCTCGAAGCAGATCGGGAAGGTTATTGGCAAAGTCGGTTGCCGAATTCAGAAGGTTCGTGAGGAGACCAAAGCTACAATCAAAATTGCGGATGCAGTCGCGCGGTACGAAGAACGTGTTATCATTATAAGTTCAAAGGACAAAGAGAATACGGTTACTGATGCGGAGATAGCACTCCAGCAAATTGCAGCACTGATATTAAAGGAAGATGGTACAAGCATTGAGGAGCTAAAAGTTGGAACAGGGCATGTGGCTGCCAATACTATAAGGCTCCTTATTGCTGGATCCCAAGCAGGTTCTTTGATTGGTGCCTCAGGTCAAAATATTGAGAAATTAAGGAATTCTTCTGGTGCGTCAGTTACAATCCTTGCCCCAAATCAGTTACCTCTTTGTGCGTCTGCTCATGAATCTGACCGAGTGGTGCAGATATCAGGGGATGTTCTTGCAGTTTTGAAGGCTCTCGAGGAGATAGGCAATCAGCTAAGGGTAAATCCTCCTCGGCAAGTCATTTCTGTTAGCCCAACATATAATTATAATGCAATACATCCGCCACAGTCATATATGGATCCAACCTCAGTTAATTATGTAACCTTTGAAATGTTGATATCGGAGACGTTGGTGGGTGGGTTGATTGGGATTGGTGGCTTCAACATATCAAGAATCAGAAATGAATCTGGCGCAACAATCAAGGTTTGTGGTGGAAGAGGTGAACAAAATTACAGGCAATTACAATTCGGTGGAAGTGCTGAACAGGTAGCATTGGCTAAGCAGAGGGTTGATGAATATATTTATTCTCAGTTGATGCGACAAGCTGGTGTTCAACCGACAGCTCTGCAGATGTGGTAA

Coding sequence (CDS)

ATGCAGTCAGGTGATATCCCGGTGTACCCTTCCATGCCGGCCAAGGCTCCCTTGCCTCTACCCGGGACTGTGTTGGTTTCCAAGCCCGGACATGCCGTCACCGGCAAACGCCGCCGTGAGGACGATCCGATCGTCCCCTATTCGGAGGCCGTAGATGTGTCGGCACCCAAGAGACAGGCGAAGGCCCATGACGTGCTTTTTAGAATCGTTGTGCCCTCGAAGCAGATCGGGAAGGTTATTGGCAAAGTCGGTTGCCGAATTCAGAAGGTTCGTGAGGAGACCAAAGCTACAATCAAAATTGCGGATGCAGTCGCGCGGTACGAAGAACGTGTTATCATTATAAGTTCAAAGGACAAAGAGAATACGGTTACTGATGCGGAGATAGCACTCCAGCAAATTGCAGCACTGATATTAAAGGAAGATGGTACAAGCATTGAGGAGCTAAAAGTTGGAACAGGGCATGTGGCTGCCAATACTATAAGGCTCCTTATTGCTGGATCCCAAGCAGGTTCTTTGATTGGTGCCTCAGGTCAAAATATTGAGAAATTAAGGAATTCTTCTGGTGCGTCAGTTACAATCCTTGCCCCAAATCAGTTACCTCTTTGTGCGTCTGCTCATGAATCTGACCGAGTGGTGCAGATATCAGGGGATGTTCTTGCAGTTTTGAAGGCTCTCGAGGAGATAGGCAATCAGCTAAGGGTAAATCCTCCTCGGCAAGTCATTTCTGTTAGCCCAACATATAATTATAATGCAATACATCCGCCACAGTCATATATGGATCCAACCTCAGTTAATTATGTAACCTTTGAAATGTTGATATCGGAGACGTTGGTGGGTGGGTTGATTGGGATTGGTGGCTTCAACATATCAAGAATCAGAAATGAATCTGGCGCAACAATCAAGGTTTGTGGTGGAAGAGGTGAACAAAATTACAGGCAATTACAATTCGGTGGAAGTGCTGAACAGGTAGCATTGGCTAAGCAGAGGGTTGATGAATATATTTATTCTCAGTTGATGCGACAAGCTGGTGTTCAACCGACAGCTCTGCAGATGTGGTAA

Protein sequence

MQSGDIPVYPSMPAKAPLPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPRQVISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW

Homology

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BLAST of Csor.00g008640 vs. ExPASy Swiss-Prot
Match: Q9SZH4 (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 GN=PEP PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.3e-17
Identity = 57/171 (33.33%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 64  DVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENTV 123
           D +FR++VP  ++G +IG+ G  I+K+ EET+A IK+ D      +R+++IS K++    
Sbjct: 73  DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132

Query: 124 TDAEIALQQIAALILKEDG-TSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEK 183
                A+  +  +  +  G    ++  V       +++RLL+A +QA +LIG  G  I+ 
Sbjct: 133 MSP--AMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKS 192

Query: 184 LRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLR 234
           +  +SGASV IL+  + P  A+  + +R+V + G+ L +LKALE I   LR
Sbjct: 193 IVENSGASVRILSEEETPFYAA--QDERIVDLQGEALKILKALEAIVGHLR 239

[Close]

BLAST of Csor.00g008640 vs. ExPASy Swiss-Prot
Match: Q9SR13 (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.9e-15
Identity = 65/207 (31.40%), Postives = 113/207 (54.59%), Query Frame = 0


Query: 40  EDDPIVP-YSEAVDVSAPKRQAKA-----------HDVLFRIVVPSKQIGKVIGKVGCRI 99
           ED+  +P + E++  S P+  A              + +FR++VP++++G +IG+ G  I
Sbjct: 150 EDEEGIPEHLESLQKSEPEEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVI 209

Query: 100 QKVREETKATIKIADAVARYEERVIIISSKDK-ENTVTDAEIALQQIAALILKEDGTSIE 159
           +K+ EET+A IKI D      ER +++S K++ E+++  +   L ++   I+  DG   E
Sbjct: 210 KKIVEETRARIKILDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIV--DGLDGE 269

Query: 160 ELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASVTILAPNQLPLCASAH 219
             +       +   RLL+  SQAGSLIG  G  ++ ++ +S   V +L    LP+ A   
Sbjct: 270 ASQAPPPSKVST--RLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFAL-- 329

Query: 220 ESDRVVQISGDVLAVLKALEEIGNQLR 234
           + DRVV++ G+  +V +ALE I + LR
Sbjct: 330 QDDRVVEVVGEPTSVHRALELIASHLR 350

[Close]

BLAST of Csor.00g008640 vs. ExPASy Swiss-Prot
Match: P57723 (Poly(rC)-binding protein 4 OS=Homo sapiens OX=9606 GN=PCBP4 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-12
Identity = 79/320 (24.69%), Postives = 143/320 (44.69%), Query Frame = 0


Query: 68  RIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENTVTDAE 127
           R+++  K++G +IGK G  ++++RE++ A I I++            S  ++  T+T + 
Sbjct: 21  RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGST 80

Query: 128 IALQQIAALILKEDGTSIEELKVGTGHVAAN--TIRLLIAGSQAGSLIGASGQNIEKLRN 187
            A+    ++I  +    +       G+V+    T+RL+I  SQ GSLIG +G  I+++R 
Sbjct: 81  AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 140

Query: 188 SSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPR-QVISVS 247
           ++GA V + A + LP     + ++R V +SG   A++  + +I   +  +PP+   I   
Sbjct: 141 TTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYH 200

Query: 248 PTYN-----------------YNAIHPPQ-SYMDPTSVNYVTF----------------- 307
           P+ +                 Y A+ P + + +   S + V F                 
Sbjct: 201 PSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSS 260

Query: 308 -EMLISETLVGGLIGIGGFNISRIRNESGATIKVCGGRGEQNYRQLQFGGSAEQVALAKQ 349
            E L+   L+G +IG  G  IS IR  SGA IK+         R +   GS   +ALA+ 
Sbjct: 261 QEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQY 320

[Close]

BLAST of Csor.00g008640 vs. ExPASy Swiss-Prot
Match: P57724 (Poly(rC)-binding protein 4 OS=Mus musculus OX=10090 GN=Pcbp4 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-12
Identity = 78/300 (26.00%), Postives = 135/300 (45.00%), Query Frame = 0


Query: 68  RIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENTVTDAE 127
           R+++  K++G +IGK G  ++++RE++ A I I++            S  ++  T+T + 
Sbjct: 21  RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----------SCPERITTITGST 80

Query: 128 IALQQIAALILKEDGTSIEELKVGTGHVAAN--TIRLLIAGSQAGSLIGASGQNIEKLRN 187
            A+    ++I  +    +       G V+    T+RL+I  SQ GSLIG +G  I+++R 
Sbjct: 81  AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 140

Query: 188 SSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPR-QVISVS 247
           ++GA V + A + LP     + ++R V +SG   A++  + +I   +  +PP+   I   
Sbjct: 141 TTGAQVQV-AGDLLP-----NSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYH 200

Query: 248 PTYN-----------------YNAIHPPQ--------------------SYMDPTSVNYV 307
           P+ +                 Y A+ P +                      MDP S    
Sbjct: 201 PSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGMDP-STQTS 260

Query: 308 TFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGGRGEQNYRQLQFGGSAEQVALAK 328
           + E L+   L+G +IG  G  IS IR  SGA IK+         R +   GS   +ALA+
Sbjct: 261 SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQ 302

[Close]

BLAST of Csor.00g008640 vs. ExPASy Swiss-Prot
Match: P57721 (Poly(rC)-binding protein 3 OS=Homo sapiens OX=9606 GN=PCBP3 PE=1 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 3.0e-12
Identity = 82/332 (24.70%), Postives = 141/332 (42.47%), Query Frame = 0


Query: 68  RIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENTVTDAE 127
           R+++  K++G +IGK G  ++K+REE+ A I I++      ER++ I+        TDA 
Sbjct: 49  RLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGP------TDAI 108

Query: 128 IALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSS 187
                + A   +ED  +       T      T+RL++  SQ GSLIG  G  I+++R S+
Sbjct: 109 FKAFAMIAYKFEEDIINSMSNSPATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIREST 168

Query: 188 GASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPR--------- 247
           GA V + A + LP     + ++R V ISG   A+++ +++I   +  +PP+         
Sbjct: 169 GAQVQV-AGDMLP-----NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPK 228

Query: 248 -----------QVISVSPTY------NYNAIH---------PPQSYMDP----------- 307
                      Q  ++   Y          +H         PP    +P           
Sbjct: 229 PASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHS 288

Query: 308 ---------------TSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVCGGR 339
                           S    T E+ I   L+G +IG  G  I+ IR  SGA IK+    
Sbjct: 289 SEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAT 348

[Close]

BLAST of Csor.00g008640 vs. NCBI nr
Match: KAG6592929.1 (RNA-binding KH domain-containing protein PEPPER, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 673 bits (1737), Expect = 1.35e-243
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0


Query: 1   MQSGDIPVYPSMPAKAPLPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQA 60
           MQSGDIPVYPSMPAKAPLPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQA
Sbjct: 1   MQSGDIPVYPSMPAKAPLPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQA 60

Query: 61  KAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE 120
           KAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE
Sbjct: 61  KAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE 120

Query: 121 NTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNI 180
           NTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNI
Sbjct: 121 NTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNI 180

Query: 181 EKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPRQV 240
           EKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPRQV
Sbjct: 181 EKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPRQV 240

Query: 241 ISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATI 300
           ISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATI
Sbjct: 241 ISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATI 300

Query: 301 KVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352
           KVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW
Sbjct: 301 KVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352

[Close]

BLAST of Csor.00g008640 vs. NCBI nr
Match: XP_022960112.1 (flowering locus K homology domain-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 664 bits (1714), Expect = 4.31e-240
Identity = 349/352 (99.15%), Postives = 349/352 (99.15%), Query Frame = 0


Query: 1   MQSGDIPVYPSMPAKAPLPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQA 60
           MQSGDIPVYPSMPAKAPLPLPGTVLVSK GHAVTGKRRREDDPIV YSEAVDVSAPKRQA
Sbjct: 1   MQSGDIPVYPSMPAKAPLPLPGTVLVSKSGHAVTGKRRREDDPIVSYSEAVDVSAPKRQA 60

Query: 61  KAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE 120
           KAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE
Sbjct: 61  KAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE 120

Query: 121 NTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNI 180
           NTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNI
Sbjct: 121 NTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNI 180

Query: 181 EKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPRQV 240
           EKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDV AVLKALEEIGNQLRVNPPRQV
Sbjct: 181 EKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNPPRQV 240

Query: 241 ISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATI 300
           ISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATI
Sbjct: 241 ISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATI 300

Query: 301 KVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352
           KVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW
Sbjct: 301 KVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352

[Close]

BLAST of Csor.00g008640 vs. NCBI nr
Match: XP_022960113.1 (flowering locus K homology domain-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 660 bits (1704), Expect = 1.39e-238
Identity = 347/350 (99.14%), Postives = 347/350 (99.14%), Query Frame = 0


Query: 3   SGDIPVYPSMPAKAPLPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQAKA 62
           SGDIPVYPSMPAKAPLPLPGTVLVSK GHAVTGKRRREDDPIV YSEAVDVSAPKRQAKA
Sbjct: 2   SGDIPVYPSMPAKAPLPLPGTVLVSKSGHAVTGKRRREDDPIVSYSEAVDVSAPKRQAKA 61

Query: 63  HDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENT 122
           HDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENT
Sbjct: 62  HDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENT 121

Query: 123 VTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEK 182
           VTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEK
Sbjct: 122 VTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEK 181

Query: 183 LRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPRQVIS 242
           LRNSSGASVTILAPNQLPLCASAHESDRVVQISGDV AVLKALEEIGNQLRVNPPRQVIS
Sbjct: 182 LRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNPPRQVIS 241

Query: 243 VSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKV 302
           VSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKV
Sbjct: 242 VSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKV 301

Query: 303 CGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352
           CGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW
Sbjct: 302 CGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 351

[Close]

BLAST of Csor.00g008640 vs. NCBI nr
Match: XP_023514318.1 (poly(rC)-binding protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 660 bits (1703), Expect = 2.38e-238
Identity = 348/356 (97.75%), Postives = 349/356 (98.03%), Query Frame = 0


Query: 1   MQSGDIPVYPSMPAKAPLP----LPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAP 60
           MQSGDIPVYPSMPAKAPLP    LPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAP
Sbjct: 1   MQSGDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIV PSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVAPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDKENTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KDKENTVTDAE ALQQIAALILKEDGTSIEELKVGTGHVAANT+RLLIAGSQAGSLIGAS
Sbjct: 121 KDKENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTVRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDV AVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352
           GATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW
Sbjct: 301 GATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 356

[Close]

BLAST of Csor.00g008640 vs. NCBI nr
Match: XP_023005036.1 (poly(rC)-binding protein 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 659 bits (1701), Expect = 4.80e-238
Identity = 348/356 (97.75%), Postives = 349/356 (98.03%), Query Frame = 0


Query: 1   MQSGDIPVYPSMPAKAPLP----LPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAP 60
           MQSGDIPVYPSMPAKAPLP    LPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDV AP
Sbjct: 1   MQSGDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVLAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDKENTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KDKENTVTDAE ALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDKENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDV AVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYNA+HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNAVHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352
           GATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW
Sbjct: 301 GATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 356

[Close]

BLAST of Csor.00g008640 vs. ExPASy TrEMBL
Match: A0A6J1H6G7 (flowering locus K homology domain-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460958 PE=4 SV=1)

HSP 1 Score: 664 bits (1714), Expect = 2.09e-240
Identity = 349/352 (99.15%), Postives = 349/352 (99.15%), Query Frame = 0


Query: 1   MQSGDIPVYPSMPAKAPLPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQA 60
           MQSGDIPVYPSMPAKAPLPLPGTVLVSK GHAVTGKRRREDDPIV YSEAVDVSAPKRQA
Sbjct: 1   MQSGDIPVYPSMPAKAPLPLPGTVLVSKSGHAVTGKRRREDDPIVSYSEAVDVSAPKRQA 60

Query: 61  KAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE 120
           KAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE
Sbjct: 61  KAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE 120

Query: 121 NTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNI 180
           NTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNI
Sbjct: 121 NTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNI 180

Query: 181 EKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPRQV 240
           EKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDV AVLKALEEIGNQLRVNPPRQV
Sbjct: 181 EKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNPPRQV 240

Query: 241 ISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATI 300
           ISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATI
Sbjct: 241 ISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATI 300

Query: 301 KVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352
           KVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW
Sbjct: 301 KVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352

[Close]

BLAST of Csor.00g008640 vs. ExPASy TrEMBL
Match: A0A6J1H7W9 (flowering locus K homology domain-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460958 PE=4 SV=1)

HSP 1 Score: 660 bits (1704), Expect = 6.73e-239
Identity = 347/350 (99.14%), Postives = 347/350 (99.14%), Query Frame = 0


Query: 3   SGDIPVYPSMPAKAPLPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKRQAKA 62
           SGDIPVYPSMPAKAPLPLPGTVLVSK GHAVTGKRRREDDPIV YSEAVDVSAPKRQAKA
Sbjct: 2   SGDIPVYPSMPAKAPLPLPGTVLVSKSGHAVTGKRRREDDPIVSYSEAVDVSAPKRQAKA 61

Query: 63  HDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENT 122
           HDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENT
Sbjct: 62  HDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKENT 121

Query: 123 VTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEK 182
           VTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEK
Sbjct: 122 VTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEK 181

Query: 183 LRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPRQVIS 242
           LRNSSGASVTILAPNQLPLCASAHESDRVVQISGDV AVLKALEEIGNQLRVNPPRQVIS
Sbjct: 182 LRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNPPRQVIS 241

Query: 243 VSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKV 302
           VSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKV
Sbjct: 242 VSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKV 301

Query: 303 CGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352
           CGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW
Sbjct: 302 CGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 351

[Close]

BLAST of Csor.00g008640 vs. ExPASy TrEMBL
Match: A0A6J1KTT5 (poly(RC)-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498149 PE=4 SV=1)

HSP 1 Score: 659 bits (1701), Expect = 2.32e-238
Identity = 348/356 (97.75%), Postives = 349/356 (98.03%), Query Frame = 0


Query: 1   MQSGDIPVYPSMPAKAPLP----LPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAP 60
           MQSGDIPVYPSMPAKAPLP    LPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDV AP
Sbjct: 1   MQSGDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVLAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDKENTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KDKENTVTDAE ALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDKENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDV AVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYNA+HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNAVHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352
           GATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW
Sbjct: 301 GATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 356

[Close]

BLAST of Csor.00g008640 vs. ExPASy TrEMBL
Match: A0A6J1KS32 (poly(RC)-binding protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498149 PE=4 SV=1)

HSP 1 Score: 655 bits (1691), Expect = 7.48e-237
Identity = 346/354 (97.74%), Postives = 347/354 (98.02%), Query Frame = 0


Query: 3   SGDIPVYPSMPAKAPLP----LPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAPKR 62
           SGDIPVYPSMPAKAPLP    LPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDV APKR
Sbjct: 2   SGDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVLAPKR 61

Query: 63  QAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 122
           QAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD
Sbjct: 62  QAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 121

Query: 123 KENTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQ 182
           KENTVTDAE ALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQ
Sbjct: 122 KENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQ 181

Query: 183 NIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNPPR 242
           NIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDV AVLKALEEIGNQLRVNPPR
Sbjct: 182 NIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNPPR 241

Query: 243 QVISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGA 302
           QVISVSPTYNYNA+HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGA
Sbjct: 242 QVISVSPTYNYNAVHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGA 301

Query: 303 TIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352
           TIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW
Sbjct: 302 TIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 355

[Close]

BLAST of Csor.00g008640 vs. ExPASy TrEMBL
Match: A0A1S3CB11 (RNA-binding KH domain-containing protein PEPPER-like OS=Cucumis melo OX=3656 GN=LOC103498803 PE=4 SV=1)

HSP 1 Score: 626 bits (1615), Expect = 2.96e-225
Identity = 329/356 (92.42%), Postives = 341/356 (95.79%), Query Frame = 0


Query: 1   MQSGDIPVYPSMPAKAPLP----LPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVSAP 60
           MQ GDIP+YPSMPA APLP    LPGT+LVS+PGH VTGKRRREDD IV  S+A DVSAP
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDKENTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KD EN+VTDAE ALQQIAALILKEDG+SIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDNENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGAS+TILAPNQLPLCASAHESDRVVQISGD+LAVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNAIHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYN +HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQLMRQAGVQPTALQMW 352
           GATIKVCGGRGEQNYRQ+QFGGSAEQVALAKQRVDEYIYSQ++RQAGVQ TALQMW
Sbjct: 301 GATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQVIRQAGVQQTALQMW 356

[Close]

BLAST of Csor.00g008640 vs. TAIR 10
Match: AT5G15270.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 109.8 bits (273), Expect = 4.6e-24
Identity = 91/289 (31.49%), Postives = 145/289 (50.17%), Query Frame = 0


Query: 64  DVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSK------ 123
           D +FR + P K+IG VIG+ G  ++++R +T++ I+I +A+   +ERVI I S       
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108

Query: 124 --DKENTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGA 183
             D E  ++ A+ AL +I   ++ +D  S E+   G   V   T +LL+   Q G ++G 
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVADDARS-EDSPEGEKQV---TAKLLVPSDQIGCILGR 168

Query: 184 SGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVN 243
            GQ ++ +R+ +GA + I+    +PLCA    SD ++QISG+VL V KAL +I ++L  N
Sbjct: 169 GGQIVQNIRSETGAQIRIVKDRNMPLCAL--NSDELIQISGEVLIVKKALLQIASRLHEN 228

Query: 244 PPRQVISVSPTYNYNA---------------------------------IHPPQSYMDPT 303
           P R    +S +  Y A                                   PP++  DP 
Sbjct: 229 PSRSQNLLSSSGGYPAGSLMSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRN--DPP 288

Query: 304 SVNYVTFEMLISET-LVGGLIGIGGFNISRIRNESGATIKVCGGRGEQN 311
           +  +  F  L+S    +  +IG GG  I+++R E+ ATIKV   R E N
Sbjct: 289 ATEF--FIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGN 327

[Close]

BLAST of Csor.00g008640 vs. TAIR 10
Match: AT5G15270.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 109.8 bits (273), Expect = 4.6e-24
Identity = 91/289 (31.49%), Postives = 145/289 (50.17%), Query Frame = 0


Query: 64  DVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSK------ 123
           D +FR + P K+IG VIG+ G  ++++R +T++ I+I +A+   +ERVI I S       
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108

Query: 124 --DKENTVTDAEIALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGA 183
             D E  ++ A+ AL +I   ++ +D  S E+   G   V   T +LL+   Q G ++G 
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVADDARS-EDSPEGEKQV---TAKLLVPSDQIGCILGR 168

Query: 184 SGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGNQLRVN 243
            GQ ++ +R+ +GA + I+    +PLCA    SD ++QISG+VL V KAL +I ++L  N
Sbjct: 169 GGQIVQNIRSETGAQIRIVKDRNMPLCAL--NSDELIQISGEVLIVKKALLQIASRLHEN 228

Query: 244 PPRQVISVSPTYNYNA---------------------------------IHPPQSYMDPT 303
           P R    +S +  Y A                                   PP++  DP 
Sbjct: 229 PSRSQNLLSSSGGYPAGSLMSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRN--DPP 288

Query: 304 SVNYVTFEMLISET-LVGGLIGIGGFNISRIRNESGATIKVCGGRGEQN 311
           +  +  F  L+S    +  +IG GG  I+++R E+ ATIKV   R E N
Sbjct: 289 ATEF--FIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGN 327

[Close]

BLAST of Csor.00g008640 vs. TAIR 10
Match: AT1G14170.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-21
Identity = 81/269 (30.11%), Postives = 137/269 (50.93%), Query Frame = 0


Query: 63  HDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE-- 122
           HD ++R + P K+ G +IGK G   +++R ETK+ ++I +A+   EERV+ + S ++E  
Sbjct: 9   HDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 68

Query: 123 NTVTDAEIALQQIAALIL----------KEDGTSIEELKVGTGHVAANTIRLLIAGSQAG 182
           +   D E+    + AL            ++DGT  +      G     T+R+L+   Q G
Sbjct: 69  HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDN---DLGEKQTVTVRMLVPSDQIG 128

Query: 183 SLIGASGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIGN 242
            +IG  GQ I+ LRN + A + ++  + LP CA     D ++ I G+ L V +AL ++ +
Sbjct: 129 CVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVAS 188

Query: 243 QLRVNPPR-QVISVSPTYNYNAIHPPQSYMDPTSV-----NYVTFE-----------MLI 302
            L  NP R Q + +S   + +++H P + +   ++     NY                + 
Sbjct: 189 LLHDNPSRFQHLLLSS--SSSSMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFIC 248

[Close]

BLAST of Csor.00g008640 vs. TAIR 10
Match: AT1G14170.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-20
Identity = 80/270 (29.63%), Postives = 137/270 (50.74%), Query Frame = 0


Query: 62  AHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE- 121
           + D ++R + P K+ G +IGK G   +++R ETK+ ++I +A+   EERV+ + S ++E 
Sbjct: 16  SEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEEL 75

Query: 122 -NTVTDAEIALQQIAALIL----------KEDGTSIEELKVGTGHVAANTIRLLIAGSQA 181
            +   D E+    + AL            ++DGT  +      G     T+R+L+   Q 
Sbjct: 76  NHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDN---DLGEKQTVTVRMLVPSDQI 135

Query: 182 GSLIGASGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIG 241
           G +IG  GQ I+ LRN + A + ++  + LP CA     D ++ I G+ L V +AL ++ 
Sbjct: 136 GCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVA 195

Query: 242 NQLRVNPPR-QVISVSPTYNYNAIHPPQSYMDPTSV-----NYVTFE-----------ML 301
           + L  NP R Q + +S   + +++H P + +   ++     NY                +
Sbjct: 196 SLLHDNPSRFQHLLLSS--SSSSMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFI 255

Query: 302 ISETLVGGLIGIGGFNISRIRNESGATIKV 303
                VGG+IG GG  I++IR E+GATI+V
Sbjct: 256 CPAENVGGVIGKGGGFINQIRQETGATIRV 279

[Close]

BLAST of Csor.00g008640 vs. TAIR 10
Match: AT1G14170.3 (RNA-binding KH domain-containing protein )

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-20
Identity = 80/270 (29.63%), Postives = 137/270 (50.74%), Query Frame = 0


Query: 62  AHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDKE- 121
           + D ++R + P K+ G +IGK G   +++R ETK+ ++I +A+   EERV+ + S ++E 
Sbjct: 41  SEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEEL 100

Query: 122 -NTVTDAEIALQQIAALIL----------KEDGTSIEELKVGTGHVAANTIRLLIAGSQA 181
            +   D E+    + AL            ++DGT  +      G     T+R+L+   Q 
Sbjct: 101 NHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDN---DLGEKQTVTVRMLVPSDQI 160

Query: 182 GSLIGASGQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVLAVLKALEEIG 241
           G +IG  GQ I+ LRN + A + ++  + LP CA     D ++ I G+ L V +AL ++ 
Sbjct: 161 GCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVA 220

Query: 242 NQLRVNPPR-QVISVSPTYNYNAIHPPQSYMDPTSV-----NYVTFE-----------ML 301
           + L  NP R Q + +S   + +++H P + +   ++     NY                +
Sbjct: 221 SLLHDNPSRFQHLLLSS--SSSSMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFI 280

Query: 302 ISETLVGGLIGIGGFNISRIRNESGATIKV 303
                VGG+IG GG  I++IR E+GATI+V
Sbjct: 281 CPAENVGGVIGKGGGFINQIRQETGATIRV 304

The following BLAST results are available for this feature:

BLAST of Csor.00g008640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZH4	5.3e-17	33.33	RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SR13	2.9e-15	31.40	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]
P57723	1.8e-12	24.69	Poly(rC)-binding protein 4 OS=Homo sapiens OX=9606 GN=PCBP4 PE=2 SV=1	[more]
P57724	2.3e-12	26.00	Poly(rC)-binding protein 4 OS=Mus musculus OX=10090 GN=Pcbp4 PE=1 SV=1	[more]
P57721	3.0e-12	24.70	Poly(rC)-binding protein 3 OS=Homo sapiens OX=9606 GN=PCBP3 PE=1 SV=2	[more]

BLAST of Csor.00g008640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592929.1	1.35e-243	100.00	RNA-binding KH domain-containing protein PEPPER, partial [Cucurbita argyrosperma...	[more]
XP_022960112.1	4.31e-240	99.15	flowering locus K homology domain-like isoform X1 [Cucurbita moschata]	[more]
XP_022960113.1	1.39e-238	99.14	flowering locus K homology domain-like isoform X2 [Cucurbita moschata]	[more]
XP_023514318.1	2.38e-238	97.75	poly(rC)-binding protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_023005036.1	4.80e-238	97.75	poly(rC)-binding protein 4-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Csor.00g008640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6G7	2.09e-240	99.15	flowering locus K homology domain-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1H7W9	6.73e-239	99.14	flowering locus K homology domain-like isoform X2 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KTT5	2.32e-238	97.75	poly(RC)-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1KS32	7.48e-237	97.74	poly(RC)-binding protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A1S3CB11	2.96e-225	92.42	RNA-binding KH domain-containing protein PEPPER-like OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of Csor.00g008640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15270.2	4.6e-24	31.49	RNA-binding KH domain-containing protein	[more]
AT5G15270.1	4.6e-24	31.49	RNA-binding KH domain-containing protein	[more]
AT1G14170.2	3.7e-21	30.11	RNA-binding KH domain-containing protein	[more]
AT1G14170.1	2.4e-20	29.63	RNA-binding KH domain-containing protein	[more]
AT1G14170.3	2.4e-20	29.63	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 63..138 e-value: 4.6E-8 score: 42.8 coord: 156..233 e-value: 5.4E-11 score: 52.5 coord: 265..335 e-value: 9.9E-6 score: 35.0
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 259..338 e-value: 7.3E-14 score: 53.2
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 156..236 e-value: 1.0E-15 score: 59.2
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 63..141 e-value: 3.4E-13 score: 51.1
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 62..135
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 152..233
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 260..341
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 68..126 e-value: 4.3E-10 score: 39.2 coord: 268..331 e-value: 6.0E-10 score: 38.8 coord: 159..228 e-value: 2.0E-11 score: 43.5
None	No IPR available	PANTHER	PTHR10288:SF265	POLY(RC)-BINDING PROTEIN 4-LIKE	coord: 30..345
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 30..345
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 266..330 score: 12.747295
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 157..228 score: 14.508204
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 64..130 score: 14.403388
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 67..117 e-value: 2.48173E-12 score: 59.4123
None	No IPR available	CDD	cd00105	KH-I	coord: 288..330 e-value: 0.0015582 score: 34.458
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 159..228 e-value: 6.6082E-17 score: 72.1239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g008640.m01	Csor.00g008640.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding