Csor.00g007370 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g007370
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	LOB domain-containing protein
Location	Csor_Chr08: 1620025 .. 1620886 (+)
RNA-Seq Expression	Csor.00g007370
Synteny	Csor.00g007370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCTCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTTGCTCTCCAACATCAGGTCGGTTTTCTCTCTCGTGTTATATGTTATGTAATTTACTGTGATGTCCCATGTTGGTTGAGGAGGAGAACAAATCACCATTTATAAGGGTGTGGAAACCTTCCCCTATCAGACGTGTTTTAAAGCCCTGAAGAGAAGCCCAAAGAGAACAATATCTGCTAGCGGTGGATCTGGGGCTCGGGCGTTACATTTACTTAACGTATACTCGAACGATAATTTATATAATCGAGCTTAGTACTCGTCGGTTTAGCGTTTTTCGTGTTTTTCGTGATCGGTTATTCGAAACCCTAATTTTTGGAGATGTTAATAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCCGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA

mRNA sequence

ATGGCGGCCTCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTTGCTCTCCAACATCAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCCGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA

Coding sequence (CDS)

ATGGCGGCCTCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTTGCTCTCCAACATCAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCCGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA

Protein sequence

MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFCC

Homology

[Close]

BLAST of Csor.00g007370 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-45
Identity = 92/135 (68.15%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL 60
           M +SSSSS  PCGACKFLRRKC  GC+FAPYF H+ GASHF+A+HKVFGASNASKLL+HL
Sbjct: 1   MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHL 60

Query: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ--IILN 120
           P+S R  AA+TISYEAQARLQDPIYGC+S IFALQ QVVNL+A++  L++QAAQ  I  +
Sbjct: 61  PISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFAD 120

Query: 121 GYITRNPNELLYGNS 134
              + NPN   YG++
Sbjct: 121 SPTSENPNS-YYGDT 134

[Close]

BLAST of Csor.00g007370 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.6e-39
Identity = 77/104 (74.04%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 11  PCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAV 70
           PCGACKFLRRKCV GC+FAPYF H+ GA+HF+A+HKVFGASN SKLLAHLP++ R  AAV
Sbjct: 7   PCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAV 66

Query: 71  TISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ 115
           TISYEAQARL+DPIYGC++ IFALQ QV+ L+AQ+A L+  AAQ
Sbjct: 67  TISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQ 110

[Close]

BLAST of Csor.00g007370 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.8e-39
Identity = 78/123 (63.41%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 6   SSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRR+CV GC+FAPYF H+ GASHF+A+H+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 66  SLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ--IILNGYITR 125
             AA TI YEAQAR QDPIYGC+S IF+LQ QVVNL+ Q+  L++QA Q  + ++     
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPSIE 121

Query: 126 NPN 127
           NPN
Sbjct: 122 NPN 124

[Close]

BLAST of Csor.00g007370 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-36
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 3   ASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 62
           +S      PCGACKFLRRKCV GCIFAPYF  + G+++F+AVHKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 63  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIIL 118
             RS A VTI YEAQAR++DPIYGC++ IFALQ QVVNL+A+V+YL+   A + L
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLEL 143

[Close]

BLAST of Csor.00g007370 vs. ExPASy Swiss-Prot
Match: Q9SJW5 (LOB domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=LBD14 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.6e-35
Identity = 70/104 (67.31%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 11  PCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAV 70
           PCG CKFLRRKCV GC+FAPYF ++ G+S+F+A+HKVFGASN SKL++HLP   R  A  
Sbjct: 7   PCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVR 66

Query: 71  TISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ 115
           TISYEA +RL DPIYGC+SQIF+LQ QVV+L+AQV  LRE+A++
Sbjct: 67  TISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of Csor.00g007370 vs. NCBI nr
Match: KAG6593055.1 (LOB domain-containing protein 29, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 371 bits (952), Expect = 1.37e-129
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL 60
           MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL 60

Query: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGY 120
           PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGY
Sbjct: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGY 120

Query: 121 ITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGD 180
           ITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGD
Sbjct: 121 ITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGD 180

Query: 181 FCC 183
           FCC
Sbjct: 181 FCC 183

[Close]

BLAST of Csor.00g007370 vs. NCBI nr
Match: XP_023515354.1 (LOB domain-containing protein 29-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 368 bits (945), Expect = 1.60e-128
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL 60
           MAASSSSSSPPCGACKFLRRKCVNGCIFAPYF HDLGASHFSAVHKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFPHDLGASHFSAVHKVFGASNASKLLAHL 60

Query: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGY 120
           PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGY
Sbjct: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGY 120

Query: 121 ITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGD 180
           ITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGD
Sbjct: 121 ITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGD 180

Query: 181 FCC 183
           FCC
Sbjct: 181 FCC 183

[Close]

BLAST of Csor.00g007370 vs. NCBI nr
Match: XP_022959894.1 (LOB domain-containing protein 29-like [Cucurbita moschata] >KAG7025463.1 LOB domain-containing protein 29, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367 bits (941), Expect = 6.29e-128
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 3   ASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 62
           A+SSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV
Sbjct: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61

Query: 63  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 122
           SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT
Sbjct: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 121

Query: 123 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 182
           RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC
Sbjct: 122 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 181

[Close]

BLAST of Csor.00g007370 vs. NCBI nr
Match: XP_023004822.1 (LOB domain-containing protein 29-like [Cucurbita maxima])

HSP 1 Score: 357 bits (917), Expect = 3.20e-124
Identity = 173/180 (96.11%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 4   SSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVS 63
           SSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVS
Sbjct: 6   SSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVS 65

Query: 64  HRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYITR 123
           HRS AAVTISYEAQARLQDPIYGCISQIFALQHQV+NLRAQVAYLREQAAQI+LNGYITR
Sbjct: 66  HRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLNGYITR 125

Query: 124 NPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFCC 183
           NPNELLYGNSLSYSDE+LLDLQTWLLEESCSTAAPEFEPTA PYV+MG+ADSNLAGDFCC
Sbjct: 126 NPNELLYGNSLSYSDEQLLDLQTWLLEESCSTAAPEFEPTAAPYVEMGIADSNLAGDFCC 185

[Close]

BLAST of Csor.00g007370 vs. NCBI nr
Match: XP_038896394.1 (LOB domain-containing protein 29-like [Benincasa hispida])

HSP 1 Score: 311 bits (796), Expect = 8.33e-106
Identity = 154/182 (84.62%), Postives = 163/182 (89.56%), Query Frame = 0


Query: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL 60
           MAASSSSSSPPCGACKFLRRKCVNGCIFAP+FRH+LGASHFSA+HKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPHFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGY 120
           PVSHR  AAVTISYEAQARLQDPIYGC+S IFALQ QV+NLRAQVAYLREQAAQI+LN Y
Sbjct: 61  PVSHRCDAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 ITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGD 180
            TRNP EL Y  S  YSD+ LLDLQTWLL ESCS AAPEFEP A PYV+M V DSNLAG+
Sbjct: 121 TTRNPIELPYEKSPFYSDDPLLDLQTWLLAESCSAAAPEFEPAAVPYVEMSVVDSNLAGN 180

Query: 181 FC 182
           FC
Sbjct: 181 FC 182

[Close]

BLAST of Csor.00g007370 vs. ExPASy TrEMBL
Match: A0A6J1H9E4 (LOB domain-containing protein 29-like OS=Cucurbita moschata OX=3662 GN=LOC111460814 PE=3 SV=1)

HSP 1 Score: 367 bits (941), Expect = 3.05e-128
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 3   ASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 62
           A+SSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV
Sbjct: 2   AASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 61

Query: 63  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 122
           SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT
Sbjct: 62  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYIT 121

Query: 123 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 182
           RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC
Sbjct: 122 RNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFC 181

[Close]

BLAST of Csor.00g007370 vs. ExPASy TrEMBL
Match: A0A6J1KRG7 (LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC111498009 PE=3 SV=1)

HSP 1 Score: 357 bits (917), Expect = 1.55e-124
Identity = 173/180 (96.11%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 4   SSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVS 63
           SSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVS
Sbjct: 6   SSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVS 65

Query: 64  HRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYITR 123
           HRS AAVTISYEAQARLQDPIYGCISQIFALQHQV+NLRAQVAYLREQAAQI+LNGYITR
Sbjct: 66  HRSQAAVTISYEAQARLQDPIYGCISQIFALQHQVMNLRAQVAYLREQAAQILLNGYITR 125

Query: 124 NPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFCC 183
           NPNELLYGNSLSYSDE+LLDLQTWLLEESCSTAAPEFEPTA PYV+MG+ADSNLAGDFCC
Sbjct: 126 NPNELLYGNSLSYSDEQLLDLQTWLLEESCSTAAPEFEPTAAPYVEMGIADSNLAGDFCC 185

[Close]

BLAST of Csor.00g007370 vs. ExPASy TrEMBL
Match: A0A0A0K5D4 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV=1)

HSP 1 Score: 304 bits (779), Expect = 1.63e-103
Identity = 150/184 (81.52%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL 60
           MAASSSSS+PPCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGY 120
           PVSHR  AAVTISYEAQARLQDPIYGC+S I ALQ QV+NLRAQVAYLREQAAQI+LN Y
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNY 120

Query: 121 ITRNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAG 180
            TRNP ELLY  S   YSD+  LDLQ+WLL ESCS  APE EP A PY +M V DS LAG
Sbjct: 121 TTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAG 180

Query: 181 DFCC 183
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of Csor.00g007370 vs. ExPASy TrEMBL
Match: A0A5D3D179 (LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003110 PE=3 SV=1)

HSP 1 Score: 298 bits (762), Expect = 6.33e-101
Identity = 149/184 (80.98%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL 60
           MAASSSSSS PCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGY 120
           PVSHR  AAVTISYEAQARLQDPIYGC+S I ALQ QV+NLRAQVA LREQAAQI+LN Y
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 ITRNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAG 180
            TRNP EL Y  S L YSD+  LDLQ+WLL ESC+ AAPEFEP A PY +M V +S LAG
Sbjct: 121 TTRNPTELPYEKSPLYYSDDPFLDLQSWLLAESCTVAAPEFEPAAIPYFEMSVVNSKLAG 180

Query: 181 DFCC 183
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of Csor.00g007370 vs. ExPASy TrEMBL
Match: A0A1S3BGZ5 (LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV=1)

HSP 1 Score: 295 bits (755), Expect = 7.38e-100
Identity = 148/184 (80.43%), Postives = 157/184 (85.33%), Query Frame = 0


Query: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL 60
           MAASSSSSS PCGACKFLRRKCVNGCIFAPYFRH+LGASHFSA+HKVFGASNASKLLAHL
Sbjct: 1   MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHL 60

Query: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGY 120
           PVSHR  AAVTISYEAQARLQDPIYGC+S I ALQ QV+NLRAQVA LREQAAQI+LN Y
Sbjct: 61  PVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNY 120

Query: 121 ITRNPNELLYGNS-LSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAG 180
            TRN  EL Y  S   YSD+  LDLQ+WLL ESC+ AAPEFEP A PY +M V DS LAG
Sbjct: 121 TTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAG 180

Query: 181 DFCC 183
           DFCC
Sbjct: 181 DFCC 184

[Close]

BLAST of Csor.00g007370 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-46
Identity = 92/135 (68.15%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL 60
           M +SSSSS  PCGACKFLRRKC  GC+FAPYF H+ GASHF+A+HKVFGASNASKLL+HL
Sbjct: 1   MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHL 60

Query: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ--IILN 120
           P+S R  AA+TISYEAQARLQDPIYGC+S IFALQ QVVNL+A++  L++QAAQ  I  +
Sbjct: 61  PISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFAD 120

Query: 121 GYITRNPNELLYGNS 134
              + NPN   YG++
Sbjct: 121 SPTSENPNS-YYGDT 134

[Close]

BLAST of Csor.00g007370 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 161.4 bits (407), Expect = 6.9e-40
Identity = 78/123 (63.41%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 6   SSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHR 65
           + S  PCGACKFLRR+CV GC+FAPYF H+ GASHF+A+H+VFGASNASKLL+HLP+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 66  SLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ--IILNGYITR 125
             AA TI YEAQAR QDPIYGC+S IF+LQ QVVNL+ Q+  L++QA Q  + ++     
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPSIE 121

Query: 126 NPN 127
           NPN
Sbjct: 122 NPN 124

[Close]

BLAST of Csor.00g007370 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 154.5 bits (389), Expect = 8.5e-38
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 3   ASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPV 62
           +S      PCGACKFLRRKCV GCIFAPYF  + G+++F+AVHKVFGASN SKLL H+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 63  SHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIIL 118
             RS A VTI YEAQAR++DPIYGC++ IFALQ QVVNL+A+V+YL+   A + L
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLEL 143

[Close]

BLAST of Csor.00g007370 vs. TAIR 10
Match: AT2G31310.1 (LOB domain-containing protein 14 )

HSP 1 Score: 148.7 bits (374), Expect = 4.7e-36
Identity = 70/104 (67.31%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 11  PCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAV 70
           PCG CKFLRRKCV GC+FAPYF ++ G+S+F+A+HKVFGASN SKL++HLP   R  A  
Sbjct: 7   PCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVR 66

Query: 71  TISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQ 115
           TISYEA +RL DPIYGC+SQIF+LQ QVV+L+AQV  LRE+A++
Sbjct: 67  TISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110

[Close]

BLAST of Csor.00g007370 vs. TAIR 10
Match: AT4G00210.1 (LOB domain-containing protein 31 )

HSP 1 Score: 148.3 bits (373), Expect = 6.1e-36
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MAASSSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHL 60
           M+ S++    PCGACKFLRRKCV  C+FAPYF    G SHF+AVHKVFGASNASKLL  +
Sbjct: 1   MSGSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMI 60

Query: 61  PVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQI 116
           P S R  A VT++YEA ARL+DP+YGC+  IFALQHQV+NL+A++AY++ Q + +
Sbjct: 61  PASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTL 115

The following BLAST results are available for this feature:

BLAST of Csor.00g007370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2J7	2.4e-45	68.15	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q5UG13	2.6e-39	74.04	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q9SLB6	9.8e-39	63.41	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]
O22131	1.2e-36	65.22	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q9SJW5	6.6e-35	67.31	LOB domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=LBD14 PE=1 S...	[more]

BLAST of Csor.00g007370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593055.1	1.37e-129	100.00	LOB domain-containing protein 29, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023515354.1	1.60e-128	99.45	LOB domain-containing protein 29-like [Cucurbita pepo subsp. pepo]	[more]
XP_022959894.1	6.29e-128	99.45	LOB domain-containing protein 29-like [Cucurbita moschata] >KAG7025463.1 LOB dom...	[more]
XP_023004822.1	3.20e-124	96.11	LOB domain-containing protein 29-like [Cucurbita maxima]	[more]
XP_038896394.1	8.33e-106	84.62	LOB domain-containing protein 29-like [Benincasa hispida]	[more]

BLAST of Csor.00g007370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H9E4	3.05e-128	99.45	LOB domain-containing protein 29-like OS=Cucurbita moschata OX=3662 GN=LOC111460...	[more]
A0A6J1KRG7	1.55e-124	96.11	LOB domain-containing protein 29-like OS=Cucurbita maxima OX=3661 GN=LOC11149800...	[more]
A0A0A0K5D4	1.63e-103	81.52	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G373460 PE=3 SV...	[more]
A0A5D3D179	6.33e-101	80.98	LOB domain-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BGZ5	7.38e-100	80.43	LOB domain-containing protein 29 OS=Cucumis melo OX=3656 GN=LOC103489736 PE=3 SV...	[more]

BLAST of Csor.00g007370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58190.1	1.7e-46	68.15	lateral organ boundaries-domain 29	[more]
AT2G42440.1	6.9e-40	63.41	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45420.1	8.5e-38	65.22	LOB domain-containing protein 18	[more]
AT2G31310.1	4.7e-36	67.31	LOB domain-containing protein 14	[more]
AT4G00210.1	6.1e-36	61.74	LOB domain-containing protein 31	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 11..108 e-value: 6.6E-34 score: 116.4
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 10..112 score: 21.704844
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 7..127
None	No IPR available	PANTHER	PTHR31529:SF26	LOB DOMAIN-CONTAINING PROTEIN 17-RELATED	coord: 7..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g007370.m01	Csor.00g007370.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus