Csor.00g007290 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g007290
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DNA-directed RNA polymerases II and IV subunit 5A-like
Location	Csor_Chr08: 1666327 .. 1670904 (-)
RNA-Seq Expression	Csor.00g007290
Synteny	Csor.00g007290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTAGCAGAGGAGGAAATCACCAGGCTTTTCAGAGTTCGAAAAACTGTGTTACAAATGCTTAAAGACCGAGGCTACTTCGTTGGAGACTTTGAGGTTGACATGTCCAGAGAGCAATTTAAGAATAAATATGGTGAAAGCATGAAACGAGAAGATATCGTGATCAACAAAGCGAAGAGAAATGATAGCTCTGATCAGGTATTGTCTCAGACAAGGGGCTGCAAGTTTCTCGTTAATTCTTCTATTTGTTTCCTTCCTCTTATAGTGTGACTCTTTTCTGTATAGATATACATTTTCTTTCCAGAAGAACCGAAGGTTGGCGTCAAGACAATGAAAACGTACACCAACCGCATGAAATCGGAGAATGTTTTTAGAGCAATATTGGTCGTTCAACAGAATTTGACCCCTTTCGCTCGCACCTGTATAAGTGAAATATCTACCAAATTCCACTTGGAAGTTTTCCAGGTGAAAACATTTCTTTAACATATTTTATGGAGTGTTTTTAGTTTTTTTATTTTTTTTATTTTTTAAGAATCGAGTCCTTTTGAGAAACATGAAAAAATACAAAGACACGAAAACAAAGTCCAAACAAAAGGAGTCCAAAACAAGTTACTTGTGAGATCCTACATCGGTTGGAGAGGGGAACGAAGCATTTCTTTCAAGGATGTGGAGACTCTCCCTAGCAGACACATTTTAAAACCCTTGAGGGGAAGCCCGAGAGGGAAAGACCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTAGTACAACTCCAATCTAAAAGAACAAGGTCAAGATCATAAGTACAAAATGGCTTAGTCACTTGGCCCCAAAGGGAGGCATTAAACGTAGCAACCTCGCACACTTCCTCACCCGATCTCTTGGCCTCTATAAAAGTTCCATTGTACCTTTCCGACCGAACACTTAACAAACAGCAAAGAAGTTAGCCCACATGACTTTGCCTCTTTCCCTAAAAAGGGAAAAGCTCCTCATCCAACGACGAACGATCATCCCTACCTCGAGCTCCAGAATCCCAAAAAGAGGATTTTAACCAATATCCCAATGAAACTAAGCAAACTGACAATCCCACAACAAATGATCAAGGTGCTCAAACGAAAAGGAGGAAGAATGCCAAGCCACCGGTCGGAGAAGTAAATTAGACGGGTCATTTACCAATAATTTGAGGAGAACCTACTCTGCAAACTAAAAATTATGTTATGCTCTCTTCCTTTATTCCTTGTTTTGCAATATGAGAATGAAAAATATGGGGTTTCTACATTCATGCTCCCACTGTCTTAGTTCACCTTTAGATATAACTTTTTTAACCCTTTCTTCATTTGTTGATGCAGGAAGCAGAATTACTAGTTAATATCAAAGATCACGTTCTTGTTCCTGAGCACCAGTTACTTTCCAACGAAGAGAAAAAGACACTACTGGAGCGATATACCGTGAAAGAAACACAGGTTAGCATTAATTCTTCAGAAAATGTTACGTTGTTAGAATGCATCTCAAATATTGATATTGAAATTTGATATGCTCATACGTTCCTGATACTGCTTTGGACTTCTACAACGTTATCTCAACTATTGATTAACTACTCGGTTTTCTTTGTATACTATGTTCAAATTTATCTGTCATGTCTCAAGCCCACCGCTAGTAGATATTGTCTTCTTTGGGCTTATCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACGTCTGCTAGGGAGAGGTTTCCACACCCTTGTAAAGAATGGTTCATTCTCCTCCCCAATCGACGTGGGATCTCACATTATCATTCCTATTTAGTGTAATTTTTTCTGAGTTTTGGATTTCATTAGATACATAGCATGCCGAGTCCTGCAAACTATGCGCTTATTTATTGATTTTGCCCAATAACCGAAGTATTCTGGTCTTACTCTGTGCATTTTGTTCATGTCGATTCCTCCTAAAAGGCAAGATTTTAAGTTATTAAGCTTTCTCAGCTCTAAAGTTGGAACCTAAAACCTCGTAGAGTATCAACGAACATGCTAAGCTCGTAGCATGGAGACATCCCTTGGGGGTATTAACACATTTTTGTTACAAAATGAATGAGAATCTTATATGGTGTTGCATATTTTGTGTTAGCTACCGCGCATACAGGTGACCGACCCAGTTGCGAGATACTACGGGCTAAAGCGTGGACAAGTTGTGAAGATCATCAGACCAAGTGAGACTGCAGGAAGATATGTAACTTACAGATATGTTGTCTGAGTATAATTATTATTTTGCAACCGAAGATGTAACATATAAATGCACATTGAACTCATCTTTTCATGTCTTCATCACTTTGGGAACTTCTGTATTTGGAATTTGAATAGGAATATTTATTTATTTTTATTAAAGGGTACTTTTGTAAATTGCCCCTATGGAATGGATTTTATTAAAGGTTACTTTTCTAAATTTTATTAAAGGGTACTTTCGTAAAATTATCCCTACATTCCCTGTGACATAATCACTTTACCTATTCTTTACTTTTAAGAATGAAGACTATCCTCGCGAATCAACAAGGTTCCTTTTCGTTGGTTTCCATAGCTGATGTCGTCATTCATTTATCGAGAATGTCCTTTTAGATAATTTTCCGTACTTAATAGTCATAACATGCATATAGTGACGACCCTATTCTTAAATAAAGAATTAGAGTTGTTATAGCCCATTTTTTTCTCATATATAGTGTTGATTTTTTAATAATATTAAACGTTATTTGTCGTTTTCATCTTTATTAGTTTAAAATTTTGGAGATCTAAATTGAAAAGACTACCAAGTGATTTATGAAGCAACTTATTTGACCATACGAAGCTCGACACAACTAGATAAAGAGAACCGATACATGGTCGTGACAAAAATTGTTGTTTTCATGTTTGGTTTATATTATTTAAAAGGCTTTTCAAACTTTTTCTCAATTACCAATTGGATAAAAAAATACTCTAAAAAAGTATTTAATTCATAAATACTTTACAAATTTGTTTTTATTTATATTTTTGTAAAGTAGTTAAAGAGCTTTTAACTTTTGTTTAAAGCACCATAAAATATTTTAAATATAATTTATTTAATGTGAAATTTGTTTTTTTTTTTATCTATTTTTTATTTTTGATAATTTCTTTTAATATACTTTGAAAGGGAAATTATTTTAATATCCAAGATTTAAAAAAATAGAAATGATTTTAAATTCTTGAACCCAATGGATTTTATTTTATATAAAAAAAAAATTATTTAGATCACTATATGCAGTTTAAAATACTTATATTTTATAAATATTAAATAACAAATCATAATCTAATTAAAAAAAAATTAAAATGAAGAAAATAAATAAATAAATAAAAATTGACATTTGAACAAAAGGAAAGGGGGAACCCTTGACCGAACGTATTAAAAGTCCACTGTACGGTCCATTTGTAGATGTGGCAAAGGGTTATTCGTAGTATTATTCAGTGCCCCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCCCCGATCTCAATTTCGTCTCTTCCCCTCTCTCTCTCCGCTGTTCCCGGCCGCCGGAGCTACTTCTTCACTCTCCTCACACCCCATTCTCCACCCCCTTTTCCCCTCAATTTCATCTCATTCTTCGATTCGATTCCCGCAACCTCTGTTTCTCGATCGCTTTCTCCATCTCTTACCGTTTTCTGGCGCCTCTTTGCTCTTCTTTTCCACCCTTCGCCGCCGAGGTTTGTTTTCGTTTTTCCGTTTCTGGAATGGATTCCTTTCGAGTTGTTTCTGGGTTTGGACACTGCCTTCCCCTTCCGGCCCCGGGGTTTTCAGTTCTGTGATTTTGATTGGTGTGTTTAGGGTTTCTTGCTTCCAGTTCTGTGGGTTTTGTTGCTCGAGCTGAATTGGGTGCTTTGAATTTTGTTTTGGTTTCTGGGCTTTTGGGTTCTCGTAGAATTTTGAGAGAAGGCGTTTTTTGAGGGATTGGAATTGGGGTTCTTCTGAAATTCTGTGTCCTGCTTGTTTCATTCTTGTGTTTGAGTTTAGATGGGTTTCTGGTTTTAGCATGCTCAATATAGGATTGGGCTAATTTCTGTTTTGTCTTCCCAGTTCAATTCTTTTTAAATTTTTAACCAGTGGTTCTCTTAGTTAATGGTTGTTAGATAGATTGTACGACTCAAGTTTTCTTGTGTATAGTATTGGTTATGTGCATGATTTGCTGACAAACTCACCAAATGTTCGAATTGGGCTGGAGGTTTCTTGATCTTAGAATTGTTCTAGCTCAATTACTCCTCCGAGTTCTATATAAATTTATTTTCTCTTTCTGAATCATTAAGTGATAACACATCATACATGTAACTATGTAGCTCCGTTATATTTTCTGTTCTATGAGTTTGTCTAATGGAGTTATGCACGTCTATGCTTTATTCCCTTGTTTGATAAGTACTTACTTAGGAAAGCCCAAAAAGTGGTTTTTGTTGTTTTTTTTTATCATTAGATAAGATAGAGGAAAATTACGTTGATTATCTTGGAGATGTAATTTCACTACCCTTTGGGCTTTTATGATTGCAGTTATAA

mRNA sequence

ATGGTGCTAGCAGAGGAGGAAATCACCAGGCTTTTCAGAGTTCGAAAAACTGTGTTACAAATGCTTAAAGACCGAGGCTACTTCGTTGGAGACTTTGAGGTTGACATGTCCAGAGAGCAATTTAAGAATAAATATGGTGAAAGCATGAAACGAGAAGATATCGTGATCAACAAAGCGAAGAGAAATGATAGCTCTGATCAGATATACATTTTCTTTCCAGAAGAACCGAAGGTTGGCGTCAAGACAATGAAAACGTACACCAACCGCATGAAATCGGAGAATGTTTTTAGAGCAATATTGGTCGTTCAACAGAATTTGACCCCTTTCGCTCGCACCTGTATAAGTGAAATATCTACCAAATTCCACTTGGAAGTTTTCCAGGAAGCAGAATTACTAGTTAATATCAAAGATCACGTTCTTGTTCCTGAGCACCAGTTACTTTCCAACGAAGAGAAAAAGACACTACTGGAGCGATATACCGTGAAAGAAACACAGCTACCGCGCATACAGGTGACCGACCCAGTTGCGAGATACTACGGGCTAAAGCGTGGACAAGTTGTGAAGATCATCAGACCAATGCCCCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCCCCGATCTCAATTTCGTCTCTTCCCCTCTCTCTCTCCGCTGTTCCCGGCCGCCGGAGCTACTTCTTCACTCTCCTCACACCCCATTCTCCACCCCCTTTTCCCCTCAATTTCATCTCATTCTTCGATTCGATTCCCGCAACCTCTGTTTCTCGATCGCTTTCTCCATCTCTTACCGTTTTCTGGCGCCTCTTTGCTCTTCTTTTCCACCCTTCGCCGCCGAGTTATAA

Coding sequence (CDS)

ATGGTGCTAGCAGAGGAGGAAATCACCAGGCTTTTCAGAGTTCGAAAAACTGTGTTACAAATGCTTAAAGACCGAGGCTACTTCGTTGGAGACTTTGAGGTTGACATGTCCAGAGAGCAATTTAAGAATAAATATGGTGAAAGCATGAAACGAGAAGATATCGTGATCAACAAAGCGAAGAGAAATGATAGCTCTGATCAGATATACATTTTCTTTCCAGAAGAACCGAAGGTTGGCGTCAAGACAATGAAAACGTACACCAACCGCATGAAATCGGAGAATGTTTTTAGAGCAATATTGGTCGTTCAACAGAATTTGACCCCTTTCGCTCGCACCTGTATAAGTGAAATATCTACCAAATTCCACTTGGAAGTTTTCCAGGAAGCAGAATTACTAGTTAATATCAAAGATCACGTTCTTGTTCCTGAGCACCAGTTACTTTCCAACGAAGAGAAAAAGACACTACTGGAGCGATATACCGTGAAAGAAACACAGCTACCGCGCATACAGGTGACCGACCCAGTTGCGAGATACTACGGGCTAAAGCGTGGACAAGTTGTGAAGATCATCAGACCAATGCCCCCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCCCCGATCTCAATTTCGTCTCTTCCCCTCTCTCTCTCCGCTGTTCCCGGCCGCCGGAGCTACTTCTTCACTCTCCTCACACCCCATTCTCCACCCCCTTTTCCCCTCAATTTCATCTCATTCTTCGATTCGATTCCCGCAACCTCTGTTTCTCGATCGCTTTCTCCATCTCTTACCGTTTTCTGGCGCCTCTTTGCTCTTCTTTTCCACCCTTCGCCGCCGAGTTATAA

Protein sequence

MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKRNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTKFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPMPPLFSSLLFSSLLFPDLNFVSSPLSLRCSRPPELLLHSPHTPFSTPFSPQFHLILRFDSRNLCFSIAFSISYRFLAPLCSSFPPFAAEL

Homology

[Close]

BLAST of Csor.00g007290 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.2e-83
Identity = 152/191 (79.58%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 2   VLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKR 61
           +L EEE+ RL+R++KT++QML+DRGYF+ D E+ M+++QF  K+G++MKRED+V  KAKR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTKF 121
           ND+SDQ+YIFFP+E KVGVKTMK YTNRMKSENVFRAILVVQQNLTPFARTCISEIS+KF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 122 HLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 181
           HLEVFQEAE+LVNIK+HVLVPEHQ+L+ EEKKTLLERYTVKETQLPRIQVTDP+ARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 182 KRGQVVKIIRP 193
           KRGQVVKIIRP
Sbjct: 181 KRGQVVKIIRP 191

[Close]

BLAST of Csor.00g007290 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.7e-50
Identity = 98/193 (50.78%), Postives = 142/193 (73.58%), Query Frame = 0


Query: 5   EEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGES-----MKREDIVINKA 64
           EEE  RL+++RKT++Q+  DRGY V   E+D + E+FK ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIST 124
             +D +DQ+++FFPEEPKVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
           K+ LE F + ELL+NI +H LVPEH +++ EE   LL RY ++E+QLPRIQ  DPVARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRP 193
           G+KRGQVVKIIRP
Sbjct: 184 GIKRGQVVKIIRP 196

[Close]

BLAST of Csor.00g007290 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.7e-50
Identity = 98/193 (50.78%), Postives = 142/193 (73.58%), Query Frame = 0


Query: 5   EEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGES-----MKREDIVINKA 64
           EEE  RL+++RKT++Q+  DRGY V   E+D + E+FK ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIST 124
             +D +DQ+++FFPEEPKVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
           K+ LE F + ELL+NI +H LVPEH +++ EE   LL RY ++E+QLPRIQ  DPVARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRP 193
           G+KRGQVVKIIRP
Sbjct: 184 GIKRGQVVKIIRP 196

[Close]

BLAST of Csor.00g007290 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 5.0e-50
Identity = 97/193 (50.26%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 5   EEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGES-----MKREDIVINKA 64
           EEE  RL+++RKT++Q+  DRGY V   E+D + E+F+ ++G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIST 124
             +D +DQ+++FFPEEPKVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
           K+ LE F + ELL+NI +H LVPEH +++ EE   LL RY ++E QLPRIQ  DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRP 193
           G+KRGQVVKIIRP
Sbjct: 184 GIKRGQVVKIIRP 196

[Close]

BLAST of Csor.00g007290 vs. ExPASy Swiss-Prot
Match: P19388 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens OX=9606 GN=POLR2E PE=1 SV=4)

HSP 1 Score: 198.7 bits (504), Expect = 8.5e-50
Identity = 98/193 (50.78%), Postives = 140/193 (72.54%), Query Frame = 0


Query: 5   EEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGES-----MKREDIVINKA 64
           EEE  RL+++RKT++Q+  DRGY V   E+D + E+FK + G+       +R D+ +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIST 124
             +D +DQ+++FFPEEPKVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 KFHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYY 184
           K+ LE F + ELL+NI +H LVPEH +++ EE   LL RY ++E QLPRIQ  DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183

Query: 185 GLKRGQVVKIIRP 193
           G+KRGQVVKIIRP
Sbjct: 184 GIKRGQVVKIIRP 196

[Close]

BLAST of Csor.00g007290 vs. NCBI nr
Match: KAG6593063.1 (DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 554 bits (1427), Expect = 1.05e-198
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRPMPPLFSSLLFSSLLFPDLNFVSSPLSLRCSRPPELLLHSPHTPFSTPF 240
           LKRGQVVKIIRPMPPLFSSLLFSSLLFPDLNFVSSPLSLRCSRPPELLLHSPHTPFSTPF
Sbjct: 181 LKRGQVVKIIRPMPPLFSSLLFSSLLFPDLNFVSSPLSLRCSRPPELLLHSPHTPFSTPF 240

Query: 241 SPQFHLILRFDSRNLCFSIAFSISYRFLAPLCSSFPPFAAEL 282
           SPQFHLILRFDSRNLCFSIAFSISYRFLAPLCSSFPPFAAEL
Sbjct: 241 SPQFHLILRFDSRNLCFSIAFSISYRFLAPLCSSFPPFAAEL 282

[Close]

BLAST of Csor.00g007290 vs. NCBI nr
Match: XP_022959553.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959554.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959555.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_023004795.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004796.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004797.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023513561.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo] >XP_023513563.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375 bits (964), Expect = 2.35e-129
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRP 192
           LKRGQVVKIIRP
Sbjct: 181 LKRGQVVKIIRP 192

[Close]

BLAST of Csor.00g007290 vs. NCBI nr
Match: XP_022991826.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023547519.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364 bits (934), Expect = 8.69e-125
Identity = 182/192 (94.79%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVL+EEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK+KYGESMKREDIVINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVN+KDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRP 192
           LKRGQVVKIIRP
Sbjct: 181 LKRGQVVKIIRP 192

[Close]

BLAST of Csor.00g007290 vs. NCBI nr
Match: XP_022953770.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata])

HSP 1 Score: 363 bits (933), Expect = 1.23e-124
Identity = 181/192 (94.27%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVL+EEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK+KYGESMKRED+VINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDVVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVN+KDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRP 192
           LKRGQVVKIIRP
Sbjct: 181 LKRGQVVKIIRP 192

[Close]

BLAST of Csor.00g007290 vs. NCBI nr
Match: XP_022143609.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia])

HSP 1 Score: 361 bits (926), Expect = 1.43e-123
Identity = 181/192 (94.27%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVL+EEEITRLFR+RKTVLQMLKDR YFVGDFE+DMSREQFK+KYGE+MKREDIVINKA+
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRP 192
           LKRGQVVKIIRP
Sbjct: 181 LKRGQVVKIIRP 192

[Close]

BLAST of Csor.00g007290 vs. ExPASy TrEMBL
Match: A0A6J1KT45 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111497988 PE=3 SV=1)

HSP 1 Score: 375 bits (964), Expect = 1.14e-129
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRP 192
           LKRGQVVKIIRP
Sbjct: 181 LKRGQVVKIIRP 192

[Close]

BLAST of Csor.00g007290 vs. ExPASy TrEMBL
Match: A0A6J1H699 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111460591 PE=3 SV=1)

HSP 1 Score: 375 bits (964), Expect = 1.14e-129
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRP 192
           LKRGQVVKIIRP
Sbjct: 181 LKRGQVVKIIRP 192

[Close]

BLAST of Csor.00g007290 vs. ExPASy TrEMBL
Match: A0A6J1JRV4 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111488357 PE=3 SV=1)

HSP 1 Score: 364 bits (934), Expect = 4.21e-125
Identity = 182/192 (94.79%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVL+EEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK+KYGESMKREDIVINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVN+KDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRP 192
           LKRGQVVKIIRP
Sbjct: 181 LKRGQVVKIIRP 192

[Close]

BLAST of Csor.00g007290 vs. ExPASy TrEMBL
Match: A0A6J1GQK9 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111456196 PE=3 SV=1)

HSP 1 Score: 363 bits (933), Expect = 5.97e-125
Identity = 181/192 (94.27%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVL+EEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK+KYGESMKRED+VINKAK
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDVVINKAK 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMK+ENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVN+KDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRP 192
           LKRGQVVKIIRP
Sbjct: 181 LKRGQVVKIIRP 192

[Close]

BLAST of Csor.00g007290 vs. ExPASy TrEMBL
Match: A0A6J1CPU1 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX=3673 GN=LOC111013465 PE=3 SV=1)

HSP 1 Score: 361 bits (926), Expect = 6.95e-124
Identity = 181/192 (94.27%), Postives = 190/192 (98.96%), Query Frame = 0


Query: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60
           MVL+EEEITRLFR+RKTVLQMLKDR YFVGDFE+DMSREQFK+KYGE+MKREDIVINKA+
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120
           RNDSSDQIY+FFPEE KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEIS+K
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180
           FHLEVFQEAELLVNIKDHVLVPEHQLL+NEEKKTLLERYTVKETQLPRIQVTDPVARYYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 LKRGQVVKIIRP 192
           LKRGQVVKIIRP
Sbjct: 181 LKRGQVVKIIRP 192

[Close]

BLAST of Csor.00g007290 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 311.2 bits (796), Expect = 8.4e-85
Identity = 152/191 (79.58%), Postives = 179/191 (93.72%), Query Frame = 0


Query: 2   VLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKR 61
           +L EEE+ RL+R++KT++QML+DRGYF+ D E+ M+++QF  K+G++MKRED+V  KAKR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTKF 121
           ND+SDQ+YIFFP+E KVGVKTMK YTNRMKSENVFRAILVVQQNLTPFARTCISEIS+KF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 122 HLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 181
           HLEVFQEAE+LVNIK+HVLVPEHQ+L+ EEKKTLLERYTVKETQLPRIQVTDP+ARY+GL
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 182 KRGQVVKIIRP 193
           KRGQVVKIIRP
Sbjct: 181 KRGQVVKIIRP 191

[Close]

BLAST of Csor.00g007290 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-43
Identity = 91/191 (47.64%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 5   EEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESM---KREDIVINKAKR 64
           ++EITR+F+VR+TVLQML+DRGY + + ++++ RE+F  ++ ++M    +E + ++  K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NDSSDQIYIFFPEEPKVGVKTM-KTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 124
            + +D+IY+F+PE PKVGV  + K    +M+ + V R I+VV   +T  AR  +SE++  
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124

Query: 125 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 184
             +EVF+EAEL+ NI +H LV ++ +L ++ KK LL  YTV++TQLPRI VTDP+ARYYG
Sbjct: 125 LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYG 184

Query: 185 LKRGQVVKIIR 192
           LKRGQVVKI R
Sbjct: 185 LKRGQVVKIRR 195

[Close]

BLAST of Csor.00g007290 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 129.4 bits (324), Expect = 4.5e-30
Identity = 75/188 (39.89%), Postives = 117/188 (62.23%), Query Frame = 0


Query: 3   LAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKRN 62
           L+ EE  R +  R+  LQML+DRGY V D ++++S   F+  YGE    + + I+   R+
Sbjct: 20  LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79

Query: 63  DSSDQIYIFFPEEPKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCISEISTKF 122
           DS+ ++ I F     V V  +++   + +  E +   ILV+Q ++T  A   I   S  F
Sbjct: 80  DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--F 139

Query: 123 HLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGL 182
            +E+FQ  +LLVNI  H L P+HQ+L++EEK TLL++++++E QLPRI   D + RYYGL
Sbjct: 140 KVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGL 199

Query: 183 KRGQVVKI 190
           ++GQVVK+
Sbjct: 200 EKGQVVKV 205

[Close]

BLAST of Csor.00g007290 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 126.7 bits (317), Expect = 2.9e-29
Identity = 70/184 (38.04%), Postives = 118/184 (64.13%), Query Frame = 0


Query: 7   EITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKRNDSSD 66
           E  + +  R+T ++ML+DRGY V D ++++S +QF+  YGE    + + I+   R DSS 
Sbjct: 20  ECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSK 79

Query: 67  QIYIFFPEEPKVGVKTMKTY-TNRMKSENVFRAILVVQQNLTPFARTCISEISTKFHLEV 126
           +I + F     V V  M+    + +  EN+   ILV+Q ++T  A   +   S  F +E+
Sbjct: 80  KISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFS--FKVEL 139

Query: 127 FQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQ 186
           F+  +LLVN+  HVL P+HQ+L+++EK++LL++++++E QLPR+   DP+ RYYGL+ GQ
Sbjct: 140 FEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQ 199

Query: 187 VVKI 190
           V+K+
Sbjct: 200 VMKV 201

[Close]

BLAST of Csor.00g007290 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-22
Identity = 62/191 (32.46%), Postives = 108/191 (56.54%), Query Frame = 0


Query: 7   EITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAKRNDSSD 66
           E  R +  R T  +ML+DRGY V + E+ ++  +F++ +GE  + E + I    R+D   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYIFFPEEPKVGVKTMKTYTNRMKSE-NVFRAILVVQQNLTPFARTCISEISTKFHLEV 126
           +I + F     + VK+++    ++ +   +   ILV+Q  +  FA+  ++  +  F +E 
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALT--TFPFTVET 154

Query: 127 FQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQ 186
           F   +LLVNI  H+  P+ ++L+ EEK+ LL ++ +++ QLP +Q  D   RYYGLK+ Q
Sbjct: 155 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQ 214

Query: 187 VVKIIRPMPPL 197
           VVKI     P+
Sbjct: 215 VVKITYSKEPV 223

The following BLAST results are available for this feature:

BLAST of Csor.00g007290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81098	1.2e-83	79.58	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
Q80UW8	1.7e-50	50.78	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10...	[more]
B0BNE2	1.7e-50	50.78	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]
Q5R587	5.0e-50	50.26	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=96...	[more]
P19388	8.5e-50	50.78	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens OX=96...	[more]

BLAST of Csor.00g007290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593063.1	1.05e-198	100.00	DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosper...	[more]
XP_022959553.1	2.35e-129	100.00	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_...	[more]
XP_022991826.1	8.69e-125	94.79	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_02...	[more]
XP_022953770.1	1.23e-124	94.27	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata]	[more]
XP_022143609.1	1.43e-123	94.27	DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia]	[more]

BLAST of Csor.00g007290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KT45	1.14e-129	100.00	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1H699	1.14e-129	100.00	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=...	[more]
A0A6J1JRV4	4.21e-125	94.79	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1GQK9	5.97e-125	94.27	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=...	[more]
A0A6J1CPU1	6.95e-124	94.27	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX...	[more]

BLAST of Csor.00g007290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22320.1	8.4e-85	79.58	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	1.2e-43	47.64	RNA polymerase II fifth largest subunit, C	[more]
AT3G57080.1	4.5e-30	39.89	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT2G41340.1	2.9e-29	38.04	RNA polymerase II fifth largest subunit, D	[more]
AT3G54490.1	2.6e-22	32.46	RNA polymerase II fifth largest subunit, E	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 5..90 e-value: 1.6E-31 score: 108.7
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 133..192 e-value: 2.1E-26 score: 91.6
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 3..130 e-value: 2.5E-47 score: 162.4
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 5..134
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 131..202 e-value: 4.3E-26 score: 92.4
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 131..194
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 1..192
None	No IPR available	PANTHER	PTHR10535:SF17	DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKE	coord: 1..192
IPR020608	RNA polymerase, subunit H/Rpb5, conserved site	PROSITE	PS01110	RNA_POL_H_23KD	coord: 138..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g007290.m01	Csor.00g007290.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity