Csor.00g006180 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g006180
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Cell division protein like
Location	Csor_Chr08: 2342703 .. 2343626 (-)
RNA-Seq Expression	Csor.00g006180
Synteny	Csor.00g006180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGTTCTATTTTCTCGACTGGGAAATTCCATCCCCTTCTCCGGCCTTTTCAGGTAATTCCTCAAAACTAGTTTCTAGAGATTCTCTTACCAGCGTTGTTTGTTGAACACTTTCTGTAACCTATAACTTTTGGACTAAGAAATGTTTATTCCAGTGAATAATGTTACTGATGATTTGGTTTGCTTAGTAATACAATCGCGTCGGTCAAATTCTTGTTAATTTGTAATATTGATGTCATCGCGAGTGCCGGAATCGCAGTTTTATCATCATGTTTATGTGCATGTCTTTGTAAATTTGATTTTGGTGGCTTTGTTATTTCTTTTGCTTGAGAGGTGCTAATTTCTAAATCGAAAAATCGTTGGTACTATGCTTATGCTGAATTAATGTGATTTTTAATGCAAAATCTGATGGTAAGGGGCTCTAGAAGTGTTCTGTACAAACAGGTTTTGGTTAGTGGAACAAAATTTTTATTGAACGAGGTCTGGTTAGCTACTTTTTTCAAGTTAATTCTCTTCGATGTTTTTGTGGATGGTCTATTTCTTTGAACTAAAATTCTTGCATACATGTGAATATTGATTTTAAGTTTAGATCAACTTTAACTCTTATATTAAGAAAAGTGCGCAATAACCTTAACTTTACAGCCCACCTAATTACTTCTAATCGAAGTTTTAAAAAACAGAAGCATAAAGTTGTTTTTCTAGGACAACTCTTAATGTTTTTCTTTCCCCGTATAGGCAACTGGAGCAAGAGATGGAAACTGTCATAAGGGTTTTGCAGCCTGGACCTTTGGGGATTATTGAACACAAGTTTTCTGCTGAGGAGATTCGCCGGGCACAAGCCACTGTTCGCGAAGCAGTAAATAACTGGCGGAGGAATACAAGTATTGAAAAACAAAGTAGTGTGTCAAGTAATCGTATTTAG

mRNA sequence

ATGCCAGTTCTATTTTCTCGACTGGGAAATTCCATCCCCTTCTCCGGCCTTTTCAGGCAACTGGAGCAAGAGATGGAAACTGTCATAAGGGTTTTGCAGCCTGGACCTTTGGGGATTATTGAACACAAGTTTTCTGCTGAGGAGATTCGCCGGGCACAAGCCACTGTTCGCGAAGCAGTAAATAACTGGCGGAGGAATACAAGTATTGAAAAACAAAGTAGTGTGTCAAGTAATCGTATTTAG

Coding sequence (CDS)

ATGCCAGTTCTATTTTCTCGACTGGGAAATTCCATCCCCTTCTCCGGCCTTTTCAGGCAACTGGAGCAAGAGATGGAAACTGTCATAAGGGTTTTGCAGCCTGGACCTTTGGGGATTATTGAACACAAGTTTTCTGCTGAGGAGATTCGCCGGGCACAAGCCACTGTTCGCGAAGCAGTAAATAACTGGCGGAGGAATACAAGTATTGAAAAACAAAGTAGTGTGTCAAGTAATCGTATTTAG

Protein sequence

MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAVNNWRRNTSIEKQSSVSSNRI

Homology

[Close]

BLAST of Csor.00g006180 vs. NCBI nr
Match: KAG6593168.1 (hypothetical protein SDJN03_12644, partial [Cucurbita argyrosperma subsp. sororia] >KAG6593174.1 hypothetical protein SDJN03_12650, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025565.1 hypothetical protein SDJN02_12061, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154 bits (389), Expect = 4.89e-47
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60
          MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV
Sbjct: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60

Query: 61 NNWRRNTSIEKQSSVSSNRI 80
          NNWRRNTSIEKQSSVSSNRI
Sbjct: 61 NNWRRNTSIEKQSSVSSNRI 80

[Close]

BLAST of Csor.00g006180 vs. NCBI nr
Match: XP_023513754.1 (uncharacterized protein LOC111778268 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153 bits (386), Expect = 1.40e-46
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60
          MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV
Sbjct: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60

Query: 61 NNWRRNTSIEKQSSVSSNRI 80
          NNWRRNTSIEKQSS+SSNRI
Sbjct: 61 NNWRRNTSIEKQSSMSSNRI 80

[Close]

BLAST of Csor.00g006180 vs. NCBI nr
Match: XP_022959944.1 (uncharacterized protein LOC111460845 [Cucurbita moschata])

HSP 1 Score: 149 bits (375), Expect = 6.70e-45
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60
          MP LFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIR+AQATVREAV
Sbjct: 1  MPGLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRQAQATVREAV 60

Query: 61 NNWRRNTSIEKQSSVSSNRI 80
          NNWRRNTSIEKQSS+SSNRI
Sbjct: 61 NNWRRNTSIEKQSSMSSNRI 80

[Close]

BLAST of Csor.00g006180 vs. NCBI nr
Match: XP_023004711.1 (uncharacterized protein LOC111497926 [Cucurbita maxima])

HSP 1 Score: 140 bits (352), Expect = 1.87e-41
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60
          MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIR AQATVREAV
Sbjct: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRWAQATVREAV 60

Query: 61 NNWRRNTSIEKQSSV 75
          NNWRRNT IEKQSS+
Sbjct: 61 NNWRRNTCIEKQSSM 75

[Close]

BLAST of Csor.00g006180 vs. NCBI nr
Match: XP_011659338.1 (uncharacterized protein LOC101214859 [Cucumis sativus] >KGN44894.1 hypothetical protein Csa_015958 [Cucumis sativus])

HSP 1 Score: 138 bits (347), Expect = 1.25e-40
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60
          M + FSRLG+SIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEE+RRAQ+TVREAV
Sbjct: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60

Query: 61 NNWRRNTSIEKQSSVSSN 78
          NNWRRNT IEKQSS+SSN
Sbjct: 61 NNWRRNTIIEKQSSISSN 78

[Close]

BLAST of Csor.00g006180 vs. ExPASy TrEMBL
Match: A0A6J1H9I7 (uncharacterized protein LOC111460845 OS=Cucurbita moschata OX=3662 GN=LOC111460845 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 3.24e-45
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60
          MP LFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIR+AQATVREAV
Sbjct: 1  MPGLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRQAQATVREAV 60

Query: 61 NNWRRNTSIEKQSSVSSNRI 80
          NNWRRNTSIEKQSS+SSNRI
Sbjct: 61 NNWRRNTSIEKQSSMSSNRI 80

[Close]

BLAST of Csor.00g006180 vs. ExPASy TrEMBL
Match: A0A6J1KSW4 (uncharacterized protein LOC111497926 OS=Cucurbita maxima OX=3661 GN=LOC111497926 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 9.08e-42
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60
          MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIR AQATVREAV
Sbjct: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRWAQATVREAV 60

Query: 61 NNWRRNTSIEKQSSV 75
          NNWRRNT IEKQSS+
Sbjct: 61 NNWRRNTCIEKQSSM 75

[Close]

BLAST of Csor.00g006180 vs. ExPASy TrEMBL
Match: A0A0A0K7N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394630 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 6.07e-41
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60
          M + FSRLG+SIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEE+RRAQ+TVREAV
Sbjct: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60

Query: 61 NNWRRNTSIEKQSSVSSN 78
          NNWRRNT IEKQSS+SSN
Sbjct: 61 NNWRRNTIIEKQSSISSN 78

[Close]

BLAST of Csor.00g006180 vs. ExPASy TrEMBL
Match: A0A1S3BRC3 (uncharacterized protein LOC103492858 OS=Cucumis melo OX=3656 GN=LOC103492858 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 6.07e-41
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60
          M + FSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEE+RRAQ+TVREAV
Sbjct: 1  MAISFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60

Query: 61 NNWRRNTSIEKQSSVSSN 78
          NNWRRNT IEKQS +SSN
Sbjct: 61 NNWRRNTLIEKQSCISSN 78

[Close]

BLAST of Csor.00g006180 vs. ExPASy TrEMBL
Match: A0A6J1D4Y2 (uncharacterized protein LOC111017642 OS=Momordica charantia OX=3673 GN=LOC111017642 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 1.43e-39
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MPVLFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAV 60
          MP+  SRLGNSIPFSG FRQLEQEM TVIRVLQPGPLGIIEHKFSAEE+R+AQ+TVREAV
Sbjct: 1  MPISLSRLGNSIPFSGTFRQLEQEMXTVIRVLQPGPLGIIEHKFSAEEMRQAQSTVREAV 60

Query: 61 NNWRRNTSIEKQSSVSSNRI 80
          NNW RNTSIEKQSS+SS+ I
Sbjct: 61 NNWXRNTSIEKQSSISSSHI 80

[Close]

BLAST of Csor.00g006180 vs. TAIR 10
Match: AT3G62920.1 (unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 93.6 bits (231), Expect = 7.8e-20
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 7  RLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEIRRAQATVREAVNNWRRN 66
          R+  ++PFSG+ RQLE+E ETVI VLQPGPLGIIEHKFSA+EIR A+ATV  AV++WRR+
Sbjct: 5  RIARALPFSGILRQLEKEAETVINVLQPGPLGIIEHKFSAQEIREAKATVSRAVDSWRRH 64

Query: 67 TSIEKQSSVSSNRI 81
          + +E  + +  + I
Sbjct: 65 SEVEHANGLLKDYI 78

The following BLAST results are available for this feature:

BLAST of Csor.00g006180 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g006180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593168.1	4.89e-47	100.00	hypothetical protein SDJN03_12644, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023513754.1	1.40e-46	98.75	uncharacterized protein LOC111778268 [Cucurbita pepo subsp. pepo]	[more]
XP_022959944.1	6.70e-45	96.25	uncharacterized protein LOC111460845 [Cucurbita moschata]	[more]
XP_023004711.1	1.87e-41	96.00	uncharacterized protein LOC111497926 [Cucurbita maxima]	[more]
XP_011659338.1	1.25e-40	89.74	uncharacterized protein LOC101214859 [Cucumis sativus] >KGN44894.1 hypothetical ...	[more]

BLAST of Csor.00g006180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H9I7	3.24e-45	96.25	uncharacterized protein LOC111460845 OS=Cucurbita moschata OX=3662 GN=LOC1114608...	[more]
A0A6J1KSW4	9.08e-42	96.00	uncharacterized protein LOC111497926 OS=Cucurbita maxima OX=3661 GN=LOC111497926...	[more]
A0A0A0K7N1	6.07e-41	89.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394630 PE=4 SV=1	[more]
A0A1S3BRC3	6.07e-41	89.74	uncharacterized protein LOC103492858 OS=Cucumis melo OX=3656 GN=LOC103492858 PE=...	[more]
A0A6J1D4Y2	1.43e-39	85.00	uncharacterized protein LOC111017642 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Csor.00g006180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62920.1	7.8e-20	59.46	unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37235	ZINC METALLOPROTEINASE AUREOLYSIN	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g006180.m01	Csor.00g006180.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division