Csor.00g005940 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGATGAGGCGTCAGGCTCTTGGATCACATTTGGTAAAAGAGGCGTGGATTTTAAATTTTAGTTATTTCTGGACATTTTGCAGATCCCGATCAAGATCCAGATCTCCATTGCCCAATGTAAGTGATACCTGTTACAATCTATTATTTTATATCGTGTTATATTATTGTGTATTTTTTCTCTGGCCATACAAGTTTATAGTAAACTTGTGTTCGCATATGATTATGGCTTATATGGCAGCGTGAGAAACGTACTAGTAAAAGTCCCAACCGGTGTGATGCTAGCAAAAGCCCTAGCAGAAGCAGGAGCAAGAGCAAGAGCAAGAGCCCGTCCCGGTAGAGCTTTTGGTAATTTTGTTTTCCGCCATGGATTGTGCACACATTGTATAACTGTATGTCCTTGAAACATTTTGTGATTCAAATCCTTGTTCTGACTGTTTGAAACAGATGAAGATGGAGCTGAAATCCAGTATGATAGAAACTATGTCTTGTTTGGACTCTCATGTGATAGGCTCGAGGGAGTTCGTATCCGAGTATTAGTCGGTGAACCTATCAGAATAGACTTTATGGTAGTAACTATGTTTTGTTTGGTGATTTATAATGTTCCCAAAATTTACATTCTTAGTTTCAGGATAGCATTTAAAAATTTGTTACTACTTGGATTGTATTTTGGTTGTCGTCAAGTATTTCCTGAGGTTCGAGATATTATTTGGTGTAACTTTTTAA ATGTGGATGAGGCATCCCGATCAAGATCCAGATCTCCATTGCCCAATCGTGAGAAACGTACTAGTAAAAGTCCCAACCGGTGTGATGCTAGCAAAAGCCCTAGCAGAAGCAGGAGCAAGAGCAAGAGCAAGAGCCCGTCCCGGTAGAGCTTTTGATGAAGATGGAGCTGAAATCCAGTATGATAGAAACTATGTCTTGTTTGGACTCTCATGTGATAGGCTCGAGGGAGTTCGTATCCGAGTATTAGTCGGTGAACCTATCAGAATAGACTTTATGTATTTCCTGAGGTTCGAGATATTATTTGGTGTAACTTTTTAA ATGTGGATGAGGCATCCCGATCAAGATCCAGATCTCCATTGCCCAATCGTGAGAAACGTACTAGTAAAAGTCCCAACCGGTGTGATGCTAGCAAAAGCCCTAGCAGAAGCAGGAGCAAGAGCAAGAGCAAGAGCCCGTCCCGGTAGAGCTTTTGATGAAGATGGAGCTGAAATCCAGTATGATAGAAACTATGTCTTGTTTGGACTCTCATGTGATAGGCTCGAGGGAGTTCGTATCCGAGTATTAGTCGGTGAACCTATCAGAATAGACTTTATGTATTTCCTGAGGTTCGAGATATTATTTGGTGTAACTTTTTAA MWMRHPDQDPDLHCPIVRNVLVKVPTGVMLAKALAEAGARARARARPGRAFDEDGAEIQYDRNYVLFGLSCDRLEGVRIRVLVGEPIRIDFMYFLRFEILFGVTF Homology
BLAST of Csor.00g005940 vs. NCBI nr
Match: KAG6593197.1 (hypothetical protein SDJN03_12673, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 214 bits (544), Expect = 6.66e-70 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
BLAST of Csor.00g005940 vs. NCBI nr
Match: KAG7030219.1 (Serine/arginine-rich-splicing factor SR34, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 168 bits (426), Expect = 3.98e-47 Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of Csor.00g005940 vs. NCBI nr
Match: KAA0067995.1 (serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo var. makuwa] >TYK18132.1 serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 67.4 bits (163), Expect = 1.93e-10 Identity = 39/55 (70.91%), Postives = 40/55 (72.73%), Query Frame = 0
BLAST of Csor.00g005940 vs. NCBI nr
Match: KAG6575827.1 (hypothetical protein SDJN03_26466, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 54.7 bits (130), Expect = 4.47e-07 Identity = 37/54 (68.52%), Postives = 38/54 (70.37%), Query Frame = 0
BLAST of Csor.00g005940 vs. NCBI nr
Match: CBI36849.3 (unnamed protein product, partial [Vitis vinifera]) HSP 1 Score: 48.1 bits (113), Expect = 1.29e-04 Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0
BLAST of Csor.00g005940 vs. ExPASy TrEMBL
Match: A0A5D3D2K1 (Serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00620 PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 9.35e-11 Identity = 39/55 (70.91%), Postives = 40/55 (72.73%), Query Frame = 0
BLAST of Csor.00g005940 vs. ExPASy TrEMBL
Match: D7U283 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g00330 PE=4 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 6.22e-05 Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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