Csor.00g005940 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g005940
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionSerine/arginine-rich-splicing factor SR34-like isoform X1
LocationCsor_Chr08: 2478797 .. 2479522 (-)
RNA-Seq ExpressionCsor.00g005940
SyntenyCsor.00g005940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGATGAGGCGTCAGGCTCTTGGATCACATTTGGTAAAAGAGGCGTGGATTTTAAATTTTAGTTATTTCTGGACATTTTGCAGATCCCGATCAAGATCCAGATCTCCATTGCCCAATGTAAGTGATACCTGTTACAATCTATTATTTTATATCGTGTTATATTATTGTGTATTTTTTCTCTGGCCATACAAGTTTATAGTAAACTTGTGTTCGCATATGATTATGGCTTATATGGCAGCGTGAGAAACGTACTAGTAAAAGTCCCAACCGGTGTGATGCTAGCAAAAGCCCTAGCAGAAGCAGGAGCAAGAGCAAGAGCAAGAGCCCGTCCCGGTAGAGCTTTTGGTAATTTTGTTTTCCGCCATGGATTGTGCACACATTGTATAACTGTATGTCCTTGAAACATTTTGTGATTCAAATCCTTGTTCTGACTGTTTGAAACAGATGAAGATGGAGCTGAAATCCAGTATGATAGAAACTATGTCTTGTTTGGACTCTCATGTGATAGGCTCGAGGGAGTTCGTATCCGAGTATTAGTCGGTGAACCTATCAGAATAGACTTTATGGTAGTAACTATGTTTTGTTTGGTGATTTATAATGTTCCCAAAATTTACATTCTTAGTTTCAGGATAGCATTTAAAAATTTGTTACTACTTGGATTGTATTTTGGTTGTCGTCAAGTATTTCCTGAGGTTCGAGATATTATTTGGTGTAACTTTTTAA

mRNA sequence

ATGTGGATGAGGCATCCCGATCAAGATCCAGATCTCCATTGCCCAATCGTGAGAAACGTACTAGTAAAAGTCCCAACCGGTGTGATGCTAGCAAAAGCCCTAGCAGAAGCAGGAGCAAGAGCAAGAGCAAGAGCCCGTCCCGGTAGAGCTTTTGATGAAGATGGAGCTGAAATCCAGTATGATAGAAACTATGTCTTGTTTGGACTCTCATGTGATAGGCTCGAGGGAGTTCGTATCCGAGTATTAGTCGGTGAACCTATCAGAATAGACTTTATGTATTTCCTGAGGTTCGAGATATTATTTGGTGTAACTTTTTAA

Coding sequence (CDS)

ATGTGGATGAGGCATCCCGATCAAGATCCAGATCTCCATTGCCCAATCGTGAGAAACGTACTAGTAAAAGTCCCAACCGGTGTGATGCTAGCAAAAGCCCTAGCAGAAGCAGGAGCAAGAGCAAGAGCAAGAGCCCGTCCCGGTAGAGCTTTTGATGAAGATGGAGCTGAAATCCAGTATGATAGAAACTATGTCTTGTTTGGACTCTCATGTGATAGGCTCGAGGGAGTTCGTATCCGAGTATTAGTCGGTGAACCTATCAGAATAGACTTTATGTATTTCCTGAGGTTCGAGATATTATTTGGTGTAACTTTTTAA

Protein sequence

MWMRHPDQDPDLHCPIVRNVLVKVPTGVMLAKALAEAGARARARARPGRAFDEDGAEIQYDRNYVLFGLSCDRLEGVRIRVLVGEPIRIDFMYFLRFEILFGVTF
Homology
BLAST of Csor.00g005940 vs. NCBI nr
Match: KAG6593197.1 (hypothetical protein SDJN03_12673, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214 bits (544), Expect = 6.66e-70
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MWMRHPDQDPDLHCPIVRNVLVKVPTGVMLAKALAEAGARARARARPGRAFDEDGAEIQY 60
           MWMRHPDQDPDLHCPIVRNVLVKVPTGVMLAKALAEAGARARARARPGRAFDEDGAEIQY
Sbjct: 1   MWMRHPDQDPDLHCPIVRNVLVKVPTGVMLAKALAEAGARARARARPGRAFDEDGAEIQY 60

Query: 61  DRNYVLFGLSCDRLEGVRIRVLVGEPIRIDFMYFLRFEILFGVTF 105
           DRNYVLFGLSCDRLEGVRIRVLVGEPIRIDFMYFLRFEILFGVTF
Sbjct: 61  DRNYVLFGLSCDRLEGVRIRVLVGEPIRIDFMYFLRFEILFGVTF 105

BLAST of Csor.00g005940 vs. NCBI nr
Match: KAG7030219.1 (Serine/arginine-rich-splicing factor SR34, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168 bits (426), Expect = 3.98e-47
Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 0

Query: 3   MRHPDQDPDLHCPIVRNVLVKVPTGVMLAKALAEAGARARARARPGRAFDEDGAEIQYDR 62
           M  PDQDPDLHCPIVRNVLVKVPTGVMLAKALAEAGARARAR  PGRAFDEDGAEIQYDR
Sbjct: 440 MLDPDQDPDLHCPIVRNVLVKVPTGVMLAKALAEAGARARAR--PGRAFDEDGAEIQYDR 499

Query: 63  NYVLFGLSCDRLEGVRIRVLVGEPIRIDFM 92
           NYVLFGLSCDRLEGVRIRVLVGEPIRIDFM
Sbjct: 500 NYVLFGLSCDRLEGVRIRVLVGEPIRIDFM 527

BLAST of Csor.00g005940 vs. NCBI nr
Match: KAA0067995.1 (serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo var. makuwa] >TYK18132.1 serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.93e-10
Identity = 39/55 (70.91%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 7   DQDPDLHCPIVRNVLVKVPTGVMLAKALA------EAGARARARARPGRAFDEDG 55
           DQDP L CPIVRNVLVKVP GVMLAKALA      EAGA ARA+AR     DEDG
Sbjct: 305 DQDPGLQCPIVRNVLVKVPKGVMLAKALAGAEVGAEAGAEARAKARARVLLDEDG 359

BLAST of Csor.00g005940 vs. NCBI nr
Match: KAG6575827.1 (hypothetical protein SDJN03_26466, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 4.47e-07
Identity = 37/54 (68.52%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 3  MRHP-DQDPDLHCPIVRNVLVKVPTGVMLAKALAEAGA----RARARARPGRAF 51
          +RH  DQDP L   IVRNVLVKV  GV  AKALA AGA    RARARA PGRAF
Sbjct: 4  LRHNRDQDPGLRHLIVRNVLVKVQKGVKQAKALAGAGAGAEARARARALPGRAF 57

BLAST of Csor.00g005940 vs. NCBI nr
Match: CBI36849.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 48.1 bits (113), Expect = 1.29e-04
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 7  DQDPDLHCPIVRNVLVKVPTGVMLAKALAEAGARARARARPG 48
          DQDPDLH P+VRN L K    ++ A+A AEA A A+A+A PG
Sbjct: 42 DQDPDLHYPLVRNELAKAQRSIVPARARAEAAAEAQAKAFPG 83

BLAST of Csor.00g005940 vs. ExPASy TrEMBL
Match: A0A5D3D2K1 (Serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00620 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.35e-11
Identity = 39/55 (70.91%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 7   DQDPDLHCPIVRNVLVKVPTGVMLAKALA------EAGARARARARPGRAFDEDG 55
           DQDP L CPIVRNVLVKVP GVMLAKALA      EAGA ARA+AR     DEDG
Sbjct: 305 DQDPGLQCPIVRNVLVKVPKGVMLAKALAGAEVGAEAGAEARAKARARVLLDEDG 359

BLAST of Csor.00g005940 vs. ExPASy TrEMBL
Match: D7U283 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g00330 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.22e-05
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 7  DQDPDLHCPIVRNVLVKVPTGVMLAKALAEAGARARARARPG 48
          DQDPDLH P+VRN L K    ++ A+A AEA A A+A+A PG
Sbjct: 42 DQDPDLHYPLVRNELAKAQRSIVPARARAEAAAEAQAKAFPG 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6593197.16.66e-70100.00hypothetical protein SDJN03_12673, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030219.13.98e-4795.56Serine/arginine-rich-splicing factor SR34, partial [Cucurbita argyrosperma subsp... [more]
KAA0067995.11.93e-1070.91serine/arginine-rich-splicing factor SR34-like isoform X1 [Cucumis melo var. mak... [more]
KAG6575827.14.47e-0768.52hypothetical protein SDJN03_26466, partial [Cucurbita argyrosperma subsp. sorori... [more]
CBI36849.31.29e-0457.14unnamed protein product, partial [Vitis vinifera][more]
Match NameE-valueIdentityDescription
A0A5D3D2K19.35e-1170.91Serine/arginine-rich-splicing factor SR34-like isoform X1 OS=Cucumis melo var. m... [more]
D7U2836.22e-0557.14Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0005g00330 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g005940.m01Csor.00g005940.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding