Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTATCGACGTGTTTAAATCACAGCCTTGGATTTCCCTCATCGAACGGTTCAAAGATCACGGCATGTACGAGTTCGAATACTCCTCCGATCGGTAATGTCAGTTTCCGATCCGCCGCCGCGAAACGCTGCTTAAGATGCCGCACCGTTTACTCCGACCTCGATAATTCTCCTTCGGCATGCGCCTTCCATGGCCACGTCACTGGTTCGAATCTTATCGTTATCTTTCCCTTCCAATTTTGCCTTCTTTTTAATCGGTGTTGATTAACAGGGGAGAGTGGGTTGTTTTCGTTGTCGCCGCCGCATCAGGGGATTGACGGCGAGTGGAGCGACGGCTCTGGTGTGATCGTTTACAAGTGGAATGAGAAGGGCAATCGTCCGAACACCGGCGCCGGCAACTGGAAGAGACGGTGGAGCTGTTGCTCTGAGTATGATGAAGATGCCCCTCCTTGTCGCCGGGGATGGCACGTTTCTTATGACGATGGTTTCACTTTGTTTTAG
mRNA sequence
ATGGCGTTATCGACGTGTTTAAATCACAGCCTTGGATTTCCCTCATCGAACGGTTCAAAGATCACGGCATGTACGAGTTCGAATACTCCTCCGATCGGTAATGTCAGTTTCCGATCCGCCGCCGCGAAACGCTGCTTAAGATGCCGCACCGTTTACTCCGACCTCGATAATTCTCCTTCGGCATGCGCCTTCCATGGCCACGTCACTGGGGAGAGTGGGTTGTTTTCGTTGTCGCCGCCGCATCAGGGGATTGACGGCGAGTGGAGCGACGGCTCTGGTGTGATCGTTTACAAGTGGAATGAGAAGGGCAATCGTCCGAACACCGGCGCCGGCAACTGGAAGAGACGGTGGAGCTGTTGCTCTGAGTATGATGAAGATGCCCCTCCTTGTCGCCGGGGATGGCACGTTTCTTATGACGATGGTTTCACTTTGTTTTAG
Coding sequence (CDS)
ATGGCGTTATCGACGTGTTTAAATCACAGCCTTGGATTTCCCTCATCGAACGGTTCAAAGATCACGGCATGTACGAGTTCGAATACTCCTCCGATCGGTAATGTCAGTTTCCGATCCGCCGCCGCGAAACGCTGCTTAAGATGCCGCACCGTTTACTCCGACCTCGATAATTCTCCTTCGGCATGCGCCTTCCATGGCCACGTCACTGGGGAGAGTGGGTTGTTTTCGTTGTCGCCGCCGCATCAGGGGATTGACGGCGAGTGGAGCGACGGCTCTGGTGTGATCGTTTACAAGTGGAATGAGAAGGGCAATCGTCCGAACACCGGCGCCGGCAACTGGAAGAGACGGTGGAGCTGTTGCTCTGAGTATGATGAAGATGCCCCTCCTTGTCGCCGGGGATGGCACGTTTCTTATGACGATGGTTTCACTTTGTTTTAG
Protein sequence
MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPSACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCCSEYDEDAPPCRRGWHVSYDDGFTLF
Homology
BLAST of Csor.00g004830 vs. NCBI nr
Match:
XP_022959906.1 (uncharacterized protein LOC111460822 [Cucurbita moschata] >KAG6593308.1 hypothetical protein SDJN03_12784, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 316 bits (809), Expect = 4.92e-109
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60
MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS
Sbjct: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60
Query: 61 ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120
ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC
Sbjct: 61 ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120
Query: 121 SEYDEDAPPCRRGWHVSYDDGFTLF 145
SEYDEDAPPCRRGWHVSYDDGFTLF
Sbjct: 121 SEYDEDAPPCRRGWHVSYDDGFTLF 145
BLAST of Csor.00g004830 vs. NCBI nr
Match:
XP_023004680.1 (uncharacterized protein LOC111497902 [Cucurbita maxima])
HSP 1 Score: 305 bits (782), Expect = 6.47e-105
Identity = 140/145 (96.55%), Postives = 141/145 (97.24%), Query Frame = 0
Query: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60
M LSTCLN L FPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS
Sbjct: 1 MELSTCLNRRLRFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60
Query: 61 ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120
ACAFHGH+TGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC
Sbjct: 61 ACAFHGHITGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120
Query: 121 SEYDEDAPPCRRGWHVSYDDGFTLF 145
SEYDEDAPPCRRGWHVSYDDGFTLF
Sbjct: 121 SEYDEDAPPCRRGWHVSYDDGFTLF 145
BLAST of Csor.00g004830 vs. NCBI nr
Match:
KAG7025658.1 (hypothetical protein SDJN02_12155, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 283 bits (724), Expect = 4.87e-96
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0
Query: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60
MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS
Sbjct: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60
Query: 61 ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120
ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC
Sbjct: 61 ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120
Query: 121 SEYDEDAPPCRR 132
SEYDEDAPPCR+
Sbjct: 121 SEYDEDAPPCRK 132
BLAST of Csor.00g004830 vs. NCBI nr
Match:
XP_008461278.1 (PREDICTED: uncharacterized protein LOC103499914 [Cucumis melo] >KAA0058637.1 uncharacterized protein E6C27_scaffold339G001060 [Cucumis melo var. makuwa] >TYK10444.1 uncharacterized protein E5676_scaffold459G00920 [Cucumis melo var. makuwa])
HSP 1 Score: 258 bits (660), Expect = 3.10e-86
Identity = 117/146 (80.14%), Postives = 130/146 (89.04%), Query Frame = 0
Query: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAA-AKRCLRCRTVYSDLDNSP 60
MAL+ L+HSL FP NGSKI AC++S PPI + SF+S+A AKRCLRC TVYSD+DNSP
Sbjct: 5 MALAPSLSHSLTFPPWNGSKIVACSNSINPPINSTSFQSSAVAKRCLRCHTVYSDVDNSP 64
Query: 61 SACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSC 120
SACAFHGH+TGE GLF+LSPPHQGIDGEWSDGSGVIVYKWN+K NRPN+G GNWKRRWSC
Sbjct: 65 SACAFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNDKSNRPNSGTGNWKRRWSC 124
Query: 121 CSEYDEDAPPCRRGWHVSYDDGFTLF 145
CSEYDE APPCRRGWHVSYDDGFTL+
Sbjct: 125 CSEYDERAPPCRRGWHVSYDDGFTLY 150
BLAST of Csor.00g004830 vs. NCBI nr
Match:
XP_004135925.1 (uncharacterized protein LOC101205320 [Cucumis sativus] >KGN45139.1 hypothetical protein Csa_016073 [Cucumis sativus])
HSP 1 Score: 255 bits (651), Expect = 7.31e-85
Identity = 115/146 (78.77%), Postives = 128/146 (87.67%), Query Frame = 0
Query: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAA-AKRCLRCRTVYSDLDNSP 60
MAL+ LNHS FP NGSKI AC++S PPI + SF+S++ AKRCLRC TVYSD+DNSP
Sbjct: 5 MALAPSLNHSPRFPPWNGSKIVACSNSINPPINSTSFQSSSVAKRCLRCHTVYSDVDNSP 64
Query: 61 SACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSC 120
SAC FHGH+TGE GLF+LSPPHQGIDGEWSDGSGVIVYKWN+K NRPN+G GNWKRRWSC
Sbjct: 65 SACVFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNDKSNRPNSGTGNWKRRWSC 124
Query: 121 CSEYDEDAPPCRRGWHVSYDDGFTLF 145
CSEYDE APPCRRGWHVSYDDGFTL+
Sbjct: 125 CSEYDERAPPCRRGWHVSYDDGFTLY 150
BLAST of Csor.00g004830 vs. ExPASy TrEMBL
Match:
A0A6J1H664 (uncharacterized protein LOC111460822 OS=Cucurbita moschata OX=3662 GN=LOC111460822 PE=4 SV=1)
HSP 1 Score: 316 bits (809), Expect = 2.38e-109
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60
MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS
Sbjct: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60
Query: 61 ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120
ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC
Sbjct: 61 ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120
Query: 121 SEYDEDAPPCRRGWHVSYDDGFTLF 145
SEYDEDAPPCRRGWHVSYDDGFTLF
Sbjct: 121 SEYDEDAPPCRRGWHVSYDDGFTLF 145
BLAST of Csor.00g004830 vs. ExPASy TrEMBL
Match:
A0A6J1KV96 (uncharacterized protein LOC111497902 OS=Cucurbita maxima OX=3661 GN=LOC111497902 PE=4 SV=1)
HSP 1 Score: 305 bits (782), Expect = 3.13e-105
Identity = 140/145 (96.55%), Postives = 141/145 (97.24%), Query Frame = 0
Query: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60
M LSTCLN L FPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS
Sbjct: 1 MELSTCLNRRLRFPSSNGSKITACTSSNTPPIGNVSFRSAAAKRCLRCRTVYSDLDNSPS 60
Query: 61 ACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120
ACAFHGH+TGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC
Sbjct: 61 ACAFHGHITGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSCC 120
Query: 121 SEYDEDAPPCRRGWHVSYDDGFTLF 145
SEYDEDAPPCRRGWHVSYDDGFTLF
Sbjct: 121 SEYDEDAPPCRRGWHVSYDDGFTLF 145
BLAST of Csor.00g004830 vs. ExPASy TrEMBL
Match:
A0A5A7UVD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00920 PE=4 SV=1)
HSP 1 Score: 258 bits (660), Expect = 1.50e-86
Identity = 117/146 (80.14%), Postives = 130/146 (89.04%), Query Frame = 0
Query: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAA-AKRCLRCRTVYSDLDNSP 60
MAL+ L+HSL FP NGSKI AC++S PPI + SF+S+A AKRCLRC TVYSD+DNSP
Sbjct: 5 MALAPSLSHSLTFPPWNGSKIVACSNSINPPINSTSFQSSAVAKRCLRCHTVYSDVDNSP 64
Query: 61 SACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSC 120
SACAFHGH+TGE GLF+LSPPHQGIDGEWSDGSGVIVYKWN+K NRPN+G GNWKRRWSC
Sbjct: 65 SACAFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNDKSNRPNSGTGNWKRRWSC 124
Query: 121 CSEYDEDAPPCRRGWHVSYDDGFTLF 145
CSEYDE APPCRRGWHVSYDDGFTL+
Sbjct: 125 CSEYDERAPPCRRGWHVSYDDGFTLY 150
BLAST of Csor.00g004830 vs. ExPASy TrEMBL
Match:
A0A1S3CEC7 (uncharacterized protein LOC103499914 OS=Cucumis melo OX=3656 GN=LOC103499914 PE=4 SV=1)
HSP 1 Score: 258 bits (660), Expect = 1.50e-86
Identity = 117/146 (80.14%), Postives = 130/146 (89.04%), Query Frame = 0
Query: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAA-AKRCLRCRTVYSDLDNSP 60
MAL+ L+HSL FP NGSKI AC++S PPI + SF+S+A AKRCLRC TVYSD+DNSP
Sbjct: 5 MALAPSLSHSLTFPPWNGSKIVACSNSINPPINSTSFQSSAVAKRCLRCHTVYSDVDNSP 64
Query: 61 SACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSC 120
SACAFHGH+TGE GLF+LSPPHQGIDGEWSDGSGVIVYKWN+K NRPN+G GNWKRRWSC
Sbjct: 65 SACAFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNDKSNRPNSGTGNWKRRWSC 124
Query: 121 CSEYDEDAPPCRRGWHVSYDDGFTLF 145
CSEYDE APPCRRGWHVSYDDGFTL+
Sbjct: 125 CSEYDERAPPCRRGWHVSYDDGFTLY 150
BLAST of Csor.00g004830 vs. ExPASy TrEMBL
Match:
A0A0A0K8C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428270 PE=4 SV=1)
HSP 1 Score: 255 bits (651), Expect = 3.54e-85
Identity = 115/146 (78.77%), Postives = 128/146 (87.67%), Query Frame = 0
Query: 1 MALSTCLNHSLGFPSSNGSKITACTSSNTPPIGNVSFRSAA-AKRCLRCRTVYSDLDNSP 60
MAL+ LNHS FP NGSKI AC++S PPI + SF+S++ AKRCLRC TVYSD+DNSP
Sbjct: 5 MALAPSLNHSPRFPPWNGSKIVACSNSINPPINSTSFQSSSVAKRCLRCHTVYSDVDNSP 64
Query: 61 SACAFHGHVTGESGLFSLSPPHQGIDGEWSDGSGVIVYKWNEKGNRPNTGAGNWKRRWSC 120
SAC FHGH+TGE GLF+LSPPHQGIDGEWSDGSGVIVYKWN+K NRPN+G GNWKRRWSC
Sbjct: 65 SACVFHGHITGERGLFALSPPHQGIDGEWSDGSGVIVYKWNDKSNRPNSGTGNWKRRWSC 124
Query: 121 CSEYDEDAPPCRRGWHVSYDDGFTLF 145
CSEYDE APPCRRGWHVSYDDGFTL+
Sbjct: 125 CSEYDERAPPCRRGWHVSYDDGFTLY 150
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| XP_022959906.1 | 4.92e-109 | 100.00 | uncharacterized protein LOC111460822 [Cucurbita moschata] >KAG6593308.1 hypothet... | [more] |
| XP_023004680.1 | 6.47e-105 | 96.55 | uncharacterized protein LOC111497902 [Cucurbita maxima] | [more] |
| KAG7025658.1 | 4.87e-96 | 99.24 | hypothetical protein SDJN02_12155, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| XP_008461278.1 | 3.10e-86 | 80.14 | PREDICTED: uncharacterized protein LOC103499914 [Cucumis melo] >KAA0058637.1 unc... | [more] |
| XP_004135925.1 | 7.31e-85 | 78.77 | uncharacterized protein LOC101205320 [Cucumis sativus] >KGN45139.1 hypothetical ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1H664 | 2.38e-109 | 100.00 | uncharacterized protein LOC111460822 OS=Cucurbita moschata OX=3662 GN=LOC1114608... | [more] |
| A0A6J1KV96 | 3.13e-105 | 96.55 | uncharacterized protein LOC111497902 OS=Cucurbita maxima OX=3661 GN=LOC111497902... | [more] |
| A0A5A7UVD3 | 1.50e-86 | 80.14 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S3CEC7 | 1.50e-86 | 80.14 | uncharacterized protein LOC103499914 OS=Cucumis melo OX=3656 GN=LOC103499914 PE=... | [more] |
| A0A0A0K8C8 | 3.54e-85 | 78.77 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428270 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
