Csor.00g004750 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g004750
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr08: 3211303 .. 3213034 (+)
RNA-Seq Expression	Csor.00g004750
Synteny	Csor.00g004750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCTGCTCTTCCATTCGACTTATCTTGTGCCTAAAACATCCGAAATAATAATAATAATAATTAAAAATAAAAATTTTAGGGTTTATAATTCCATTTAACCTTTGAGTTATTTATTTAATTATTTTAAAAAAATAAAACATCGGAAATAATAATAATAATAATAATACTTAAAAATAAAATATTTAGGGTTTATAAATCAATTTAACCTTCGAGTTATTTATTTAATTATTTTAAAAAAATTATGTTCATTAATAATTACGGCTGGATTTTAAATTACTCTATTTTTGGTTGGTCCACTTGACCGGACAAGAAAGTTAGTTTTTCAAAAATTCAACCAAAAAATCAACTTTATATTTTTTTTAATTTTTTAAATTTTAATTTAATAAGCGGAAACAAATTCAAAATTTATGAGTTGATTTTTCTACATTTTAAATTAAAAATTAAGAAACACCCTTTTGTTTATATAATTTTTATAATTACTAAAATACCAAAAAATTATATAAAAAAATAAAGAAAAAATAAAAAAGTTATCCTCTCCTTAATTAAAAAGGCAAAGGTAGAAATAACCTAAAATTTAGGATTAATTTTTAAGTTTTTATTTTTTCTGTTATTTAATCGAATTTCGGACTGAAAATTTTCCTTCTATATTCACGTGAACAGGGAAGGAGGCCCTCTCTTCGTCTACTTCACTTTTCTGCCTAAACACAAATTTCCCAGCCTTCGGGTCAGTTAATGATCAATTTCAATCCAATCGTTCCTCAAATTCATCAACAGATCTTCAATCTGGTCTTGCGGAATCCGATCGTCGTCGAGTTTCGCAGTCGAAGCGGAAGATTTCGATTCTGAGATTCAAAGTTGTTCTAAGAGCGTTCGGGTAAGTTAATGATTCGTTTTGATCGGTTAAAGAATATTAGTTACTTGCTGTTTGTTGTTTTGGATACTGTATTTGCTTGTGTTTTCACTTTTGATTGGGATTGTTCTTCGCGGGCTATGAGGATCAGGAGCTAGGGTTTTGTTTCTCCTTCGATATGGTTTCGCTTTTATTACGCGGATGTTTATGTGCTCGTTTTTCCTTGTTGCTCAACGTTTTGATATGCGGTCTAGTGATTTTTACCTGCGTCATCAAAATTACGGAAATATTGGAGTGTGGTGTTTGTTAATCGTCGTCTGGAGCCTGGTCGTTGTAGTTGTTATTTTTATTTAATATTGGCCGTTTTGATTTGGTCGGTTAACTGTTTTGAGGGTTTGATCGATATTTTATTGTGACAAAGACACTTGCACTAGCAGCTCGGTGTAAGAGATTTTTGTGGACTATTGGTTAAATTAGTTCGTCCATGTGAGCTTTTTGTTATTGTCTTTGCTACAAGTTGGCACTGTTTTTGTGTCTTCATGGTCTATCAATGGAAGGTACCCGAAAAATTTAGGGTCTGCTGAACTGTGCTTATATATATATATATATATATATATCTTCTTTTTTATCTTTATAAATGTGGGATTAACGATGTTATGTTTAACTAGTGCAAAAGTTGGTGGGTGTTTGAATGGAGAAGATTTCCATTTATCCTTTGGGATATCCCACTTTTTTCTGGATTATTTGAACGTTAATTTTTTTTCTTTCAGGGTTTATCTGCTAAATTCAGTTTTCTACTTTTACCTCCTTGTTTAAAATGCTTGGATCCTTGTTTTTCTAACGATGATTCATTCTACGCAGCCTGAGTACTCTGTGA

mRNA sequence

ATGGTTGCTGCTCTTCCATTCGACTTATCTTGGAAGGAGGCCCTCTCTTCGTCTACTTCACTTTTCTGCCTAAACACAAATTTCCCAGCCTTCGGGTCAGTTAATGATCAATTTCAATCCAATCGTTCCTCAAATTCATCAACAGATCTTCAATCTGGTCTTGCGGAATCCGATCGTCGTCGAGTTTCGCAGTCGAAGCGGAAGATTTCGATTCTGAGATTCAAAGTTGTTCTAAGAGCGTTCGGCCTGAGTACTCTGTGA

Coding sequence (CDS)

ATGGTTGCTGCTCTTCCATTCGACTTATCTTGGAAGGAGGCCCTCTCTTCGTCTACTTCACTTTTCTGCCTAAACACAAATTTCCCAGCCTTCGGGTCAGTTAATGATCAATTTCAATCCAATCGTTCCTCAAATTCATCAACAGATCTTCAATCTGGTCTTGCGGAATCCGATCGTCGTCGAGTTTCGCAGTCGAAGCGGAAGATTTCGATTCTGAGATTCAAAGTTGTTCTAAGAGCGTTCGGCCTGAGTACTCTGTGA

Protein sequence

MVAALPFDLSWKEALSSSTSLFCLNTNFPAFGSVNDQFQSNRSSNSSTDLQSGLAESDRRRVSQSKRKISILRFKVVLRAFGLSTL

Homology

[Close]

BLAST of Csor.00g004750 vs. NCBI nr
Match: KAG6593316.1 (hypothetical protein SDJN03_12792, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161 bits (408), Expect = 9.46e-50
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVAALPFDLSWKEALSSSTSLFCLNTNFPAFGSVNDQFQSNRSSNSSTDLQSGLAESDRR 60
          MVAALPFDLSWKEALSSSTSLFCLNTNFPAFGSVNDQFQSNRSSNSSTDLQSGLAESDRR
Sbjct: 1  MVAALPFDLSWKEALSSSTSLFCLNTNFPAFGSVNDQFQSNRSSNSSTDLQSGLAESDRR 60

Query: 61 RVSQSKRKISILRFKVVLRAFGLSTL 86
          RVSQSKRKISILRFKVVLRAFGLSTL
Sbjct: 61 RVSQSKRKISILRFKVVLRAFGLSTL 86

The following BLAST results are available for this feature:

BLAST of Csor.00g004750 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g004750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593316.1	9.46e-50	100.00	hypothetical protein SDJN03_12792, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g004750 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g004750 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g004750.m01	Csor.00g004750.m01	mRNA