Csor.00g004580 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g004580
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr08: 3289315 .. 3289602 (+)
RNA-Seq Expression	Csor.00g004580
Synteny	Csor.00g004580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTACGGTCGATACGCCTTTTATTCATTGCACGTGCCAGCCAACGCTCATGGGCGTCCAGTTTTCCGGTAATTTGGGCTGGGCCTTTTGCATCCACCGAAGGACTTATTGGGCCGAGCCCAGTCAACTGTGCACGTTGACCTTCAGCTTCAATTCCCCCATGGCTTCAGTAAAAAGAGGTGATACAGTGCCTGAAACTGTAAACAAGGAACAAAAATGGCATGTTGCTGCTGCTGTGGTCAATGCTCTGAAAACAATGGGCCCTGCAACCACCAACACTTTGTGA

mRNA sequence

ATGTGTACGGTCGATACGCCTTTTATTCATTGCACGTGCCAGCCAACGCTCATGGGCGTCCAGTTTTCCGGTAATTTGGGCTGGGCCTTTTGCATCCACCGAAGGACTTATTGGGCCGAGCCCAGTCAACTGTGCACGTTGACCTTCAGCTTCAATTCCCCCATGGCTTCAGTAAAAAGAGGTGATACAGTGCCTGAAACTGTAAACAAGGAACAAAAATGGCATGTTGCTGCTGCTGTGGTCAATGCTCTGAAAACAATGGGCCCTGCAACCACCAACACTTTGTGA

Coding sequence (CDS)

ATGTGTACGGTCGATACGCCTTTTATTCATTGCACGTGCCAGCCAACGCTCATGGGCGTCCAGTTTTCCGGTAATTTGGGCTGGGCCTTTTGCATCCACCGAAGGACTTATTGGGCCGAGCCCAGTCAACTGTGCACGTTGACCTTCAGCTTCAATTCCCCCATGGCTTCAGTAAAAAGAGGTGATACAGTGCCTGAAACTGTAAACAAGGAACAAAAATGGCATGTTGCTGCTGCTGTGGTCAATGCTCTGAAAACAATGGGCCCTGCAACCACCAACACTTTGTGA

Protein sequence

MCTVDTPFIHCTCQPTLMGVQFSGNLGWAFCIHRRTYWAEPSQLCTLTFSFNSPMASVKRGDTVPETVNKEQKWHVAAAVVNALKTMGPATTNTL

Homology

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BLAST of Csor.00g004580 vs. NCBI nr
Match: KAG6593333.1 (hypothetical protein SDJN03_12809, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205 bits (521), Expect = 1.03e-66
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MCTVDTPFIHCTCQPTLMGVQFSGNLGWAFCIHRRTYWAEPSQLCTLTFSFNSPMASVKR 60
          MCTVDTPFIHCTCQPTLMGVQFSGNLGWAFCIHRRTYWAEPSQLCTLTFSFNSPMASVKR
Sbjct: 1  MCTVDTPFIHCTCQPTLMGVQFSGNLGWAFCIHRRTYWAEPSQLCTLTFSFNSPMASVKR 60

Query: 61 GDTVPETVNKEQKWHVAAAVVNALKTMGPATTNTL 95
          GDTVPETVNKEQKWHVAAAVVNALKTMGPATTNTL
Sbjct: 61 GDTVPETVNKEQKWHVAAAVVNALKTMGPATTNTL 95

The following BLAST results are available for this feature:

BLAST of Csor.00g004580 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g004580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593333.1	1.03e-66	100.00	hypothetical protein SDJN03_12809, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g004580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g004580 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g004580.m01	Csor.00g004580.m01	mRNA